Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:05:15 (2459445): wrapper (7.7.26015): starting
10:05:15 (2459445): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 10:05:15] Arguments: --nthreads 3
[2025-10-12 10:05:15] Threads: 3
[2025-10-12 10:05:15] Checking for CVMFS
[2025-10-12 10:05:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:05:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:05:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:05:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:05:16] 2.9.2.0 1212649 4148 84016 151612 2 57 3696296 36864001 0 130560 0 3288090 99.991 137577 824 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 10:05:16] CVMFS is ok
[2025-10-12 10:05:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:05:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:05:16] Further information can be found at the LHC@home message board.
[2025-10-12 10:05:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:05:16] Checking for apptainer binary...
[2025-10-12 10:05:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:05:16] Running /usr/bin/apptainer --version
[2025-10-12 10:05:16] apptainer version 1.4.1-1.1
[2025-10-12 10:05:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:05:16] thA325a
[2025-10-12 10:05:16] apptainer works
[2025-10-12 10:05:16] Set ATHENA_PROC_NUMBER=3
[2025-10-12 10:05:16] Set ATHENA_CORE_NUMBER=3
[2025-10-12 10:05:16] Starting ATLAS job with PandaID=6838199338
[2025-10-12 10:05:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:27:33]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:27:33] 2025-10-12 09:26:54,657 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:27:33] 2025-10-12 09:26:54,657 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:27:33] 2025-10-12 09:26:54,657 | INFO     | job 6838199338 has completed (purged errors)
[2025-10-12 11:27:33] 2025-10-12 09:26:54,657 | INFO     | overall cleanup function is called
[2025-10-12 11:27:33] 2025-10-12 09:26:55,663 | INFO     | --- collectZombieJob: --- 10, [2469597]
[2025-10-12 11:27:33] 2025-10-12 09:26:55,663 | INFO     | zombie collector waiting for pid 2469597
[2025-10-12 11:27:33] 2025-10-12 09:26:55,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:27:33] 2025-10-12 09:26:55,663 | INFO     | collected zombie processes
[2025-10-12 11:27:33] 2025-10-12 09:26:55,663 | INFO     | will attempt to kill all subprocesses of pid=2469597
[2025-10-12 11:27:33] 2025-10-12 09:26:55,705 | INFO     | process IDs to be killed: [2469597] (in reverse order)
[2025-10-12 11:27:33] 2025-10-12 09:26:55,729 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:27:33] 2025-10-12 09:26:55,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:27:33] 2025-10-12 09:26:55,731 | INFO     | did not find any defunct processes belonging to 2469597
[2025-10-12 11:27:33] 2025-10-12 09:26:55,732 | INFO     | did not find any defunct processes belonging to 2469597
[2025-10-12 11:27:33] 2025-10-12 09:26:55,732 | INFO     | ready for new job
[2025-10-12 11:27:33] 2025-10-12 09:26:55,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:27:33] 2025-10-12 09:26:55,732 | INFO     | ***************************************
[2025-10-12 11:27:33] 2025-10-12 09:26:55,733 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:27:33] 2025-10-12 09:26:55,733 | INFO     | ***************************************
[2025-10-12 11:27:33] 2025-10-12 09:26:55,733 | INFO     | 
[2025-10-12 11:27:33] 2025-10-12 09:26:55,733 | INFO     | architecture information:
[2025-10-12 11:27:33] 2025-10-12 09:26:55,733 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:27:33] 2025-10-12 09:26:55,742 | INFO     | cat /etc/os-release:
[2025-10-12 11:27:33] NAME="CentOS Linux"
[2025-10-12 11:27:33] VERSION="7 (Core)"
[2025-10-12 11:27:33] ID="centos"
[2025-10-12 11:27:33] ID_LIKE="rhel fedora"
[2025-10-12 11:27:33] VERSION_ID="7"
[2025-10-12 11:27:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:27:33] ANSI_COLOR="0;31"
[2025-10-12 11:27:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:27:33] HOME_URL="https://www.centos.org/"
[2025-10-12 11:27:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:27:33] 
