Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:11:42 (3341182): wrapper (7.7.26015): starting
09:11:42 (3341182): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 09:11:42] Arguments: --nthreads 2
[2025-10-12 09:11:42] Threads: 2
[2025-10-12 09:11:42] Checking for CVMFS
[2025-10-12 09:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:11:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:11:42] 2.9.2.0 2081766 5527 60276 151611 0 57 6104381 36864000 0 130560 0 3317659 99.988 187866 855 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 09:11:42] CVMFS is ok
[2025-10-12 09:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:11:42] Further information can be found at the LHC@home message board.
[2025-10-12 09:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:11:42] Checking for apptainer binary...
[2025-10-12 09:11:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:11:42] Running /usr/bin/apptainer --version
[2025-10-12 09:11:42] apptainer version 1.4.1-1.1
[2025-10-12 09:11:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:11:42] atlasA221
[2025-10-12 09:11:42] apptainer works
[2025-10-12 09:11:42] Set ATHENA_PROC_NUMBER=2
[2025-10-12 09:11:42] Set ATHENA_CORE_NUMBER=2
[2025-10-12 09:11:43] Starting ATLAS job with PandaID=6838450912
[2025-10-12 09:11:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:13:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:13:11] 2025-10-12 09:12:27,133 | INFO     | overall cleanup function is called
[2025-10-12 11:13:11] 2025-10-12 09:12:28,139 | INFO     | --- collectZombieJob: --- 10, [3351296]
[2025-10-12 11:13:11] 2025-10-12 09:12:28,139 | INFO     | zombie collector waiting for pid 3351296
[2025-10-12 11:13:11] 2025-10-12 09:12:28,140 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:13:11] 2025-10-12 09:12:28,140 | INFO     | collected zombie processes
[2025-10-12 11:13:11] 2025-10-12 09:12:28,141 | INFO     | will attempt to kill all subprocesses of pid=3351296
[2025-10-12 11:13:11] 2025-10-12 09:12:28,175 | INFO     | process IDs to be killed: [3351296] (in reverse order)
[2025-10-12 11:13:11] 2025-10-12 09:12:28,196 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:13:11] 2025-10-12 09:12:28,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:13:11] 2025-10-12 09:12:28,197 | INFO     | did not find any defunct processes belonging to 3351296
[2025-10-12 11:13:11] 2025-10-12 09:12:28,197 | INFO     | did not find any defunct processes belonging to 3351296
[2025-10-12 11:13:11] 2025-10-12 09:12:28,198 | INFO     | ready for new job
[2025-10-12 11:13:11] 2025-10-12 09:12:28,198 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:13:11] 2025-10-12 09:12:28,198 | INFO     | ***************************************
[2025-10-12 11:13:11] 2025-10-12 09:12:28,198 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:13:11] 2025-10-12 09:12:28,198 | INFO     | ***************************************
[2025-10-12 11:13:11] 2025-10-12 09:12:28,198 | INFO     | 
[2025-10-12 11:13:11] 2025-10-12 09:12:28,198 | INFO     | architecture information:
[2025-10-12 11:13:11] 2025-10-12 09:12:28,199 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:13:11] 2025-10-12 09:12:28,206 | INFO     | cat /etc/os-release:
[2025-10-12 11:13:11] NAME="CentOS Linux"
[2025-10-12 11:13:11] VERSION="7 (Core)"
[2025-10-12 11:13:11] ID="centos"
[2025-10-12 11:13:11] ID_LIKE="rhel fedora"
[2025-10-12 11:13:11] VERSION_ID="7"
[2025-10-12 11:13:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:13:11] ANSI_COLOR="0;31"
[2025-10-12 11:13:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:13:11] HOME_URL="https://www.centos.org/"
[2025-10-12 11:13:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:13:11] 
[2025-10-12 11:13:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:13:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:13:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:13:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:13:11] 
[2025-10-12 11:13:11] 2025-10-12 09:12:28,206 | INFO     | ***************************************
[2025-10-12 11:13:11] 2025-10-12 09:12:28,710 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 11:13:11] 2025-10-12 09:12:28,721 | INFO     | sufficient remaining disk space (204034015232 B)
