Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:21:51 (3288316): wrapper (7.7.26015): starting
05:21:51 (3288316): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 05:21:51] Arguments: --nthreads 4
[2025-10-12 05:21:51] Threads: 4
[2025-10-12 05:21:51] Checking for CVMFS
[2025-10-12 05:21:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:21:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:21:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:21:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:21:51] 2.9.2.0 1999482 3722 93440 151606 3 56 33619739 36864001 0 130560 0 3339910 99.992 126892 1000 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 05:21:51] CVMFS is ok
[2025-10-12 05:21:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:21:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:21:51] Further information can be found at the LHC@home message board.
[2025-10-12 05:21:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:21:51] Checking for apptainer binary...
[2025-10-12 05:21:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:21:51] Running /usr/bin/apptainer --version
[2025-10-12 05:21:51] apptainer version 1.4.1-1.1
[2025-10-12 05:21:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:21:51] magicA250
[2025-10-12 05:21:51] apptainer works
[2025-10-12 05:21:51] Set ATHENA_PROC_NUMBER=4
[2025-10-12 05:21:51] Set ATHENA_CORE_NUMBER=4
[2025-10-12 05:21:51] Starting ATLAS job with PandaID=6838292639
[2025-10-12 05:21:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:33:16]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:33:16] 2025-10-12 04:32:44,603 | INFO     | --- collectZombieJob: --- 10, [3298699]
[2025-10-12 06:33:16] 2025-10-12 04:32:44,603 | INFO     | zombie collector waiting for pid 3298699
[2025-10-12 06:33:16] 2025-10-12 04:32:44,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:33:16] 2025-10-12 04:32:44,604 | INFO     | collected zombie processes
[2025-10-12 06:33:16] 2025-10-12 04:32:44,604 | INFO     | will attempt to kill all subprocesses of pid=3298699
[2025-10-12 06:33:16] 2025-10-12 04:32:44,648 | INFO     | process IDs to be killed: [3298699] (in reverse order)
[2025-10-12 06:33:16] 2025-10-12 04:32:44,681 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:33:16] 2025-10-12 04:32:44,682 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:33:16] 2025-10-12 04:32:44,683 | INFO     | did not find any defunct processes belonging to 3298699
[2025-10-12 06:33:16] 2025-10-12 04:32:44,685 | INFO     | did not find any defunct processes belonging to 3298699
[2025-10-12 06:33:16] 2025-10-12 04:32:44,685 | INFO     | ready for new job
[2025-10-12 06:33:16] 2025-10-12 04:32:44,685 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:33:16] 2025-10-12 04:32:44,686 | INFO     | ***************************************
[2025-10-12 06:33:16] 2025-10-12 04:32:44,686 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:33:16] 2025-10-12 04:32:44,686 | INFO     | ***************************************
[2025-10-12 06:33:16] 2025-10-12 04:32:44,686 | INFO     | 
[2025-10-12 06:33:16] 2025-10-12 04:32:44,686 | INFO     | architecture information:
[2025-10-12 06:33:16] 2025-10-12 04:32:44,686 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:33:16] 2025-10-12 04:32:44,700 | INFO     | cat /etc/os-release:
[2025-10-12 06:33:16] NAME="CentOS Linux"
[2025-10-12 06:33:16] VERSION="7 (Core)"
[2025-10-12 06:33:16] ID="centos"
[2025-10-12 06:33:16] ID_LIKE="rhel fedora"
[2025-10-12 06:33:16] VERSION_ID="7"
[2025-10-12 06:33:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:33:16] ANSI_COLOR="0;31"
[2025-10-12 06:33:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:33:16] HOME_URL="https://www.centos.org/"
[2025-10-12 06:33:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:33:16] 
[2025-10-12 06:33:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:33:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:33:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:33:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:33:16] 
[2025-10-12 06:33:16] 2025-10-12 04:32:44,701 | INFO     | ***************************************
[2025-10-12 06:33:16] 2025-10-12 04:32:45,204 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 06:33:16] 2025-10-12 04:32:45,222 | INFO     | sufficient remaining disk space (325873303552 B)
