Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:40:11 (2614186): wrapper (7.7.26015): starting
05:40:11 (2614186): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 05:40:11] Arguments: --nthreads 3
[2025-10-12 05:40:11] Threads: 3
[2025-10-12 05:40:11] Checking for CVMFS
[2025-10-12 05:40:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:40:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:40:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:40:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:40:12] 2.9.2.0 1520902 3672 85620 151606 3 57 23049857 36864000 0 130560 0 2889379 99.991 125524 1096 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 05:40:12] CVMFS is ok
[2025-10-12 05:40:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:40:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:40:12] Further information can be found at the LHC@home message board.
[2025-10-12 05:40:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:40:12] Checking for apptainer binary...
[2025-10-12 05:40:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:40:12] Running /usr/bin/apptainer --version
[2025-10-12 05:40:12] apptainer version 1.4.1-1.1
[2025-10-12 05:40:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:40:12] magicA250a
[2025-10-12 05:40:12] apptainer works
[2025-10-12 05:40:12] Set ATHENA_PROC_NUMBER=3
[2025-10-12 05:40:12] Set ATHENA_CORE_NUMBER=3
[2025-10-12 05:40:12] Starting ATLAS job with PandaID=6838117545
[2025-10-12 05:40:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:02:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:02:32] 2025-10-12 05:02:02,334 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:02:32] 2025-10-12 05:02:02,336 | INFO     | did not find any defunct processes belonging to 2624335
[2025-10-12 07:02:32] 2025-10-12 05:02:02,337 | INFO     | did not find any defunct processes belonging to 2624335
[2025-10-12 07:02:32] 2025-10-12 05:02:02,337 | INFO     | ready for new job
[2025-10-12 07:02:32] 2025-10-12 05:02:02,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:02:32] 2025-10-12 05:02:02,337 | INFO     | ***************************************
[2025-10-12 07:02:32] 2025-10-12 05:02:02,337 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:02:32] 2025-10-12 05:02:02,337 | INFO     | ***************************************
[2025-10-12 07:02:32] 2025-10-12 05:02:02,337 | INFO     | 
[2025-10-12 07:02:32] 2025-10-12 05:02:02,338 | INFO     | architecture information:
[2025-10-12 07:02:32] 2025-10-12 05:02:02,338 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:02:32] 2025-10-12 05:02:02,346 | INFO     | cat /etc/os-release:
[2025-10-12 07:02:32] NAME="CentOS Linux"
[2025-10-12 07:02:32] VERSION="7 (Core)"
[2025-10-12 07:02:32] ID="centos"
[2025-10-12 07:02:32] ID_LIKE="rhel fedora"
[2025-10-12 07:02:32] VERSION_ID="7"
[2025-10-12 07:02:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:02:32] ANSI_COLOR="0;31"
[2025-10-12 07:02:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:02:32] HOME_URL="https://www.centos.org/"
[2025-10-12 07:02:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:02:32] 
[2025-10-12 07:02:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:02:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:02:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:02:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:02:32] 
[2025-10-12 07:02:32] 2025-10-12 05:02:02,347 | INFO     | ***************************************
[2025-10-12 07:02:32] 2025-10-12 05:02:02,850 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 07:02:32] 2025-10-12 05:02:02,861 | INFO     | sufficient remaining disk space (336925294592 B)
[2025-10-12 07:02:32] 2025-10-12 05:02:02,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:02:32] 2025-10-12 05:02:02,861 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:02:32] 2025-10-12 05:02:02,861 | INFO     | update_server=False
[2025-10-12 07:02:32] 2025-10-12 05:02:02,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:02:32] 2025-10-12 05:02:02,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:02:32] 2025-10-12 05:02:02,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:02:32] 2025-10-12 05:02:03,226 | INFO     | all job control threads have been joined
[2025-10-12 07:02:32] 2025-10-12 05:02:03,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:02:32] 2025-10-12 05:02:03,407 | INFO     | aborting loop
[2025-10-12 07:02:32] 2025-10-12 05:02:03,425 | INFO     | all data control threads have been joined
[2025-10-12 07:02:32] 2025-10-12 05:02:03,446 | INFO     | all payload control threads have been joined
[2025-10-12 07:02:32] 2025-10-12 05:02:03,867 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:03,867 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,228 | INFO     | [job] control thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,247 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,385 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,413 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,430 | INFO     | [data] control thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,452 | INFO     | [payload] control thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,498 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:04,867 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:05,030 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:05,260 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:05,260 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:05,281 | INFO     | [job] validate thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:05,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:02:32] 2025-10-12 05:02:09,392 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:02:32] 2025-10-12 05:02:23,385 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:02:32] 2025-10-12 05:02:24,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961238230848)>', '<ExcThread(monitor, started 139960728397568)>']
