Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:51:23 (2573496): wrapper (7.7.26015): starting
13:51:23 (2573496): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 13:51:23] Arguments: --nthreads 8
[2025-10-11 13:51:23] Threads: 8
[2025-10-11 13:51:23] Checking for CVMFS
[2025-10-11 13:51:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 13:51:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 13:51:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 13:51:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 13:51:24] 2.13.1.0 4140 3120 72508 151591 1 188 33956742 39288832 3664 16776704 0 10732931 99.997 105925 33257 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 13:51:24] CVMFS is ok
[2025-10-11 13:51:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 13:51:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 13:51:24] Further information can be found at the LHC@home message board.
[2025-10-11 13:51:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 13:51:24] Checking for apptainer binary...
[2025-10-11 13:51:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 13:51:24] Running /usr/bin/apptainer --version
[2025-10-11 13:51:24] apptainer version 1.4.3-1.el9
[2025-10-11 13:51:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 13:51:24] c-210-16.aglt2.org
[2025-10-11 13:51:24] apptainer works
[2025-10-11 13:51:24] Set ATHENA_PROC_NUMBER=8
[2025-10-11 13:51:24] Set ATHENA_CORE_NUMBER=8
[2025-10-11 13:51:24] Starting ATLAS job with PandaID=6838366539
[2025-10-11 13:51:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 15:32:50]  *** The last 200 lines of the pilot log: ***
[2025-10-11 15:32:50]  mtime=0
[2025-10-11 15:32:50]  protocol_id=None
[2025-10-11 15:32:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 15:32:50]  replicas=None
[2025-10-11 15:32:50]  scope=mc23_13p6TeV
[2025-10-11 15:32:50]  status=None
[2025-10-11 15:32:50]  status_code=0
[2025-10-11 15:32:50]  storage_token=
[2025-10-11 15:32:50]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6838366539/log.46676269._057422.job.log.tgz.1
[2025-10-11 15:32:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/d7/log.46676269._057422.job.log.tgz.1
[2025-10-11 15:32:50]  workdir=None
[2025-10-11 15:32:50] ]
[2025-10-11 15:32:50] 2025-10-11 19:31:38,648 | INFO     | transferring file log.46676269._057422.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6838366539/log.46676269._057422.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 15:32:50] 2025-10-11 19:31:38,648 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6838366539/log.46676269._057422.job.log.tgz.1 /tmp/boinchome/slots/2/log.46676269._057422.job
[2025-10-11 15:32:50] 2025-10-11 19:31:38,663 | INFO     | adding to output.list: log.46676269._057422.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/d7/log.46676269._057422.job.log.tg
[2025-10-11 15:32:50] 2025-10-11 19:31:38,664 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 15:32:50] 2025-10-11 19:31:38,664 | INFO     | summary of transferred files:
[2025-10-11 15:32:50] 2025-10-11 19:31:38,664 | INFO     |  -- lfn=log.46676269._057422.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 15:32:50] 2025-10-11 19:31:38,665 | INFO     | stage-out finished correctly
[2025-10-11 15:32:50] 2025-10-11 19:31:39,254 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 15:32:50] 2025-10-11 19:31:40,333 | INFO     | time since job start (6005s) is within the limit (172800.0s)
[2025-10-11 15:32:50] 2025-10-11 19:31:41,022 | INFO     | monitor loop #447: job 0:6838366539 is in state 'finished'
[2025-10-11 15:32:50] 2025-10-11 19:31:41,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:32:50] 2025-10-11 19:31:41,877 | INFO     | job 6838366539 has state=finished
[2025-10-11 15:32:50] 2025-10-11 19:31:41,877 | INFO     | preparing for final server update for job 6838366539 in state='finished'
