Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:11:40 (2479855): wrapper (7.7.26015): starting
14:11:40 (2479855): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 14:11:40] Arguments: --nthreads 12
[2025-10-11 14:11:40] Threads: 12
[2025-10-11 14:11:40] Checking for CVMFS
[2025-10-11 14:11:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 14:11:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 14:11:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 14:11:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 14:11:40] 2.13.2.0 135553 3097 113596 151592 1 196 31717753 32503809 7926 16776704 0 51003622 99.972 3199148 51562 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 14:11:40] CVMFS is ok
[2025-10-11 14:11:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 14:11:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 14:11:40] Further information can be found at the LHC@home message board.
[2025-10-11 14:11:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 14:11:40] Checking for apptainer binary...
[2025-10-11 14:11:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 14:11:40] Running /usr/bin/apptainer --version
[2025-10-11 14:11:40] apptainer version 1.4.3-1.el9
[2025-10-11 14:11:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 14:11:40] c8-7-2.aglt2.org
[2025-10-11 14:11:40] apptainer works
[2025-10-11 14:11:40] Set ATHENA_PROC_NUMBER=12
[2025-10-11 14:11:40] Set ATHENA_CORE_NUMBER=12
[2025-10-11 14:11:40] Starting ATLAS job with PandaID=6838292460
[2025-10-11 14:11:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 14:40:57]  *** The last 200 lines of the pilot log: ***
[2025-10-11 14:40:57]  mtime=0
[2025-10-11 14:40:57]  protocol_id=None
[2025-10-11 14:40:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 14:40:57]  replicas=None
[2025-10-11 14:40:57]  scope=mc23_13p6TeV
[2025-10-11 14:40:57]  status=None
[2025-10-11 14:40:57]  status_code=0
[2025-10-11 14:40:57]  storage_token=
[2025-10-11 14:40:57]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6838292460/log.46676269._054899.job.log.tgz.1
[2025-10-11 14:40:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/95/log.46676269._054899.job.log.tgz.1
[2025-10-11 14:40:57]  workdir=None
[2025-10-11 14:40:57] ]
[2025-10-11 14:40:57] 2025-10-11 18:39:46,274 | INFO     | transferring file log.46676269._054899.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6838292460/log.46676269._054899.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 14:40:57] 2025-10-11 18:39:46,274 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6838292460/log.46676269._054899.job.log.tgz.1 /tmp/boinchome/slots/8/log.46676269._054899.job
[2025-10-11 14:40:57] 2025-10-11 18:39:46,289 | INFO     | adding to output.list: log.46676269._054899.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/95/log.46676269._054899.job.log.tg
[2025-10-11 14:40:57] 2025-10-11 18:39:46,289 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 14:40:57] 2025-10-11 18:39:46,289 | INFO     | summary of transferred files:
[2025-10-11 14:40:57] 2025-10-11 18:39:46,289 | INFO     |  -- lfn=log.46676269._054899.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 14:40:57] 2025-10-11 18:39:46,290 | INFO     | stage-out finished correctly
[2025-10-11 14:40:57] 2025-10-11 18:39:47,105 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 14:40:57] 2025-10-11 18:39:47,156 | INFO     | job 6838292460 has state=finished
[2025-10-11 14:40:57] 2025-10-11 18:39:47,156 | INFO     | preparing for final server update for job 6838292460 in state='finished'
[2025-10-11 14:40:57] 2025-10-11 18:39:47,157 | INFO     | this job has now completed (state=finished)
[2025-10-11 14:40:57] 2025-10-11 18:39:47,157 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 14:40:57] 2025-10-11 18:39:47,157 | INFO     | log transfer has been attempted: DONE
[2025-10-11 14:40:57] 2025-10-11 18:39:47,157 | INFO     | job 6838292460 has finished - writing final server update
[2025-10-11 14:40:57] 2025-10-11 18:39:47,158 | INFO     | total number of processed events: 400 (read)
[2025-10-11 14:40:57] 2025-10-11 18:39:47,158 | INFO     | executing command: lscpu
[2025-10-11 14:40:57] 2025-10-11 18:39:47,224 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 14:40:57] 2025-10-11 18:39:48,047 | INFO     | time since job start (1678s) is within the limit (172800.0s)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,052 | INFO     | time since job start (1680s) is within the limit (172800.0s)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,789 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 14:40:57] 2025-10-11 18:39:50,806 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3593.888945312498
[2025-10-11 14:40:57] 2025-10-11 18:39:50,833 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6838292460/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,834 | INFO     | extracted standard info from prmon json
[2025-10-11 14:40:57] 2025-10-11 18:39:50,834 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 14:40:57] 2025-10-11 18:39:50,834 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 14:40:57] 2025-10-11 18:39:50,834 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 14:40:57] 2025-10-11 18:39:50,834 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 14:40:57] 2025-10-11 18:39:50,835 | INFO     | fitting pss+swap vs Time
[2025-10-11 14:40:57] 2025-10-11 18:39:50,835 | INFO     | sum of square deviations: 2865170.0
[2025-10-11 14:40:57] 2025-10-11 18:39:50,835 | INFO     | sum of deviations: -143749550.0
[2025-10-11 14:40:57] 2025-10-11 18:39:50,835 | INFO     | mean x: 1760207248.0
[2025-10-11 14:40:57] 2025-10-11 18:39:50,835 | INFO     | mean y: 2403331.238095238
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | -- intersect: 88314440594.90427
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | intersect: 88314440594.90427
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | chi2: 0.003354376145576945
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | -- intersect: 88314440594.90427
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | current memory leak: -50.17 B/s (using 21 data points, chi2=0.00)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | could have reported an average CPU frequency of 3626 MHz (4 samples)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | ..............................
