Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:34:32 (815559): wrapper (7.7.26015): starting
10:34:32 (815559): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 10:34:32] Arguments: --nthreads 4
[2025-10-12 10:34:32] Threads: 4
[2025-10-12 10:34:32] Checking for CVMFS
[2025-10-12 10:34:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:34:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:34:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:34:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:34:32] 2.9.2.0 3649848 3919 96436 151613 3 56 22647988 36864001 0 130560 0 3532151 99.992 137407 910 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 10:34:32] CVMFS is ok
[2025-10-12 10:34:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:34:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:34:32] Further information can be found at the LHC@home message board.
[2025-10-12 10:34:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:34:32] Checking for apptainer binary...
[2025-10-12 10:34:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:34:32] Running /usr/bin/apptainer --version
[2025-10-12 10:34:32] apptainer version 1.4.1-1.1
[2025-10-12 10:34:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:34:32] thA352
[2025-10-12 10:34:32] apptainer works
[2025-10-12 10:34:32] Set ATHENA_PROC_NUMBER=4
[2025-10-12 10:34:32] Set ATHENA_CORE_NUMBER=4
[2025-10-12 10:34:32] Starting ATLAS job with PandaID=6837932464
[2025-10-12 10:34:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:47:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:47:05]  protocol_id=None
[2025-10-12 11:47:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 11:47:05]  replicas=None
[2025-10-12 11:47:05]  scope=mc23_13p6TeV
[2025-10-12 11:47:05]  status=None
[2025-10-12 11:47:05]  status_code=0
[2025-10-12 11:47:05]  storage_token=
[2025-10-12 11:47:05]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6837932464/log.46676269._048982.job.log.tgz.1
[2025-10-12 11:47:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/51/log.46676269._048982.job.log.tgz.1
[2025-10-12 11:47:05]  workdir=None
[2025-10-12 11:47:05] ]
[2025-10-12 11:47:05] 2025-10-12 09:46:27,391 | INFO     | transferring file log.46676269._048982.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6837932464/log.46676269._048982.job.log.tgz.1 to /local/data/boinc/
[2025-10-12 11:47:05] 2025-10-12 09:46:27,391 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6837932464/log.46676269._048982.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0489
[2025-10-12 11:47:05] 2025-10-12 09:46:27,409 | INFO     | adding to output.list: log.46676269._048982.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/51/log.46676269._048982.job.log.tg
[2025-10-12 11:47:05] 2025-10-12 09:46:27,410 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:47:05] 2025-10-12 09:46:27,410 | INFO     | summary of transferred files:
[2025-10-12 11:47:05] 2025-10-12 09:46:27,410 | INFO     |  -- lfn=log.46676269._048982.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:47:05] 2025-10-12 09:46:27,410 | INFO     | stage-out finished correctly
[2025-10-12 11:47:05] 2025-10-12 09:46:27,689 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:47:05] 2025-10-12 09:46:28,018 | INFO     | time since job start (4308s) is within the limit (172800.0s)
[2025-10-12 11:47:05] 2025-10-12 09:46:28,820 | INFO     | job 6837932464 has state=finished
[2025-10-12 11:47:05] 2025-10-12 09:46:28,821 | INFO     | preparing for final server update for job 6837932464 in state='finished'
[2025-10-12 11:47:05] 2025-10-12 09:46:28,821 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:47:05] 2025-10-12 09:46:28,821 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:47:05] 2025-10-12 09:46:28,821 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:47:05] 2025-10-12 09:46:28,821 | INFO     | job 6837932464 has finished - writing final server update
[2025-10-12 11:47:05] 2025-10-12 09:46:28,822 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:47:05] 2025-10-12 09:46:28,822 | INFO     | executing command: lscpu
[2025-10-12 11:47:05] 2025-10-12 09:46:28,843 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:47:05] 2025-10-12 09:46:30,024 | INFO     | time since job start (4310s) is within the limit (172800.0s)
[2025-10-12 11:47:05] 2025-10-12 09:46:31,883 | WARNING  | process 825913 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 11:47:05] 2025-10-12 09:46:31,883 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6837932464/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:47:05] 2025-10-12 09:46:31,924 | INFO     | number of running child processes to parent process 825913: 1
[2025-10-12 11:47:05] 2025-10-12 09:46:31,924 | INFO     | maximum number of monitored processes: 6
[2025-10-12 11:47:05] 2025-10-12 09:46:32,029 | INFO     | time since job start (4312s) is within the limit (172800.0s)
[2025-10-12 11:47:05] 2025-10-12 09:46:33,114 | INFO     | PID=819343 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 11:47:05] 2025-10-12 09:46:33,510 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 11:47:05] 2025-10-12 09:46:33,511 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3176.651125
[2025-10-12 11:47:05] 2025-10-12 09:46:33,513 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6837932464/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:47:05] 2025-10-12 09:46:33,513 | INFO     | extracted standard info from prmon json
[2025-10-12 11:47:05] 2025-10-12 09:46:33,513 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:47:05] 2025-10-12 09:46:33,513 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:47:05] 2025-10-12 09:46:33,513 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:47:05] 2025-10-12 09:46:33,513 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | sum of deviations: -12264253801.0
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | mean x: 1760260330.5
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | mean y: 2592818.09375
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | -- intersect: 265650089122.6554
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | intersect: 265650089122.6554
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | chi2: 0.1143781997918217
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | -- intersect: 265650089122.6554
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | current memory leak: -150.91 B/s (using 64 data points, chi2=0.11)
[2025-10-12 11:47:05] 2025-10-12 09:46:33,514 | INFO     | could have reported an average CPU frequency of 3570 MHz (6 samples)
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | ..............................