[2025-10-12 06:33:16] 2025-10-12 04:32:45,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:33:16] 2025-10-12 04:32:45,222 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:33:16] 2025-10-12 04:32:45,222 | INFO     | update_server=False
[2025-10-12 06:33:16] 2025-10-12 04:32:45,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:33:16] 2025-10-12 04:32:45,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:33:16] 2025-10-12 04:32:45,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:33:16] 2025-10-12 04:32:45,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:33:16] 2025-10-12 04:32:45,223 | INFO     | aborting loop
[2025-10-12 06:33:16] 2025-10-12 04:32:45,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:33:16] 2025-10-12 04:32:45,668 | INFO     | all payload control threads have been joined
[2025-10-12 06:33:16] 2025-10-12 04:32:46,024 | INFO     | all job control threads have been joined
[2025-10-12 06:33:16] 2025-10-12 04:32:46,214 | INFO     | all data control threads have been joined
[2025-10-12 06:33:16] 2025-10-12 04:32:46,228 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:46,229 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:46,229 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:46,256 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:46,391 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:46,446 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:46,674 | INFO     | [payload] control thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:47,017 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:47,029 | INFO     | [job] control thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:47,220 | INFO     | [data] control thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:47,221 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:47,229 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:47,479 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:47,693 | INFO     | [job] validate thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:49,548 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:32:55,773 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:33:16] 2025-10-12 04:32:56,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:33:16] 2025-10-12 04:33:04,376 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:33:16] 2025-10-12 04:33:04,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218040846144)>', '<ExcThread(monitor, started 140217075865344)>']
[2025-10-12 06:33:16] 2025-10-12 04:33:09,683 | INFO     | all workflow threads have been joined
[2025-10-12 06:33:16] 2025-10-12 04:33:09,683 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:33:16] 2025-10-12 04:33:09,683 | INFO     | traces error code: 0
[2025-10-12 06:33:16] 2025-10-12 04:33:09,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:33:16] 2025-10-12 04:33:16,044 | INFO     | PID=3292101 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:33:16] 2025-10-12 04:33:16,044 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:33:16] 2025-10-12 04:33:16,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:33:16] 2025-10-12 04:33:16,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:33:16] 2025-10-12 04:33:16,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:33:16] 2025-10-12 04:33:16,044 | INFO     | [monitor] control thread has ended
[2025-10-12 06:33:16] 2025-10-12 04:33:16,120 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:33:16] 2025-10-12 04:33:16,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:33:16] 2025-10-12 04:33:16,128 [wrapper] pilotpid: 3292101
[2025-10-12 06:33:16] 2025-10-12 04:33:16,132 [wrapper] Pilot exit status: 0
[2025-10-12 06:33:16] 2025-10-12 04:33:16,144 [wrapper] pandaids: 6838292639
[2025-10-12 06:33:16] 2025-10-12 04:33:16,165 [wrapper] cleanup supervisor_pilot 3308768 3292102
[2025-10-12 06:33:16] 2025-10-12 04:33:16,170 [wrapper] Test setup, not cleaning
[2025-10-12 06:33:16] 2025-10-12 04:33:16,174 [wrapper] apfmon messages muted
[2025-10-12 06:33:16] 2025-10-12 04:33:16,177 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:33:16] 2025-10-12 04:33:16,181 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:33:16]  *** Error codes and diagnostics ***
