Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:34:02 (1641367): wrapper (7.7.26015): starting
04:34:02 (1641367): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 04:34:02] Arguments: --nthreads 2
[2025-10-12 04:34:02] Threads: 2
[2025-10-12 04:34:02] Checking for CVMFS
[2025-10-12 04:34:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:34:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:34:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:34:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:34:03] 2.9.2.0 1641490 0 30004 151604 4 1 33849770 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 04:34:03] CVMFS is ok
[2025-10-12 04:34:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:34:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:34:03] Further information can be found at the LHC@home message board.
[2025-10-12 04:34:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:34:03] Checking for apptainer binary...
[2025-10-12 04:34:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:34:03] Running /usr/bin/apptainer --version
[2025-10-12 04:34:03] apptainer version 1.4.1-1.1
[2025-10-12 04:34:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:34:03] thA315
[2025-10-12 04:34:03] apptainer works
[2025-10-12 04:34:03] Set ATHENA_PROC_NUMBER=2
[2025-10-12 04:34:03] Set ATHENA_CORE_NUMBER=2
[2025-10-12 04:34:03] Starting ATLAS job with PandaID=6838451549
[2025-10-12 04:34:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:50:10]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:50:10] 2025-10-12 04:42:22,903 | INFO     | overall cleanup function is called
[2025-10-12 06:50:10] 2025-10-12 04:42:23,908 | INFO     | --- collectZombieJob: --- 10, [1651965]
[2025-10-12 06:50:10] 2025-10-12 04:42:23,909 | INFO     | zombie collector waiting for pid 1651965
[2025-10-12 06:50:10] 2025-10-12 04:42:23,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:50:10] 2025-10-12 04:42:23,909 | INFO     | collected zombie processes
[2025-10-12 06:50:10] 2025-10-12 04:42:23,909 | INFO     | will attempt to kill all subprocesses of pid=1651965
[2025-10-12 06:50:10] 2025-10-12 04:42:23,976 | INFO     | process IDs to be killed: [1651965] (in reverse order)
[2025-10-12 06:50:10] 2025-10-12 04:42:23,996 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:50:10] 2025-10-12 04:42:23,996 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:50:10] 2025-10-12 04:42:23,997 | INFO     | did not find any defunct processes belonging to 1651965
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | did not find any defunct processes belonging to 1651965
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | ready for new job
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | ***************************************
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | ***************************************
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | 
[2025-10-12 06:50:10] 2025-10-12 04:42:23,998 | INFO     | architecture information:
[2025-10-12 06:50:10] 2025-10-12 04:42:23,999 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:50:10] 2025-10-12 04:42:24,007 | INFO     | cat /etc/os-release:
[2025-10-12 06:50:10] NAME="CentOS Linux"
[2025-10-12 06:50:10] VERSION="7 (Core)"
[2025-10-12 06:50:10] ID="centos"
[2025-10-12 06:50:10] ID_LIKE="rhel fedora"
[2025-10-12 06:50:10] VERSION_ID="7"
[2025-10-12 06:50:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:50:10] ANSI_COLOR="0;31"
[2025-10-12 06:50:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:50:10] HOME_URL="https://www.centos.org/"
[2025-10-12 06:50:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:50:10] 
[2025-10-12 06:50:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:50:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:50:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:50:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:50:10] 
[2025-10-12 06:50:10] 2025-10-12 04:42:24,007 | INFO     | ***************************************
[2025-10-12 06:50:10] 2025-10-12 04:42:24,510 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 06:50:10] 2025-10-12 04:42:24,530 | INFO     | sufficient remaining disk space (490252271616 B)