[2025-10-11 15:32:50] 2025-10-11 19:31:41,878 | INFO     | this job has now completed (state=finished)
[2025-10-11 15:32:50] 2025-10-11 19:31:41,878 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 15:32:50] 2025-10-11 19:31:41,878 | INFO     | log transfer has been attempted: DONE
[2025-10-11 15:32:50] 2025-10-11 19:31:41,878 | INFO     | job 6838366539 has finished - writing final server update
[2025-10-11 15:32:50] 2025-10-11 19:31:41,879 | INFO     | total number of processed events: 400 (read)
[2025-10-11 15:32:50] 2025-10-11 19:31:41,879 | INFO     | executing command: lscpu
[2025-10-11 15:32:50] 2025-10-11 19:31:41,917 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 15:32:50] 2025-10-11 19:31:42,341 | INFO     | time since job start (6007s) is within the limit (172800.0s)
[2025-10-11 15:32:50] 2025-10-11 19:31:43,525 | INFO     | monitor loop #448: job 0:6838366539 is in state 'finished'
[2025-10-11 15:32:50] 2025-10-11 19:31:43,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:32:50] 2025-10-11 19:31:44,346 | INFO     | time since job start (6009s) is within the limit (172800.0s)
[2025-10-11 15:32:50] 2025-10-11 19:31:45,413 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 15:32:50] 2025-10-11 19:31:45,419 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2620.0564999999997
[2025-10-11 15:32:50] 2025-10-11 19:31:45,426 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838366539/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 15:32:50] 2025-10-11 19:31:45,427 | INFO     | extracted standard info from prmon json
[2025-10-11 15:32:50] 2025-10-11 19:31:45,427 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 15:32:50] 2025-10-11 19:31:45,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 15:32:50] 2025-10-11 19:31:45,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 15:32:50] 2025-10-11 19:31:45,428 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 15:32:50] 2025-10-11 19:31:45,430 | INFO     | fitting pss+swap vs Time
[2025-10-11 15:32:50] 2025-10-11 19:31:45,430 | INFO     | sum of square deviations: 233641590.0
[2025-10-11 15:32:50] 2025-10-11 19:31:45,431 | INFO     | sum of deviations: -1051444434.0000001
[2025-10-11 15:32:50] 2025-10-11 19:31:45,431 | INFO     | mean x: 1760208169.0
[2025-10-11 15:32:50] 2025-10-11 19:31:45,431 | INFO     | mean y: 2520862.967032967
[2025-10-11 15:32:50] 2025-10-11 19:31:45,432 | INFO     | -- intersect: 7923889151.7908745
[2025-10-11 15:32:50] 2025-10-11 19:31:45,432 | INFO     | intersect: 7923889151.7908745
[2025-10-11 15:32:50] 2025-10-11 19:31:45,432 | INFO     | chi2: 0.020989855228694523
[2025-10-11 15:32:50] 2025-10-11 19:31:45,432 | INFO     | -- intersect: 7923889151.7908745
[2025-10-11 15:32:50] 2025-10-11 19:31:45,432 | INFO     | current memory leak: -4.50 B/s (using 91 data points, chi2=0.02)
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | could have reported an average CPU frequency of 2608 MHz (7 samples)
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | ..............................
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | . Timing measurements:
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | . get job = 0 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | . initial setup = 2 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | . payload setup = 5 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | . stage-in = 0 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,433 | INFO     | . payload execution = 5979 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,434 | INFO     | . stage-out = 0 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,434 | INFO     | . log creation = 0 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,434 | INFO     | ..............................