[2025-10-11 14:40:57] 2025-10-11 18:39:50,836 | INFO     | . Timing measurements:
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | . get job = 0 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | . initial setup = 2 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | . payload setup = 4 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | . stage-in = 0 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | . payload execution = 1653 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | . stage-out = 0 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | . log creation = 0 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,837 | INFO     | ..............................
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | 
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | job summary report
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | --------------------------------------------------
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | PanDA job id: 6838292460
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | task id: 46676269
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | errors: (none)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | pilot state: finished 
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | transexitcode: 0
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | exeerrorcode: 0
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | exeerrordiag: 
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | exitcode: 0
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | exitmsg: OK
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | cpuconsumptiontime: 17718 s
[2025-10-11 14:40:57] 2025-10-11 18:39:50,893 | INFO     | nevents: 400
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | neventsw: 0
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | pid: 2490675
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | pgrp: 2490675
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | corecount: 12
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | event service: False
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | sizes: {0: 2348857, 1: 2348857, 4: 2349147, 11: 2349175, 1661: 2383069, 1662: 2383069, 1666: 2383391}
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | --------------------------------------------------
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | 
[2025-10-11 14:40:57] 2025-10-11 18:39:50,894 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-10-11 14:40:57] 2025-10-11 18:39:50,910 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,910 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,910 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,910 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,910 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,910 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,910 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | job 6838292460 has completed (purged errors)
[2025-10-11 14:40:57] 2025-10-11 18:39:50,911 | INFO     | overall cleanup function is called
[2025-10-11 14:40:57] 2025-10-11 18:39:51,918 | INFO     | --- collectZombieJob: --- 10, [2490675]
[2025-10-11 14:40:57] 2025-10-11 18:39:51,919 | INFO     | zombie collector waiting for pid 2490675
[2025-10-11 14:40:57] 2025-10-11 18:39:51,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 14:40:57] 2025-10-11 18:39:51,919 | INFO     | collected zombie processes
[2025-10-11 14:40:57] 2025-10-11 18:39:51,919 | INFO     | will attempt to kill all subprocesses of pid=2490675
[2025-10-11 14:40:57] 2025-10-11 18:39:53,077 | INFO     | process IDs to be killed: [2490675] (in reverse order)
[2025-10-11 14:40:57] 2025-10-11 18:39:53,139 | WARNING  | process 2490675 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 14:40:57] 2025-10-11 18:39:53,210 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 14:40:57] 2025-10-11 18:39:53,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 14:40:57] 2025-10-11 18:39:53,270 | INFO     | did not find any defunct processes belonging to 2490675
[2025-10-11 14:40:57] 2025-10-11 18:39:53,333 | INFO     | did not find any defunct processes belonging to 2490675
[2025-10-11 14:40:57] 2025-10-11 18:39:53,333 | INFO     | ready for new job
[2025-10-11 14:40:57] 2025-10-11 18:39:53,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 14:40:57] 2025-10-11 18:39:53,335 | INFO     | ***************************************
[2025-10-11 14:40:57] 2025-10-11 18:39:53,335 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 14:40:57] 2025-10-11 18:39:53,335 | INFO     | ***************************************
[2025-10-11 14:40:57] 2025-10-11 18:39:53,335 | INFO     | 
[2025-10-11 14:40:57] 2025-10-11 18:39:53,354 | INFO     | architecture information:
[2025-10-11 14:40:57] 2025-10-11 18:39:53,354 | INFO     | executing command: cat /etc/os-release
[2025-10-11 14:40:57] 2025-10-11 18:39:53,368 | INFO     | cat /etc/os-release:
[2025-10-11 14:40:57] NAME="CentOS Linux"
[2025-10-11 14:40:57] VERSION="7 (Core)"
[2025-10-11 14:40:57] ID="centos"