[2025-10-12 06:50:10] 2025-10-12 04:42:24,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:50:10] 2025-10-12 04:42:24,530 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:50:10] 2025-10-12 04:42:24,531 | INFO     | update_server=False
[2025-10-12 06:50:10] 2025-10-12 04:42:24,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:50:10] 2025-10-12 04:42:24,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:50:10] 2025-10-12 04:42:24,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:50:10] 2025-10-12 04:42:24,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:50:10] 2025-10-12 04:42:24,532 | INFO     | aborting loop
[2025-10-12 06:50:10] 2025-10-12 04:42:24,698 | INFO     | all data control threads have been joined
[2025-10-12 06:50:10] 2025-10-12 04:42:25,131 | INFO     | all job control threads have been joined
[2025-10-12 06:50:10] 2025-10-12 04:42:25,162 | INFO     | all payload control threads have been joined
[2025-10-12 06:50:10] 2025-10-12 04:42:25,535 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:25,536 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:25,537 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:25,544 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:25,671 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:50:10] 2025-10-12 04:42:25,703 | INFO     | [data] control thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:25,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:50:10] 2025-10-12 04:42:26,078 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:26,136 | INFO     | [job] control thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:26,138 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:26,161 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:26,168 | INFO     | [payload] control thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:26,296 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:26,916 | INFO     | [job] validate thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:26,917 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:27,950 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:28,537 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:34,604 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:50:10] 2025-10-12 04:42:35,609 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:50:10] 2025-10-12 04:42:36,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961781532480)>', '<ExcThread(monitor, started 139961290446592)>']
[2025-10-12 06:50:10] 2025-10-12 04:42:41,576 | INFO     | all workflow threads have been joined
[2025-10-12 06:50:10] 2025-10-12 04:42:41,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:50:10] 2025-10-12 04:42:41,576 | INFO     | traces error code: 0
[2025-10-12 06:50:10] 2025-10-12 04:42:41,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:50:10] 2025-10-12 04:42:54,089 | INFO     | PID=1645553 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:50:10] 2025-10-12 04:42:54,089 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:50:10] 2025-10-12 04:42:54,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:50:10] 2025-10-12 04:42:54,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:50:10] 2025-10-12 04:42:54,089 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:50:10] 2025-10-12 04:42:54,089 | INFO     | [monitor] control thread has ended
[2025-10-12 06:50:10] 2025-10-12 04:42:54,133 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:50:10] 2025-10-12 04:42:54,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:50:10] 2025-10-12 04:42:54,137 [wrapper] pilotpid: 1645553
[2025-10-12 06:50:10] 2025-10-12 04:42:54,139 [wrapper] Pilot exit status: 0
[2025-10-12 06:50:10] 2025-10-12 04:42:54,144 [wrapper] pandaids: 6838451549
[2025-10-12 06:50:10] 2025-10-12 04:42:54,158 [wrapper] cleanup supervisor_pilot 1666722 1645554
[2025-10-12 06:50:10] 2025-10-12 04:42:54,160 [wrapper] Test setup, not cleaning
[2025-10-12 06:50:10] 2025-10-12 04:42:54,162 [wrapper] apfmon messages muted
[2025-10-12 06:50:10] 2025-10-12 04:42:54,164 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:50:10] 2025-10-12 04:42:54,166 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:50:10]  *** Error codes and diagnostics ***