[2025-10-11 15:32:50] 2025-10-11 19:31:45,540 | INFO     | 
[2025-10-11 15:32:50] 2025-10-11 19:31:45,540 | INFO     | job summary report
[2025-10-11 15:32:50] 2025-10-11 19:31:45,540 | INFO     | --------------------------------------------------
[2025-10-11 15:32:50] 2025-10-11 19:31:45,540 | INFO     | PanDA job id: 6838366539
[2025-10-11 15:32:50] 2025-10-11 19:31:45,540 | INFO     | task id: 46676269
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | errors: (none)
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | pilot state: finished 
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | transexitcode: 0
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | exeerrorcode: 0
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | exeerrordiag: 
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | exitcode: 0
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | exitmsg: OK
[2025-10-11 15:32:50] 2025-10-11 19:31:45,541 | INFO     | cpuconsumptiontime: 44288 s
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | nevents: 400
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | neventsw: 0
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | pid: 2583814
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | pgrp: 2583814
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | corecount: 8
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | event service: False
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | sizes: {0: 2348635, 1: 2348834, 4: 2349096, 11: 2349124, 5987: 2375941, 5988: 2375940, 5989: 2385178, 5995: 2385316}
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | --------------------------------------------------
[2025-10-11 15:32:50] 2025-10-11 19:31:45,542 | INFO     | 
[2025-10-11 15:32:50] 2025-10-11 19:31:45,543 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 15:32:50] 2025-10-11 19:31:45,560 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,562 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,562 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,562 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,562 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,562 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 15:32:50] 2025-10-11 19:31:45,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 15:32:50] 2025-10-11 19:31:45,563 | INFO     | job 6838366539 has completed (purged errors)
[2025-10-11 15:32:50] 2025-10-11 19:31:45,563 | INFO     | overall cleanup function is called
[2025-10-11 15:32:50] 2025-10-11 19:31:46,571 | INFO     | --- collectZombieJob: --- 10, [2583814]
[2025-10-11 15:32:50] 2025-10-11 19:31:46,571 | INFO     | zombie collector waiting for pid 2583814
[2025-10-11 15:32:50] 2025-10-11 19:31:46,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 15:32:50] 2025-10-11 19:31:46,571 | INFO     | collected zombie processes
[2025-10-11 15:32:50] 2025-10-11 19:31:46,571 | INFO     | will attempt to kill all subprocesses of pid=2583814
[2025-10-11 15:32:50] 2025-10-11 19:31:46,697 | INFO     | process IDs to be killed: [2583814] (in reverse order)
[2025-10-11 15:32:50] 2025-10-11 19:31:46,755 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 15:32:50] 2025-10-11 19:31:46,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 15:32:50] 2025-10-11 19:31:46,761 | INFO     | did not find any defunct processes belonging to 2583814
[2025-10-11 15:32:50] 2025-10-11 19:31:46,764 | INFO     | did not find any defunct processes belonging to 2583814
[2025-10-11 15:32:50] 2025-10-11 19:31:46,764 | INFO     | ready for new job
[2025-10-11 15:32:50] 2025-10-11 19:31:46,764 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 15:32:50] 2025-10-11 19:31:46,766 | INFO     | ***************************************
[2025-10-11 15:32:50] 2025-10-11 19:31:46,766 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 15:32:50] 2025-10-11 19:31:46,766 | INFO     | ***************************************
[2025-10-11 15:32:50] 2025-10-11 19:31:46,766 | INFO     | 
[2025-10-11 15:32:50] 2025-10-11 19:31:46,767 | INFO     | architecture information:
[2025-10-11 15:32:50] 2025-10-11 19:31:46,767 | INFO     | executing command: cat /etc/os-release
[2025-10-11 15:32:50] 2025-10-11 19:31:46,778 | INFO     | cat /etc/os-release:
[2025-10-11 15:32:50] NAME="CentOS Linux"
[2025-10-11 15:32:50] VERSION="7 (Core)"
[2025-10-11 15:32:50] ID="centos"
[2025-10-11 15:32:50] ID_LIKE="rhel fedora"
[2025-10-11 15:32:50] VERSION_ID="7"
[2025-10-11 15:32:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 15:32:50] ANSI_COLOR="0;31"
[2025-10-11 15:32:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 15:32:50] HOME_URL="https://www.centos.org/"
