Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:29:08 (346292): wrapper (7.7.26015): starting
13:29:08 (346292): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 13:29:08] Arguments: --nthreads 8
[2025-10-11 13:29:08] Threads: 8
[2025-10-11 13:29:08] Checking for CVMFS
[2025-10-11 13:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 13:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 13:29:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 13:29:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 13:29:11] 2.13.2.0 2533812 128103 300176 151591 2 187 31772283 32935936 44863 16776704 0 365618348 99.694 277359937 19922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 13:29:11] CVMFS is ok
[2025-10-11 13:29:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 13:29:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 13:29:11] Further information can be found at the LHC@home message board.
[2025-10-11 13:29:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 13:29:11] Checking for apptainer binary...
[2025-10-11 13:29:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 13:29:11] Running /usr/bin/apptainer --version
[2025-10-11 13:29:11] apptainer version 1.4.3-1.el9
[2025-10-11 13:29:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 13:29:12] c6-12-29-3.aglt2.org
[2025-10-11 13:29:12] apptainer works
[2025-10-11 13:29:12] Set ATHENA_PROC_NUMBER=8
[2025-10-11 13:29:12] Set ATHENA_CORE_NUMBER=8
[2025-10-11 13:29:12] Starting ATLAS job with PandaID=6837875699
[2025-10-11 13:29:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 19:15:33]  *** The last 200 lines of the pilot log: ***
[2025-10-11 19:15:33] 2025-10-11 23:14:37,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 19:15:33] 2025-10-11 23:14:37,556 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 19:15:33] 2025-10-11 23:14:37,575 | INFO     | fitting pss+swap vs Time
[2025-10-11 19:15:33] 2025-10-11 23:14:37,576 | INFO     | sum of square deviations: 11657295834.608986
[2025-10-11 19:15:33] 2025-10-11 23:14:37,582 | INFO     | sum of deviations: 84990825919.2089
[2025-10-11 19:15:33] 2025-10-11 23:14:37,582 | INFO     | mean x: 1760214199.3761194
[2025-10-11 19:15:33] 2025-10-11 23:14:37,583 | INFO     | mean y: 2088647.776119403
[2025-10-11 19:15:33] 2025-10-11 23:14:37,583 | INFO     | -- intersect: -12831252868.319447
[2025-10-11 19:15:33] 2025-10-11 23:14:37,583 | INFO     | intersect: -12831252868.319447
[2025-10-11 19:15:33] 2025-10-11 23:14:37,587 | INFO     | chi2: 5.1621877432706444
[2025-10-11 19:15:33] 2025-10-11 23:14:37,588 | INFO     | sum of square deviations: 11143101366.390837
[2025-10-11 19:15:33] 2025-10-11 23:14:37,595 | INFO     | sum of deviations: 123350259279.91829
[2025-10-11 19:15:33] 2025-10-11 23:14:37,596 | INFO     | mean x: 1760214046.8818183
[2025-10-11 19:15:33] 2025-10-11 23:14:37,596 | INFO     | mean y: 2099919.536363636
[2025-10-11 19:15:33] 2025-10-11 23:14:37,596 | INFO     | -- intersect: -19482857807.394096
[2025-10-11 19:15:33] 2025-10-11 23:14:37,596 | INFO     | intersect: -19482857807.394096
[2025-10-11 19:15:33] 2025-10-11 23:14:37,597 | INFO     | chi2: 3.517048520156938
[2025-10-11 19:15:33] 2025-10-11 23:14:37,597 | INFO     | current chi2=3.517048520156938 (change=31.869031211782 %)
[2025-10-11 19:15:33] 2025-10-11 23:14:37,597 | INFO     | sum of square deviations: 10644256023.150713
[2025-10-11 19:15:33] 2025-10-11 23:14:37,604 | INFO     | sum of deviations: 119949509806.13536
[2025-10-11 19:15:33] 2025-10-11 23:14:37,605 | INFO     | mean x: 1760213894.3876922
[2025-10-11 19:15:33] 2025-10-11 23:14:37,605 | INFO     | mean y: 2098877.633846154
[2025-10-11 19:15:33] 2025-10-11 23:14:37,605 | INFO     | -- intersect: -19833650405.974182
[2025-10-11 19:15:33] 2025-10-11 23:14:37,605 | INFO     | intersect: -19833650405.974182
[2025-10-11 19:15:33] 2025-10-11 23:14:37,605 | INFO     | chi2: 3.518498720903006
[2025-10-11 19:15:33] 2025-10-11 23:14:37,606 | INFO     | current chi2=3.518498720903006 (change=-0.041233458616124846 %)