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . Timing measurements:
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . get job = 0 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . initial setup = 1 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . payload setup = 4 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . stage-in = 0 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . payload execution = 4284 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . stage-out = 0 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | . log creation = 0 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,515 | INFO     | ..............................
[2025-10-12 11:47:05] 2025-10-12 09:46:33,555 | INFO     | 
[2025-10-12 11:47:05] 2025-10-12 09:46:33,555 | INFO     | job summary report
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | --------------------------------------------------
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | PanDA job id: 6837932464
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | task id: 46676269
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | errors: (none)
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | pilot state: finished 
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | transexitcode: 0
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | exeerrorcode: 0
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | exeerrordiag: 
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | exitcode: 0
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | exitmsg: OK
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | cpuconsumptiontime: 16226 s
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | nevents: 400
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | neventsw: 0
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | pid: 825913
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | pgrp: 825913
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | corecount: 4
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | event service: False
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | sizes: {0: 2348689, 1: 2348888, 4: 2349150, 11: 2349178, 4291: 2375366, 4292: 2384553, 4298: 2384691}
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | --------------------------------------------------
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | 
[2025-10-12 11:47:05] 2025-10-12 09:46:33,556 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | job 6837932464 has completed (purged errors)
[2025-10-12 11:47:05] 2025-10-12 09:46:33,576 | INFO     | overall cleanup function is called
[2025-10-12 11:47:05] 2025-10-12 09:46:34,583 | INFO     | --- collectZombieJob: --- 10, [825913]
[2025-10-12 11:47:05] 2025-10-12 09:46:34,583 | INFO     | zombie collector waiting for pid 825913
[2025-10-12 11:47:05] 2025-10-12 09:46:34,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:47:05] 2025-10-12 09:46:34,583 | INFO     | collected zombie processes
[2025-10-12 11:47:05] 2025-10-12 09:46:34,583 | INFO     | will attempt to kill all subprocesses of pid=825913
[2025-10-12 11:47:05] 2025-10-12 09:46:34,627 | INFO     | process IDs to be killed: [825913] (in reverse order)
[2025-10-12 11:47:05] 2025-10-12 09:46:34,661 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:47:05] 2025-10-12 09:46:34,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:47:05] 2025-10-12 09:46:34,663 | INFO     | did not find any defunct processes belonging to 825913
[2025-10-12 11:47:05] 2025-10-12 09:46:34,664 | INFO     | did not find any defunct processes belonging to 825913
[2025-10-12 11:47:05] 2025-10-12 09:46:34,664 | INFO     | ready for new job
[2025-10-12 11:47:05] 2025-10-12 09:46:34,664 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:47:05] 2025-10-12 09:46:34,665 | INFO     | ***************************************
[2025-10-12 11:47:05] 2025-10-12 09:46:34,665 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:47:05] 2025-10-12 09:46:34,665 | INFO     | ***************************************
[2025-10-12 11:47:05] 2025-10-12 09:46:34,665 | INFO     | 
[2025-10-12 11:47:05] 2025-10-12 09:46:34,665 | INFO     | architecture information:
[2025-10-12 11:47:05] 2025-10-12 09:46:34,666 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:47:05] 2025-10-12 09:46:34,679 | INFO     | cat /etc/os-release:
[2025-10-12 11:47:05] NAME="CentOS Linux"
[2025-10-12 11:47:05] VERSION="7 (Core)"
[2025-10-12 11:47:05] ID="centos"
[2025-10-12 11:47:05] ID_LIKE="rhel fedora"
[2025-10-12 11:47:05] VERSION_ID="7"
[2025-10-12 11:47:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:47:05] ANSI_COLOR="0;31"