[2025-10-12 06:50:10]     "exeErrorCode": 0,
[2025-10-12 06:50:10]     "exeErrorDiag": "",
[2025-10-12 06:50:10]     "pilotErrorCode": 0,
[2025-10-12 06:50:10]     "pilotErrorDiag": "",
[2025-10-12 06:50:10]  *** Listing of results directory ***
[2025-10-12 06:50:10] total 408212
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc    557409 Oct 11 14:51 pilot3.tar.gz
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc      5112 Oct 11 15:05 queuedata.json
[2025-10-12 06:50:10] -rwx------ 1 boinc boinc     36292 Oct 11 15:06 runpilot2-wrapper.sh
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc       100 Oct 12 04:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:50:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 04:34 run_atlas
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc       105 Oct 12 04:34 job.xml
[2025-10-12 06:50:10] -rw-r--r-- 2 boinc boinc 221216427 Oct 12 04:34 EVNT.46676267._002335.pool.root.1
[2025-10-12 06:50:10] -rw-r--r-- 2 boinc boinc    569679 Oct 12 04:34 input.tar.gz
[2025-10-12 06:50:10] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:34 start_atlas.sh
[2025-10-12 06:50:10] drwxrwx--x 2 boinc boinc      4096 Oct 12 04:34 shared
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:34 boinc_setup_complete
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc      6205 Oct 12 04:34 init_data.xml
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:34 boinc_lockfile
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc      2549 Oct 12 04:34 pandaJob.out
[2025-10-12 06:50:10] -rw------- 1 boinc boinc    975496 Oct 12 04:34 agis_schedconf.cvmfs.json
[2025-10-12 06:50:10] -rw------- 1 boinc boinc   1560580 Oct 12 04:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:50:10] drwx------ 5 boinc boinc      4096 Oct 12 04:34 pilot3
[2025-10-12 06:50:10] -rw------- 1 boinc boinc 190138756 Oct 12 06:41 HITS.46676269._058229.pool.root.1
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc       529 Oct 12 06:41 boinc_task_state.xml
[2025-10-12 06:50:10] -rw------- 1 boinc boinc      1017 Oct 12 06:41 memory_monitor_summary.json
[2025-10-12 06:50:10] -rw------- 1 boinc boinc    277674 Oct 12 06:42 log.46676269._058229.job.log.tgz.1
[2025-10-12 06:50:10] -rw------- 1 boinc boinc      7751 Oct 12 06:42 heartbeat.json
[2025-10-12 06:50:10] -rw------- 1 boinc boinc       747 Oct 12 06:42 pilotlog.txt
[2025-10-12 06:50:10] -rw------- 1 boinc boinc        95 Oct 12 06:42 pilot_heartbeat.json
[2025-10-12 06:50:10] -rw------- 1 boinc boinc   1105811 Oct 12 06:42 log.46676269._058229.job.log.1
[2025-10-12 06:50:10] -rw------- 1 boinc boinc       357 Oct 12 06:42 output.list
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc       620 Oct 12 06:42 runtime_log
[2025-10-12 06:50:10] -rw------- 1 boinc boinc   1402880 Oct 12 06:42 result.tar.gz
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc      8777 Oct 12 06:42 runtime_log.err
[2025-10-12 06:50:10] -rw------- 1 boinc boinc       660 Oct 12 06:42 B1ALDmyToR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlwRMDmPCVrmm.diag
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc        27 Oct 12 06:50 wrapper_checkpoint.txt
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc      8192 Oct 12 06:50 boinc_mmap_file
[2025-10-12 06:50:10] -rw-r--r-- 1 boinc boinc     10785 Oct 12 06:50 stderr.txt
[2025-10-12 06:50:10] HITS file was successfully produced:
[2025-10-12 06:50:10] -rw------- 1 boinc boinc 190138756 Oct 12 06:41 shared/HITS.pool.root.1
[2025-10-12 06:50:10]  *** Contents of shared directory: ***
[2025-10-12 06:50:10] total 403672
[2025-10-12 06:50:10] -rw-r--r-- 2 boinc boinc 221216427 Oct 12 04:34 ATLAS.root_0
[2025-10-12 06:50:10] -rw-r--r-- 2 boinc boinc    569679 Oct 12 04:34 input.tar.gz
[2025-10-12 06:50:10] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:34 start_atlas.sh
[2025-10-12 06:50:10] -rw------- 1 boinc boinc 190138756 Oct 12 06:41 HITS.pool.root.1
[2025-10-12 06:50:10] -rw------- 1 boinc boinc   1402880 Oct 12 06:42 result.tar.gz
06:50:12 (1641367): run_atlas exited; CPU time 14967.894527
06:50:12 (1641367): called boinc_finish(0)

</stderr_txt>
]]>

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