[2025-10-11 15:32:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 15:32:50] 
[2025-10-11 15:32:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 15:32:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 15:32:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 15:32:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 15:32:50] 
[2025-10-11 15:32:50] 2025-10-11 19:31:46,778 | INFO     | ***************************************
[2025-10-11 15:32:50] 2025-10-11 19:31:47,281 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 15:32:50] 2025-10-11 19:31:47,296 | INFO     | sufficient remaining disk space (51622445056 B)
[2025-10-11 15:32:50] 2025-10-11 19:31:47,297 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 15:32:50] 2025-10-11 19:31:47,297 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 15:32:50] 2025-10-11 19:31:47,297 | INFO     | update_server=False
[2025-10-11 15:32:50] 2025-10-11 19:31:47,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 15:32:50] 2025-10-11 19:31:47,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:32:50] 2025-10-11 19:31:47,298 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 15:32:50] 2025-10-11 19:31:47,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:32:50] 2025-10-11 19:31:47,298 | INFO     | aborting loop
[2025-10-11 15:32:50] 2025-10-11 19:31:47,665 | INFO     | all data control threads have been joined
[2025-10-11 15:32:50] 2025-10-11 19:31:48,047 | INFO     | all payload control threads have been joined
[2025-10-11 15:32:50] 2025-10-11 19:31:48,067 | INFO     | all job control threads have been joined
[2025-10-11 15:32:50] 2025-10-11 19:31:48,300 | INFO     | [job] job monitor thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:48,303 | INFO     | [job] retrieve thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:48,303 | INFO     | [job] queue monitor thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:48,454 | INFO     | [payload] validate_post thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:48,619 | INFO     | [payload] failed_post thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:48,671 | INFO     | [data] control thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,053 | INFO     | [payload] control thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,073 | INFO     | [job] control thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,243 | INFO     | [data] copytool_in thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,249 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,303 | INFO     | [data] copytool_out thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,411 | INFO     | [job] validate thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,611 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,692 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,781 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:31:49,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 15:32:50] 2025-10-11 19:31:53,871 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 15:32:50] 2025-10-11 19:32:17,677 | INFO     | PID=2577409 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 15:32:50] 2025-10-11 19:32:17,677 | INFO     | .. there are 5 such processes running
[2025-10-11 15:32:50] 2025-10-11 19:32:17,678 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 15:32:50] 2025-10-11 19:32:17,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 15:32:50] 2025-10-11 19:32:17,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 15:32:50] 2025-10-11 19:32:44,385 | INFO     | [monitor] cgroup control has ended
[2025-10-11 15:32:50] 2025-10-11 19:32:44,899 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140143700043584)>', '<ExcThread(monitor, started 140142660527872)>']
[2025-10-11 15:32:50] 2025-10-11 19:32:45,796 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 15:32:50] 2025-10-11 19:32:45,796 | INFO     | [monitor] control thread has ended
[2025-10-11 15:32:50] 2025-10-11 19:32:49,917 | INFO     | all workflow threads have been joined
[2025-10-11 15:32:50] 2025-10-11 19:32:49,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 15:32:50] 2025-10-11 19:32:49,917 | INFO     | traces error code: 0
[2025-10-11 15:32:50] 2025-10-11 19:32:49,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 15:32:50] 2025-10-11 19:32:50,025 [wrapper] ==== pilot stdout END ====
[2025-10-11 15:32:50] 2025-10-11 19:32:50,028 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 15:32:50] 2025-10-11 19:32:50,030 [wrapper] pilotpid: 2577409
[2025-10-11 15:32:50] 2025-10-11 19:32:50,032 [wrapper] Pilot exit status: 0
[2025-10-11 15:32:50] 2025-10-11 19:32:50,041 [wrapper] pandaids: 6838366539