[2025-10-12 11:47:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:47:05] HOME_URL="https://www.centos.org/"
[2025-10-12 11:47:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:47:05] 
[2025-10-12 11:47:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:47:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:47:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:47:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:47:05] 
[2025-10-12 11:47:05] 2025-10-12 09:46:34,680 | INFO     | ***************************************
[2025-10-12 11:47:05] 2025-10-12 09:46:35,183 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 11:47:05] 2025-10-12 09:46:35,201 | INFO     | sufficient remaining disk space (235909677056 B)
[2025-10-12 11:47:05] 2025-10-12 09:46:35,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:47:05] 2025-10-12 09:46:35,202 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:47:05] 2025-10-12 09:46:35,202 | INFO     | update_server=False
[2025-10-12 11:47:05] 2025-10-12 09:46:35,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:47:05] 2025-10-12 09:46:35,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:47:05] 2025-10-12 09:46:35,262 | INFO     | all payload control threads have been joined
[2025-10-12 11:47:05] 2025-10-12 09:46:35,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:47:05] 2025-10-12 09:46:35,434 | INFO     | aborting loop
[2025-10-12 11:47:05] 2025-10-12 09:46:35,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:47:05] 2025-10-12 09:46:36,109 | INFO     | all data control threads have been joined
[2025-10-12 11:47:05] 2025-10-12 09:46:36,207 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:36,208 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:36,267 | INFO     | [payload] control thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:36,286 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:36,412 | INFO     | all job control threads have been joined
[2025-10-12 11:47:05] 2025-10-12 09:46:36,439 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:36,753 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:36,754 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:37,073 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:37,115 | INFO     | [data] control thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:37,418 | INFO     | [job] control thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:37,468 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:37,554 | INFO     | [job] validate thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:37,650 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:37,673 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:38,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:47:05] 2025-10-12 09:46:42,249 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:45,156 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:47:05] 2025-10-12 09:46:45,630 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:47:05] 2025-10-12 09:46:46,636 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:47:05] 2025-10-12 09:46:48,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140469449512768)>', '<ExcThread(monitor, started 140468365022976)>']
[2025-10-12 11:47:05] 2025-10-12 09:46:53,567 | INFO     | all workflow threads have been joined
[2025-10-12 11:47:05] 2025-10-12 09:46:53,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:47:05] 2025-10-12 09:46:53,567 | INFO     | traces error code: 0
[2025-10-12 11:47:05] 2025-10-12 09:46:53,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:47:05] 2025-10-12 09:47:05,235 | INFO     | PID=819343 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 11:47:05] 2025-10-12 09:47:05,236 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:47:05] 2025-10-12 09:47:05,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:47:05] 2025-10-12 09:47:05,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:47:05] 2025-10-12 09:47:05,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:47:05] 2025-10-12 09:47:05,236 | INFO     | [monitor] control thread has ended
[2025-10-12 11:47:05] 2025-10-12 09:47:05,314 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:47:05] 2025-10-12 09:47:05,318 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:47:05] 2025-10-12 09:47:05,322 [wrapper] pilotpid: 819343
[2025-10-12 11:47:05] 2025-10-12 09:47:05,326 [wrapper] Pilot exit status: 0
[2025-10-12 11:47:05] 2025-10-12 09:47:05,337 [wrapper] pandaids: 6837932464
[2025-10-12 11:47:05] 2025-10-12 09:47:05,359 [wrapper] cleanup supervisor_pilot  835895 819344