[2025-10-12 06:33:16]     "exeErrorCode": 0,
[2025-10-12 06:33:16]     "exeErrorDiag": "",
[2025-10-12 06:33:16]     "pilotErrorCode": 0,
[2025-10-12 06:33:16]     "pilotErrorDiag": "",
[2025-10-12 06:33:16]  *** Listing of results directory ***
[2025-10-12 06:33:16] total 413004
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc    557409 Oct 11 11:03 pilot3.tar.gz
[2025-10-12 06:33:16] -rwx------ 1 boinc boinc     36292 Oct 11 11:13 runpilot2-wrapper.sh
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc      5112 Oct 11 11:13 queuedata.json
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc       100 Oct 12 05:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:33:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 05:21 run_atlas
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc       105 Oct 12 05:21 job.xml
[2025-10-12 06:33:16] -rw-r--r-- 2 boinc boinc 224007151 Oct 12 05:21 EVNT.46676267._002208.pool.root.1
[2025-10-12 06:33:16] -rw-r--r-- 2 boinc boinc    569672 Oct 12 05:21 input.tar.gz
[2025-10-12 06:33:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:21 start_atlas.sh
[2025-10-12 06:33:16] drwxrwx--x 2 boinc boinc      4096 Oct 12 05:21 shared
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:21 boinc_setup_complete
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc      6378 Oct 12 05:21 init_data.xml
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:21 boinc_lockfile
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc      2549 Oct 12 05:21 pandaJob.out
[2025-10-12 06:33:16] -rw------- 1 boinc boinc    975512 Oct 12 05:21 agis_schedconf.cvmfs.json
[2025-10-12 06:33:16] -rw------- 1 boinc boinc   1560580 Oct 12 05:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:33:16] drwx------ 5 boinc boinc      4096 Oct 12 05:22 pilot3
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc       529 Oct 12 06:32 boinc_task_state.xml
[2025-10-12 06:33:16] -rw------- 1 boinc boinc 193209944 Oct 12 06:32 HITS.46676269._055078.pool.root.1
[2025-10-12 06:33:16] -rw------- 1 boinc boinc        95 Oct 12 06:32 pilot_heartbeat.json
[2025-10-12 06:33:16] -rw------- 1 boinc boinc      1025 Oct 12 06:32 memory_monitor_summary.json
[2025-10-12 06:33:16] -rw------- 1 boinc boinc    276054 Oct 12 06:32 log.46676269._055078.job.log.tgz.1
[2025-10-12 06:33:16] -rw------- 1 boinc boinc      7777 Oct 12 06:32 heartbeat.json
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc      8192 Oct 12 06:32 boinc_mmap_file
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc        27 Oct 12 06:32 wrapper_checkpoint.txt
[2025-10-12 06:33:16] -rw------- 1 boinc boinc       747 Oct 12 06:33 pilotlog.txt
[2025-10-12 06:33:16] -rw------- 1 boinc boinc    630762 Oct 12 06:33 log.46676269._055078.job.log.1
[2025-10-12 06:33:16] -rw------- 1 boinc boinc       357 Oct 12 06:33 output.list
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc       620 Oct 12 06:33 runtime_log
[2025-10-12 06:33:16] -rw------- 1 boinc boinc    921600 Oct 12 06:33 result.tar.gz
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc      8792 Oct 12 06:33 runtime_log.err
[2025-10-12 06:33:16] -rw------- 1 boinc boinc       661 Oct 12 06:33 V0iNDm6pkR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmt0fNDm5IdAYm.diag
[2025-10-12 06:33:16] -rw-r--r-- 1 boinc boinc     10711 Oct 12 06:33 stderr.txt
[2025-10-12 06:33:16] HITS file was successfully produced:
[2025-10-12 06:33:16] -rw------- 1 boinc boinc 193209944 Oct 12 06:32 shared/HITS.pool.root.1
[2025-10-12 06:33:16]  *** Contents of shared directory: ***
[2025-10-12 06:33:16] total 408928
[2025-10-12 06:33:16] -rw-r--r-- 2 boinc boinc 224007151 Oct 12 05:21 ATLAS.root_0
[2025-10-12 06:33:16] -rw-r--r-- 2 boinc boinc    569672 Oct 12 05:21 input.tar.gz
[2025-10-12 06:33:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:21 start_atlas.sh
[2025-10-12 06:33:16] -rw------- 1 boinc boinc 193209944 Oct 12 06:32 HITS.pool.root.1
[2025-10-12 06:33:16] -rw------- 1 boinc boinc    921600 Oct 12 06:33 result.tar.gz
06:33:17 (3288316): run_atlas exited; CPU time 16012.857844
06:33:17 (3288316): called boinc_finish(0)

</stderr_txt>
]]>

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