[2025-10-12 07:02:32] 2025-10-12 05:02:29,057 | INFO     | all workflow threads have been joined
[2025-10-12 07:02:32] 2025-10-12 05:02:29,057 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:02:32] 2025-10-12 05:02:29,057 | INFO     | traces error code: 0
[2025-10-12 07:02:32] 2025-10-12 05:02:29,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:02:32] 2025-10-12 05:02:32,366 | INFO     | PID=2617905 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 07:02:32] 2025-10-12 05:02:32,367 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:02:32] 2025-10-12 05:02:32,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:02:32] 2025-10-12 05:02:32,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:02:32] 2025-10-12 05:02:32,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:02:32] 2025-10-12 05:02:32,367 | INFO     | [monitor] control thread has ended
[2025-10-12 07:02:32] 2025-10-12 05:02:32,413 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:02:32] 2025-10-12 05:02:32,415 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:02:32] 2025-10-12 05:02:32,417 [wrapper] pilotpid: 2617905
[2025-10-12 07:02:32] 2025-10-12 05:02:32,419 [wrapper] Pilot exit status: 0
[2025-10-12 07:02:32] 2025-10-12 05:02:32,426 [wrapper] pandaids: 6838117545
[2025-10-12 07:02:32] 2025-10-12 05:02:32,442 [wrapper] cleanup supervisor_pilot 2636111 2617906
[2025-10-12 07:02:32] 2025-10-12 05:02:32,444 [wrapper] Test setup, not cleaning
[2025-10-12 07:02:32] 2025-10-12 05:02:32,447 [wrapper] apfmon messages muted
[2025-10-12 07:02:32] 2025-10-12 05:02:32,449 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:02:32] 2025-10-12 05:02:32,451 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:02:32]  *** Error codes and diagnostics ***
[2025-10-12 07:02:32]     "exeErrorCode": 0,
[2025-10-12 07:02:32]     "exeErrorDiag": "",
[2025-10-12 07:02:32]     "pilotErrorCode": 0,
[2025-10-12 07:02:32]     "pilotErrorDiag": "",
[2025-10-12 07:02:32]  *** Listing of results directory ***
[2025-10-12 07:02:32] total 409488
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc    557409 Oct 11 07:36 pilot3.tar.gz
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc      5112 Oct 11 07:37 queuedata.json
[2025-10-12 07:02:32] -rwx------ 1 boinc boinc     36292 Oct 11 07:39 runpilot2-wrapper.sh
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc       100 Oct 12 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:02:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 05:40 run_atlas
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc       105 Oct 12 05:40 job.xml
[2025-10-12 07:02:32] -rw-r--r-- 2 boinc boinc 220687619 Oct 12 05:40 EVNT.46676267._002095.pool.root.1
[2025-10-12 07:02:32] -rw-r--r-- 2 boinc boinc    569675 Oct 12 05:40 input.tar.gz
[2025-10-12 07:02:32] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:40 start_atlas.sh
[2025-10-12 07:02:32] drwxrwx--x 2 boinc boinc      4096 Oct 12 05:40 shared
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:40 boinc_setup_complete
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc      6442 Oct 12 05:40 init_data.xml
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:40 boinc_lockfile
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc      2550 Oct 12 05:40 pandaJob.out
[2025-10-12 07:02:32] -rw------- 1 boinc boinc    975512 Oct 12 05:40 agis_schedconf.cvmfs.json
[2025-10-12 07:02:32] -rw------- 1 boinc boinc   1560580 Oct 12 05:40 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:02:32] drwx------ 5 boinc boinc      4096 Oct 12 05:40 pilot3
[2025-10-12 07:02:32] -rw------- 1 boinc boinc 192771859 Oct 12 07:01 HITS.46676269._052137.pool.root.1
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc       529 Oct 12 07:01 boinc_task_state.xml
[2025-10-12 07:02:32] -rw------- 1 boinc boinc        95 Oct 12 07:01 pilot_heartbeat.json
[2025-10-12 07:02:32] -rw------- 1 boinc boinc      1021 Oct 12 07:01 memory_monitor_summary.json
[2025-10-12 07:02:32] -rw------- 1 boinc boinc    261335 Oct 12 07:01 log.46676269._052137.job.log.tgz.1
[2025-10-12 07:02:32] -rw------- 1 boinc boinc      7778 Oct 12 07:02 heartbeat.json
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc        27 Oct 12 07:02 wrapper_checkpoint.txt
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc      8192 Oct 12 07:02 boinc_mmap_file
[2025-10-12 07:02:32] -rw------- 1 boinc boinc       747 Oct 12 07:02 pilotlog.txt
[2025-10-12 07:02:32] -rw------- 1 boinc boinc    721327 Oct 12 07:02 log.46676269._052137.job.log.1
[2025-10-12 07:02:32] -rw------- 1 boinc boinc       357 Oct 12 07:02 output.list
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc       620 Oct 12 07:02 runtime_log
[2025-10-12 07:02:32] -rw------- 1 boinc boinc   1003520 Oct 12 07:02 result.tar.gz
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc      8797 Oct 12 07:02 runtime_log.err
[2025-10-12 07:02:32] -rw------- 1 boinc boinc       662 Oct 12 07:02 2Q0NDmiVhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFXfNDmuXVafn.diag
[2025-10-12 07:02:32] -rw-r--r-- 1 boinc boinc      9866 Oct 12 07:02 stderr.txt
[2025-10-12 07:02:32] HITS file was successfully produced:
[2025-10-12 07:02:32] -rw------- 1 boinc boinc 192771859 Oct 12 07:01 shared/HITS.pool.root.1
[2025-10-12 07:02:32]  *** Contents of shared directory: ***
[2025-10-12 07:02:32] total 405336
[2025-10-12 07:02:32] -rw-r--r-- 2 boinc boinc 220687619 Oct 12 05:40 ATLAS.root_0
[2025-10-12 07:02:32] -rw-r--r-- 2 boinc boinc    569675 Oct 12 05:40 input.tar.gz
[2025-10-12 07:02:32] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:40 start_atlas.sh
[2025-10-12 07:02:32] -rw------- 1 boinc boinc 192771859 Oct 12 07:01 HITS.pool.root.1
[2025-10-12 07:02:32] -rw------- 1 boinc boinc   1003520 Oct 12 07:02 result.tar.gz
07:02:34 (2614186): run_atlas exited; CPU time 14077.295334
07:02:34 (2614186): called boinc_finish(0)

</stderr_txt>
]]>

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