[2025-10-12 11:47:05] 2025-10-12 09:47:05,363 [wrapper] Test setup, not cleaning
[2025-10-12 11:47:05] 2025-10-12 09:47:05,366 [wrapper] apfmon messages muted
[2025-10-12 11:47:05] 2025-10-12 09:47:05,370 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:47:05] 2025-10-12 09:47:05,374 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:47:05]  *** Error codes and diagnostics ***
[2025-10-12 11:47:05]     "exeErrorCode": 0,
[2025-10-12 11:47:05]     "exeErrorDiag": "",
[2025-10-12 11:47:05]     "pilotErrorCode": 0,
[2025-10-12 11:47:05]     "pilotErrorDiag": "",
[2025-10-12 11:47:05]  *** Listing of results directory ***
[2025-10-12 11:47:05] total 411464
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc    557409 Oct 11 03:35 pilot3.tar.gz
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc      5112 Oct 11 03:59 queuedata.json
[2025-10-12 11:47:05] -rwx------ 1 boinc boinc     36292 Oct 11 03:59 runpilot2-wrapper.sh
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc       100 Oct 12 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:47:05] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 10:34 run_atlas
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc       105 Oct 12 10:34 job.xml
[2025-10-12 11:47:05] -rw-r--r-- 2 boinc boinc 221059563 Oct 12 10:34 EVNT.46676267._001975.pool.root.1
[2025-10-12 11:47:05] -rw-r--r-- 2 boinc boinc    569678 Oct 12 10:34 input.tar.gz
[2025-10-12 11:47:05] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:34 start_atlas.sh
[2025-10-12 11:47:05] drwxrwx--x 2 boinc boinc      4096 Oct 12 10:34 shared
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:34 boinc_setup_complete
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc      6371 Oct 12 10:34 init_data.xml
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:34 boinc_lockfile
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc      2550 Oct 12 10:34 pandaJob.out
[2025-10-12 11:47:05] -rw------- 1 boinc boinc    975520 Oct 12 10:34 agis_schedconf.cvmfs.json
[2025-10-12 11:47:05] -rw------- 1 boinc boinc   1560580 Oct 12 10:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:47:05] drwx------ 5 boinc boinc      4096 Oct 12 10:34 pilot3
[2025-10-12 11:47:05] -rw------- 1 boinc boinc 194566439 Oct 12 11:46 HITS.46676269._048982.pool.root.1
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc       529 Oct 12 11:46 boinc_task_state.xml
[2025-10-12 11:47:05] -rw------- 1 boinc boinc      1035 Oct 12 11:46 memory_monitor_summary.json
[2025-10-12 11:47:05] -rw------- 1 boinc boinc    266470 Oct 12 11:46 log.46676269._048982.job.log.tgz.1
[2025-10-12 11:47:05] -rw------- 1 boinc boinc      7767 Oct 12 11:46 heartbeat.json
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc      8192 Oct 12 11:46 boinc_mmap_file
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc        27 Oct 12 11:46 wrapper_checkpoint.txt
[2025-10-12 11:47:05] -rw------- 1 boinc boinc       746 Oct 12 11:47 pilotlog.txt
[2025-10-12 11:47:05] -rw------- 1 boinc boinc        95 Oct 12 11:47 pilot_heartbeat.json
[2025-10-12 11:47:05] -rw------- 1 boinc boinc    639254 Oct 12 11:47 log.46676269._048982.job.log.1
[2025-10-12 11:47:05] -rw------- 1 boinc boinc       357 Oct 12 11:47 output.list
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc       620 Oct 12 11:47 runtime_log
[2025-10-12 11:47:05] -rw------- 1 boinc boinc    921600 Oct 12 11:47 result.tar.gz
[2025-10-12 11:47:05] -rw------- 1 boinc boinc       658 Oct 12 11:47 rzbKDmd4dR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmFxQMDm78eYyn.diag
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc      8777 Oct 12 11:47 runtime_log.err
[2025-10-12 11:47:05] -rw-r--r-- 1 boinc boinc     21840 Oct 12 11:47 stderr.txt
[2025-10-12 11:47:05] HITS file was successfully produced:
[2025-10-12 11:47:05] -rw------- 1 boinc boinc 194566439 Oct 12 11:46 shared/HITS.pool.root.1
[2025-10-12 11:47:05]  *** Contents of shared directory: ***
[2025-10-12 11:47:05] total 407372
[2025-10-12 11:47:05] -rw-r--r-- 2 boinc boinc 221059563 Oct 12 10:34 ATLAS.root_0
[2025-10-12 11:47:05] -rw-r--r-- 2 boinc boinc    569678 Oct 12 10:34 input.tar.gz
[2025-10-12 11:47:05] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:34 start_atlas.sh
[2025-10-12 11:47:05] -rw------- 1 boinc boinc 194566439 Oct 12 11:46 HITS.pool.root.1
[2025-10-12 11:47:05] -rw------- 1 boinc boinc    921600 Oct 12 11:47 result.tar.gz
11:47:06 (815559): run_atlas exited; CPU time 16236.406705
11:47:06 (815559): called boinc_finish(0)

</stderr_txt>
]]>

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