[2025-10-11 14:40:57] ID_LIKE="rhel fedora"
[2025-10-11 14:40:57] VERSION_ID="7"
[2025-10-11 14:40:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 14:40:57] ANSI_COLOR="0;31"
[2025-10-11 14:40:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 14:40:57] HOME_URL="https://www.centos.org/"
[2025-10-11 14:40:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 14:40:57] 
[2025-10-11 14:40:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 14:40:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 14:40:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 14:40:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 14:40:57] 
[2025-10-11 14:40:57] 2025-10-11 18:39:53,368 | INFO     | ***************************************
[2025-10-11 14:40:57] 2025-10-11 18:39:53,523 | INFO     | using path: /tmp/boinchome/slots/8/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:40:57] 2025-10-11 18:39:53,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-10-11 14:40:57] 2025-10-11 18:39:53,886 | INFO     | sufficient remaining disk space (90976550912 B)
[2025-10-11 14:40:57] 2025-10-11 18:39:53,886 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 14:40:57] 2025-10-11 18:39:53,887 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 14:40:57] 2025-10-11 18:39:53,887 | INFO     | update_server=False
[2025-10-11 14:40:57] 2025-10-11 18:39:53,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 14:40:57] 2025-10-11 18:39:53,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 14:40:57] 2025-10-11 18:39:53,893 | INFO     | number of running child processes to parent process 2490675: 1
[2025-10-11 14:40:57] 2025-10-11 18:39:53,893 | INFO     | maximum number of monitored processes: 6
[2025-10-11 14:40:57] 2025-10-11 18:39:53,893 | INFO     | aborting job monitoring since job object (job id=6838292460) has expired
[2025-10-11 14:40:57] 2025-10-11 18:39:53,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:40:57] 2025-10-11 18:39:53,893 | INFO     | will abort loop
[2025-10-11 14:40:57] 2025-10-11 18:39:54,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 14:40:57] 2025-10-11 18:39:54,403 | INFO     | all job control threads have been joined
[2025-10-11 14:40:57] 2025-10-11 18:39:54,573 | INFO     | all payload control threads have been joined
[2025-10-11 14:40:57] 2025-10-11 18:39:54,892 | INFO     | [job] retrieve thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:54,898 | INFO     | [job] job monitor thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:54,934 | INFO     | all data control threads have been joined
[2025-10-11 14:40:57] 2025-10-11 18:39:54,965 | INFO     | [data] copytool_in thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,317 | INFO     | [payload] failed_post thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,408 | INFO     | [job] control thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,539 | INFO     | [job] validate thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,578 | INFO     | [payload] control thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,655 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,725 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,776 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:55,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:40:57] 2025-10-11 18:39:55,940 | INFO     | [data] control thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:56,363 | INFO     | [data] copytool_out thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:56,382 | INFO     | [payload] validate_post thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:56,908 | INFO     | [job] queue monitor thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:39:57,893 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 14:40:57] 2025-10-11 18:40:23,541 | INFO     | PID=2483565 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 14:40:57] 2025-10-11 18:40:23,542 | INFO     | .. there are 11 such processes running
[2025-10-11 14:40:57] 2025-10-11 18:40:23,542 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 14:40:57] 2025-10-11 18:40:23,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 14:40:57] 2025-10-11 18:40:23,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 14:40:57] 2025-10-11 18:40:52,214 | INFO     | [monitor] cgroup control has ended
[2025-10-11 14:40:57] 2025-10-11 18:40:52,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245291525952)>', '<ExcThread(monitor, started 140244347242240)>']
[2025-10-11 14:40:57] 2025-10-11 18:40:53,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 14:40:57] 2025-10-11 18:40:53,686 | INFO     | [monitor] control thread has ended
[2025-10-11 14:40:57] 2025-10-11 18:40:57,708 | INFO     | all workflow threads have been joined
[2025-10-11 14:40:57] 2025-10-11 18:40:57,708 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 14:40:57] 2025-10-11 18:40:57,708 | INFO     | traces error code: 0
[2025-10-11 14:40:57] 2025-10-11 18:40:57,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 14:40:57] 2025-10-11 18:40:57,810 [wrapper] ==== pilot stdout END ====