[2025-10-12 11:13:11] 2025-10-12 09:12:28,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:13:11] 2025-10-12 09:12:28,722 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:13:11] 2025-10-12 09:12:28,722 | INFO     | update_server=False
[2025-10-12 11:13:11] 2025-10-12 09:12:28,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:13:11] 2025-10-12 09:12:28,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:13:11] 2025-10-12 09:12:28,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:13:11] 2025-10-12 09:12:28,722 | INFO     | aborting loop
[2025-10-12 11:13:11] 2025-10-12 09:12:29,449 | INFO     | all data control threads have been joined
[2025-10-12 11:13:11] 2025-10-12 09:12:29,486 | INFO     | all payload control threads have been joined
[2025-10-12 11:13:11] 2025-10-12 09:12:29,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:13:11] 2025-10-12 09:12:29,725 | INFO     | all job control threads have been joined
[2025-10-12 11:13:11] 2025-10-12 09:12:29,726 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:29,727 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:29,727 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:13:11] 2025-10-12 09:12:30,329 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,455 | INFO     | [data] control thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,492 | INFO     | [payload] control thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,567 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,732 | INFO     | [job] control thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,816 | INFO     | [job] validate thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,898 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:30,952 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:31,062 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:31,210 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:31,655 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:34,286 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:39,327 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:13:11] 2025-10-12 09:12:40,334 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:13:11] 2025-10-12 09:12:59,292 | INFO     | PID=3344888 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 11:13:11] 2025-10-12 09:12:59,292 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:13:11] 2025-10-12 09:12:59,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:13:11] 2025-10-12 09:12:59,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:13:11] 2025-10-12 09:13:05,371 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:13:11] 2025-10-12 09:13:06,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140048808888128)>', '<ExcThread(monitor, started 140048313857792)>']
[2025-10-12 11:13:11] 2025-10-12 09:13:07,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:13:11] 2025-10-12 09:13:07,334 | INFO     | [monitor] control thread has ended
[2025-10-12 11:13:11] 2025-10-12 09:13:11,404 | INFO     | all workflow threads have been joined
[2025-10-12 11:13:11] 2025-10-12 09:13:11,404 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:13:11] 2025-10-12 09:13:11,405 | INFO     | traces error code: 0
[2025-10-12 11:13:11] 2025-10-12 09:13:11,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:13:11] 2025-10-12 09:13:11,447 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:13:11] 2025-10-12 09:13:11,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:13:11] 2025-10-12 09:13:11,452 [wrapper] pilotpid: 3344888
[2025-10-12 11:13:11] 2025-10-12 09:13:11,455 [wrapper] Pilot exit status: 0
[2025-10-12 11:13:11] 2025-10-12 09:13:11,462 [wrapper] pandaids: 6838450912
[2025-10-12 11:13:11] 2025-10-12 09:13:11,475 [wrapper] cleanup supervisor_pilot 3365502 3344889
[2025-10-12 11:13:11] 2025-10-12 09:13:11,478 [wrapper] Test setup, not cleaning
[2025-10-12 11:13:11] 2025-10-12 09:13:11,480 [wrapper] apfmon messages muted
[2025-10-12 11:13:11] 2025-10-12 09:13:11,482 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:13:11] 2025-10-12 09:13:11,485 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:13:11]  *** Error codes and diagnostics ***