[2025-10-12 11:27:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:27:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:27:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:27:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:27:33] 
[2025-10-12 11:27:33] 2025-10-12 09:26:55,742 | INFO     | ***************************************
[2025-10-12 11:27:33] 2025-10-12 09:26:56,245 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 11:27:33] 2025-10-12 09:26:56,257 | INFO     | sufficient remaining disk space (255779143680 B)
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | INFO     | update_server=False
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:27:33] 2025-10-12 09:26:56,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:27:33] 2025-10-12 09:26:56,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:27:33] 2025-10-12 09:26:56,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:27:33] 2025-10-12 09:26:56,775 | INFO     | all data control threads have been joined
[2025-10-12 11:27:33] 2025-10-12 09:26:57,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:27:33] 2025-10-12 09:26:57,054 | INFO     | aborting loop
[2025-10-12 11:27:33] 2025-10-12 09:26:57,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:27:33] 2025-10-12 09:26:57,264 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:57,264 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:57,466 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:57,618 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:57,683 | INFO     | all payload control threads have been joined
[2025-10-12 11:27:33] 2025-10-12 09:26:57,781 | INFO     | [data] control thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:57,874 | INFO     | all job control threads have been joined
[2025-10-12 11:27:33] 2025-10-12 09:26:57,991 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:58,060 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:58,192 | INFO     | [job] validate thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:58,285 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:58,292 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:58,530 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:58,688 | INFO     | [payload] control thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:58,879 | INFO     | [job] control thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:26:59,113 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:27:00,265 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:27:06,344 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:27:33] 2025-10-12 09:27:07,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:27:33] 2025-10-12 09:27:27,560 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:27:33] 2025-10-12 09:27:28,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140479690581824)>', '<ExcThread(monitor, started 140479345698560)>']
[2025-10-12 11:27:33] 2025-10-12 09:27:29,429 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:27:33] 2025-10-12 09:27:29,429 | INFO     | [monitor] control thread has ended
[2025-10-12 11:27:33] 2025-10-12 09:27:33,648 | INFO     | all workflow threads have been joined
[2025-10-12 11:27:33] 2025-10-12 09:27:33,648 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:27:33] 2025-10-12 09:27:33,649 | INFO     | traces error code: 0
[2025-10-12 11:27:33] 2025-10-12 09:27:33,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:27:33] 2025-10-12 09:27:33,699 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:27:33] 2025-10-12 09:27:33,701 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:27:33] 2025-10-12 09:27:33,704 [wrapper] pilotpid: 2463165
[2025-10-12 11:27:33] 2025-10-12 09:27:33,706 [wrapper] Pilot exit status: 0
[2025-10-12 11:27:33] 2025-10-12 09:27:33,713 [wrapper] pandaids: 6838199338
[2025-10-12 11:27:33] 2025-10-12 09:27:33,729 [wrapper] cleanup supervisor_pilot 2481573 2463166
[2025-10-12 11:27:33] 2025-10-12 09:27:33,731 [wrapper] Test setup, not cleaning
[2025-10-12 11:27:33] 2025-10-12 09:27:33,734 [wrapper] apfmon messages muted
[2025-10-12 11:27:33] 2025-10-12 09:27:33,736 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:27:33] 2025-10-12 09:27:33,738 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:27:33]  *** Error codes and diagnostics ***