[2025-10-11 15:32:50] 2025-10-11 19:32:50,080 [wrapper] cleanup supervisor_pilot 2783015 2577410
[2025-10-11 15:32:50] 2025-10-11 19:32:50,083 [wrapper] Test setup, not cleaning
[2025-10-11 15:32:50] 2025-10-11 19:32:50,085 [wrapper] apfmon messages muted
[2025-10-11 15:32:50] 2025-10-11 19:32:50,087 [wrapper] ==== wrapper stdout END ====
[2025-10-11 15:32:50] 2025-10-11 19:32:50,090 [wrapper] ==== wrapper stderr END ====
[2025-10-11 15:32:50]  *** Error codes and diagnostics ***
[2025-10-11 15:32:50]     "exeErrorCode": 0,
[2025-10-11 15:32:50]     "exeErrorDiag": "",
[2025-10-11 15:32:50]     "pilotErrorCode": 0,
[2025-10-11 15:32:50]     "pilotErrorDiag": "",
[2025-10-11 15:32:50]  *** Listing of results directory ***
[2025-10-11 15:32:50] total 410108
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 08:02 pilot3.tar.gz
[2025-10-11 15:32:50] -rwx------. 1 boincer umatlas     36292 Oct 11 08:23 runpilot2-wrapper.sh
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 08:23 queuedata.json
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas       100 Oct 11 13:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 15:32:50] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 13:51 run_atlas
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas       105 Oct 11 13:51 job.xml
[2025-10-11 15:32:50] -rw-r--r--. 2 boincer umatlas 220738436 Oct 11 13:51 EVNT.46676267._002305.pool.root.1
[2025-10-11 15:32:50] -rw-r--r--. 2 boincer umatlas    569674 Oct 11 13:51 input.tar.gz
[2025-10-11 15:32:50] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:51 start_atlas.sh
[2025-10-11 15:32:50] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 13:51 shared
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas         0 Oct 11 13:51 boinc_lockfile
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 13:51 pandaJob.out
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas    975520 Oct 11 13:51 agis_schedconf.cvmfs.json
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas   1560580 Oct 11 13:51 agis_ddmendpoints.agis.ALL.json
[2025-10-11 15:32:50] drwx------. 5 boincer umatlas      4096 Oct 11 13:51 pilot3
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas 192851834 Oct 11 15:31 HITS.46676269._057422.pool.root.1
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas       529 Oct 11 15:31 boinc_task_state.xml
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas      1035 Oct 11 15:31 memory_monitor_summary.json
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas    349240 Oct 11 15:31 log.46676269._057422.job.log.tgz.1
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas      7813 Oct 11 15:31 heartbeat.json
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas      6659 Oct 11 15:31 init_data.xml
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas        95 Oct 11 15:32 pilot_heartbeat.json
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 15:32 boinc_mmap_file
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas        27 Oct 11 15:32 wrapper_checkpoint.txt
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas      4823 Oct 11 15:32 pilotlog.txt
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas    876615 Oct 11 15:32 log.46676269._057422.job.log.1
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas       357 Oct 11 15:32 output.list
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas       620 Oct 11 15:32 runtime_log
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas   1249280 Oct 11 15:32 result.tar.gz
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas       652 Oct 11 15:32 jSTKDm0nnR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiOgNDmpNDT6m.diag
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas      8703 Oct 11 15:32 runtime_log.err
[2025-10-11 15:32:50] -rw-r--r--. 1 boincer umatlas     21707 Oct 11 15:32 stderr.txt
[2025-10-11 15:32:50] HITS file was successfully produced:
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas 192851834 Oct 11 15:31 shared/HITS.pool.root.1
[2025-10-11 15:32:50]  *** Contents of shared directory: ***
[2025-10-11 15:32:50] total 405700
[2025-10-11 15:32:50] -rw-r--r--. 2 boincer umatlas 220738436 Oct 11 13:51 ATLAS.root_0
[2025-10-11 15:32:50] -rw-r--r--. 2 boincer umatlas    569674 Oct 11 13:51 input.tar.gz
[2025-10-11 15:32:50] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:51 start_atlas.sh
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas 192851834 Oct 11 15:31 HITS.pool.root.1
[2025-10-11 15:32:50] -rw-------. 1 boincer umatlas   1249280 Oct 11 15:32 result.tar.gz
15:32:51 (2573496): run_atlas exited; CPU time 44408.649580
15:32:51 (2573496): called boinc_finish(0)

</stderr_txt>
]]>

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