[2025-10-12 11:13:11]     "exeErrorCode": 0,
[2025-10-12 11:13:11]     "exeErrorDiag": "",
[2025-10-12 11:13:11]     "pilotErrorCode": 0,
[2025-10-12 11:13:11]     "pilotErrorDiag": "",
[2025-10-12 11:13:11]  *** Listing of results directory ***
[2025-10-12 11:13:11] total 411240
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc    557409 Oct 11 14:28 pilot3.tar.gz
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc      5112 Oct 11 14:45 queuedata.json
[2025-10-12 11:13:11] -rwx------ 1 boinc boinc     36292 Oct 11 14:46 runpilot2-wrapper.sh
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc       100 Oct 12 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:13:11] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 09:11 run_atlas
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc       105 Oct 12 09:11 job.xml
[2025-10-12 11:13:11] -rw-r--r-- 2 boinc boinc 225072334 Oct 12 09:11 EVNT.46676267._002320.pool.root.1
[2025-10-12 11:13:11] -rw-r--r-- 2 boinc boinc    569685 Oct 12 09:11 input.tar.gz
[2025-10-12 11:13:11] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:11 start_atlas.sh
[2025-10-12 11:13:11] drwxrwx--x 2 boinc boinc      4096 Oct 12 09:11 shared
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:11 boinc_setup_complete
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc      6285 Oct 12 09:11 init_data.xml
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:11 boinc_lockfile
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc      2550 Oct 12 09:11 pandaJob.out
[2025-10-12 11:13:11] -rw------- 1 boinc boinc    975528 Oct 12 09:11 agis_schedconf.cvmfs.json
[2025-10-12 11:13:11] -rw------- 1 boinc boinc   1560580 Oct 12 09:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:13:11] drwx------ 5 boinc boinc      4096 Oct 12 09:11 pilot3
[2025-10-12 11:13:11] -rw------- 1 boinc boinc 189512238 Oct 12 11:12 HITS.46676269._057859.pool.root.1
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc       529 Oct 12 11:12 boinc_task_state.xml
[2025-10-12 11:13:11] -rw------- 1 boinc boinc      1017 Oct 12 11:12 memory_monitor_summary.json
[2025-10-12 11:13:11] -rw------- 1 boinc boinc    277321 Oct 12 11:12 log.46676269._057859.job.log.tgz.1
[2025-10-12 11:13:11] -rw------- 1 boinc boinc      7758 Oct 12 11:12 heartbeat.json
[2025-10-12 11:13:11] -rw------- 1 boinc boinc        95 Oct 12 11:12 pilot_heartbeat.json
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc      8192 Oct 12 11:13 boinc_mmap_file
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc        27 Oct 12 11:13 wrapper_checkpoint.txt
[2025-10-12 11:13:11] -rw------- 1 boinc boinc      4824 Oct 12 11:13 pilotlog.txt
[2025-10-12 11:13:11] -rw------- 1 boinc boinc   1040239 Oct 12 11:13 log.46676269._057859.job.log.1
[2025-10-12 11:13:11] -rw------- 1 boinc boinc       357 Oct 12 11:13 output.list
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc       620 Oct 12 11:13 runtime_log
[2025-10-12 11:13:11] -rw------- 1 boinc boinc   1341440 Oct 12 11:13 result.tar.gz
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc      8792 Oct 12 11:13 runtime_log.err
[2025-10-12 11:13:11] -rw------- 1 boinc boinc       662 Oct 12 11:13 dAmKDmFAoR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmwtRMDmxvCDVm.diag
[2025-10-12 11:13:11] -rw-r--r-- 1 boinc boinc     10803 Oct 12 11:13 stderr.txt
[2025-10-12 11:13:11] HITS file was successfully produced:
[2025-10-12 11:13:11] -rw------- 1 boinc boinc 189512238 Oct 12 11:12 shared/HITS.pool.root.1
[2025-10-12 11:13:11]  *** Contents of shared directory: ***
[2025-10-12 11:13:11] total 406760
[2025-10-12 11:13:11] -rw-r--r-- 2 boinc boinc 225072334 Oct 12 09:11 ATLAS.root_0
[2025-10-12 11:13:11] -rw-r--r-- 2 boinc boinc    569685 Oct 12 09:11 input.tar.gz
[2025-10-12 11:13:11] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:11 start_atlas.sh
[2025-10-12 11:13:11] -rw------- 1 boinc boinc 189512238 Oct 12 11:12 HITS.pool.root.1
[2025-10-12 11:13:11] -rw------- 1 boinc boinc   1341440 Oct 12 11:13 result.tar.gz
11:13:13 (3341182): run_atlas exited; CPU time 14088.981631
11:13:13 (3341182): called boinc_finish(0)

</stderr_txt>
]]>

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