[2025-10-12 11:27:33]     "exeErrorCode": 0,
[2025-10-12 11:27:33]     "exeErrorDiag": "",
[2025-10-12 11:27:33]     "pilotErrorCode": 0,
[2025-10-12 11:27:33]     "pilotErrorDiag": "",
[2025-10-12 11:27:33]  *** Listing of results directory ***
[2025-10-12 11:27:33] total 415700
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc    557409 Oct 11 09:02 pilot3.tar.gz
[2025-10-12 11:27:33] -rwx------ 1 boinc boinc     36292 Oct 11 09:09 runpilot2-wrapper.sh
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc      5112 Oct 11 09:09 queuedata.json
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc       100 Oct 12 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:27:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 10:05 run_atlas
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc       105 Oct 12 10:05 job.xml
[2025-10-12 11:27:33] -rw-r--r-- 2 boinc boinc 225664141 Oct 12 10:05 EVNT.46676267._002144.pool.root.1
[2025-10-12 11:27:33] -rw-r--r-- 2 boinc boinc    569678 Oct 12 10:05 input.tar.gz
[2025-10-12 11:27:33] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:05 start_atlas.sh
[2025-10-12 11:27:33] drwxrwx--x 2 boinc boinc      4096 Oct 12 10:05 shared
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:05 boinc_setup_complete
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc      6439 Oct 12 10:05 init_data.xml
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:05 boinc_lockfile
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc      2549 Oct 12 10:05 pandaJob.out
[2025-10-12 11:27:33] -rw------- 1 boinc boinc    975520 Oct 12 10:05 agis_schedconf.cvmfs.json
[2025-10-12 11:27:33] -rw------- 1 boinc boinc   1560580 Oct 12 10:05 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:27:33] drwx------ 5 boinc boinc      4096 Oct 12 10:05 pilot3
[2025-10-12 11:27:33] -rw------- 1 boinc boinc 194196259 Oct 12 11:26 HITS.46676269._053418.pool.root.1
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc       529 Oct 12 11:26 boinc_task_state.xml
[2025-10-12 11:27:33] -rw------- 1 boinc boinc      1019 Oct 12 11:26 memory_monitor_summary.json
[2025-10-12 11:27:33] -rw------- 1 boinc boinc        95 Oct 12 11:26 pilot_heartbeat.json
[2025-10-12 11:27:33] -rw------- 1 boinc boinc    241892 Oct 12 11:26 log.46676269._053418.job.log.tgz.1
[2025-10-12 11:27:33] -rw------- 1 boinc boinc      7761 Oct 12 11:26 heartbeat.json
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc        27 Oct 12 11:27 wrapper_checkpoint.txt
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc      8192 Oct 12 11:27 boinc_mmap_file
[2025-10-12 11:27:33] -rw------- 1 boinc boinc      4628 Oct 12 11:27 pilotlog.txt
[2025-10-12 11:27:33] -rw------- 1 boinc boinc    720322 Oct 12 11:27 log.46676269._053418.job.log.1
[2025-10-12 11:27:33] -rw------- 1 boinc boinc       357 Oct 12 11:27 output.list
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc       620 Oct 12 11:27 runtime_log
[2025-10-12 11:27:33] -rw------- 1 boinc boinc    983040 Oct 12 11:27 result.tar.gz
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc      8782 Oct 12 11:27 runtime_log.err
[2025-10-12 11:27:33] -rw------- 1 boinc boinc       659 Oct 12 11:27 l8ILDmluiR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmfRRMDmGwVhRm.diag
[2025-10-12 11:27:33] -rw-r--r-- 1 boinc boinc     11031 Oct 12 11:27 stderr.txt
[2025-10-12 11:27:33] HITS file was successfully produced:
[2025-10-12 11:27:33] -rw------- 1 boinc boinc 194196259 Oct 12 11:26 shared/HITS.pool.root.1
[2025-10-12 11:27:33]  *** Contents of shared directory: ***
[2025-10-12 11:27:33] total 411564
[2025-10-12 11:27:33] -rw-r--r-- 2 boinc boinc 225664141 Oct 12 10:05 ATLAS.root_0
[2025-10-12 11:27:33] -rw-r--r-- 2 boinc boinc    569678 Oct 12 10:05 input.tar.gz
[2025-10-12 11:27:33] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:05 start_atlas.sh
[2025-10-12 11:27:33] -rw------- 1 boinc boinc 194196259 Oct 12 11:26 HITS.pool.root.1
[2025-10-12 11:27:33] -rw------- 1 boinc boinc    983040 Oct 12 11:27 result.tar.gz
11:27:35 (2459445): run_atlas exited; CPU time 13992.362852
11:27:35 (2459445): called boinc_finish(0)

</stderr_txt>
]]>

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