[2025-10-11 14:40:57] 2025-10-11 18:40:57,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 14:40:57] 2025-10-11 18:40:57,814 [wrapper] pilotpid: 2483565
[2025-10-11 14:40:57] 2025-10-11 18:40:57,816 [wrapper] Pilot exit status: 0
[2025-10-11 14:40:57] 2025-10-11 18:40:57,824 [wrapper] pandaids: 6838292460
[2025-10-11 14:40:57] 2025-10-11 18:40:57,922 [wrapper] cleanup supervisor_pilot 2576944 2483566
[2025-10-11 14:40:57] 2025-10-11 18:40:57,924 [wrapper] Test setup, not cleaning
[2025-10-11 14:40:57] 2025-10-11 18:40:57,926 [wrapper] apfmon messages muted
[2025-10-11 14:40:57] 2025-10-11 18:40:57,928 [wrapper] ==== wrapper stdout END ====
[2025-10-11 14:40:57] 2025-10-11 18:40:57,929 [wrapper] ==== wrapper stderr END ====
[2025-10-11 14:40:57]  *** Error codes and diagnostics ***
[2025-10-11 14:40:57]     "exeErrorCode": 0,
[2025-10-11 14:40:57]     "exeErrorDiag": "",
[2025-10-11 14:40:57]     "pilotErrorCode": 0,
[2025-10-11 14:40:57]     "pilotErrorDiag": "",
[2025-10-11 14:40:57]  *** Listing of results directory ***
[2025-10-11 14:40:57] total 417384
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 05:03 pilot3.tar.gz
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 05:08 queuedata.json
[2025-10-11 14:40:57] -rwx------. 1 boincer umatlas     36292 Oct 11 05:09 runpilot2-wrapper.sh
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas       100 Oct 11 14:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 14:40:57] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 14:11 run_atlas
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas       105 Oct 11 14:11 job.xml
[2025-10-11 14:40:57] -rw-r--r--. 2 boincer umatlas 222402437 Oct 11 14:11 EVNT.46676267._002201.pool.root.1
[2025-10-11 14:40:57] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 14:11 start_atlas.sh
[2025-10-11 14:40:57] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 14:11 shared
[2025-10-11 14:40:57] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 14:11 input.tar.gz
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas         0 Oct 11 14:11 boinc_lockfile
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 14:11 pandaJob.out
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas    975520 Oct 11 14:11 agis_schedconf.cvmfs.json
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas   1560580 Oct 11 14:11 agis_ddmendpoints.agis.ALL.json
[2025-10-11 14:40:57] drwx------. 5 boincer umatlas      4096 Oct 11 14:11 pilot3
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 14:37 init_data.xml
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas 199820708 Oct 11 14:39 HITS.46676269._054899.pool.root.1
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas        95 Oct 11 14:39 pilot_heartbeat.json
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas       529 Oct 11 14:39 boinc_task_state.xml
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas      1030 Oct 11 14:39 memory_monitor_summary.json
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas    352331 Oct 11 14:39 log.46676269._054899.job.log.tgz.1
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas      7777 Oct 11 14:39 heartbeat.json
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas        27 Oct 11 14:40 wrapper_checkpoint.txt
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 14:40 boinc_mmap_file
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas      5231 Oct 11 14:40 pilotlog.txt
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas    279009 Oct 11 14:40 log.46676269._054899.job.log.1
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas       357 Oct 11 14:40 output.list
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas       620 Oct 11 14:40 runtime_log
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas    655360 Oct 11 14:40 result.tar.gz
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas       649 Oct 11 14:40 xpxMDmBmkR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlyfNDmzhJ58m.diag
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 14:40 runtime_log.err
[2025-10-11 14:40:57] -rw-r--r--. 1 boincer umatlas     21686 Oct 11 14:40 stderr.txt
[2025-10-11 14:40:57] HITS file was successfully produced:
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas 199820708 Oct 11 14:39 shared/HITS.pool.root.1
[2025-10-11 14:40:57]  *** Contents of shared directory: ***
[2025-10-11 14:40:57] total 413556
[2025-10-11 14:40:57] -rw-r--r--. 2 boincer umatlas 222402437 Oct 11 14:11 ATLAS.root_0
[2025-10-11 14:40:57] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 14:11 start_atlas.sh
[2025-10-11 14:40:57] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 14:11 input.tar.gz
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas 199820708 Oct 11 14:39 HITS.pool.root.1
[2025-10-11 14:40:57] -rw-------. 1 boincer umatlas    655360 Oct 11 14:40 result.tar.gz
14:40:59 (2479855): run_atlas exited; CPU time 17755.726763
14:40:59 (2479855): called boinc_finish(0)

</stderr_txt>
]]>

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