[2025-10-11 19:15:33] 2025-10-11 23:14:37,606 | INFO     | right removable region: 324
[2025-10-11 19:15:33] 2025-10-11 23:14:37,606 | INFO     | sum of square deviations: 11143044697.151503
[2025-10-11 19:15:33] 2025-10-11 23:14:37,613 | INFO     | sum of deviations: 10864131704.484848
[2025-10-11 19:15:33] 2025-10-11 23:14:37,613 | INFO     | mean x: 1760214351.878788
[2025-10-11 19:15:33] 2025-10-11 23:14:37,614 | INFO     | mean y: 2110579.912121212
[2025-10-11 19:15:33] 2025-10-11 23:14:37,614 | INFO     | -- intersect: -1714045198.5730941
[2025-10-11 19:15:33] 2025-10-11 23:14:37,614 | INFO     | intersect: -1714045198.5730941
[2025-10-11 19:15:33] 2025-10-11 23:14:37,614 | INFO     | chi2: 2.5023495702367082
[2025-10-11 19:15:33] 2025-10-11 23:14:37,615 | INFO     | current chi2=2.5023495702367082 (change=51.52540560930322 %)
[2025-10-11 19:15:33] 2025-10-11 23:14:37,619 | INFO     | sum of square deviations: 10644122798.923117
[2025-10-11 19:15:33] 2025-10-11 23:14:37,622 | INFO     | sum of deviations: -18278369937.384617
[2025-10-11 19:15:33] 2025-10-11 23:14:37,623 | INFO     | mean x: 1760214504.3846154
[2025-10-11 19:15:33] 2025-10-11 23:14:37,623 | INFO     | mean y: 2119482.523076923
[2025-10-11 19:15:33] 2025-10-11 23:14:37,623 | INFO     | -- intersect: 3024806507.8500676
[2025-10-11 19:15:33] 2025-10-11 23:14:37,627 | INFO     | intersect: 3024806507.8500676
[2025-10-11 19:15:33] 2025-10-11 23:14:37,628 | INFO     | chi2: 2.1267673827209332
[2025-10-11 19:15:33] 2025-10-11 23:14:37,628 | INFO     | current chi2=2.1267673827209332 (change=15.009181450225878 %)
[2025-10-11 19:15:33] 2025-10-11 23:14:37,628 | INFO     | left removable region: 20
[2025-10-11 19:15:33] 2025-10-11 23:14:37,628 | INFO     | sum of square deviations: 8711278502.631645
[2025-10-11 19:15:33] 2025-10-11 23:14:37,631 | INFO     | sum of deviations: 25636889584.63158
[2025-10-11 19:15:33] 2025-10-11 23:14:37,635 | INFO     | mean x: 1760214473.8947368
[2025-10-11 19:15:33] 2025-10-11 23:14:37,635 | INFO     | mean y: 2128252.0197368423
[2025-10-11 19:15:33] 2025-10-11 23:14:37,635 | INFO     | -- intersect: -5178101504.023213
[2025-10-11 19:15:33] 2025-10-11 23:14:37,636 | INFO     | intersect: -5178101504.023213
[2025-10-11 19:15:33] 2025-10-11 23:14:37,636 | INFO     | chi2: 0.30545174228128824
[2025-10-11 19:15:33] 2025-10-11 23:14:37,636 | INFO     | -- intersect: -5178101504.023213
[2025-10-11 19:15:33] 2025-10-11 23:14:37,636 | INFO     | current memory leak: 2.94 B/s (using 304 data points, chi2=0.31)
[2025-10-11 19:15:33] 2025-10-11 23:14:37,637 | INFO     | could have reported an average CPU frequency of 2602 MHz (15 samples)
[2025-10-11 19:15:33] 2025-10-11 23:14:37,637 | INFO     | ..............................
[2025-10-11 19:15:33] 2025-10-11 23:14:37,637 | INFO     | . Timing measurements:
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | . get job = 0 s
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | . initial setup = 9 s
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | . payload setup = 45 s
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | . stage-in = 0 s
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | . payload execution = 20444 s
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | . stage-out = 8 s
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | . log creation = 0 s
[2025-10-11 19:15:33] 2025-10-11 23:14:37,638 | INFO     | ..............................
[2025-10-11 19:15:33] 2025-10-11 23:14:38,057 | INFO     | 
[2025-10-11 19:15:33] 2025-10-11 23:14:38,058 | INFO     | job summary report
[2025-10-11 19:15:33] 2025-10-11 23:14:38,058 | INFO     | --------------------------------------------------
[2025-10-11 19:15:33] 2025-10-11 23:14:38,058 | INFO     | PanDA job id: 6837875699
[2025-10-11 19:15:33] 2025-10-11 23:14:38,061 | INFO     | task id: 46676269
[2025-10-11 19:15:33] 2025-10-11 23:14:38,061 | INFO     | errors: (none)
[2025-10-11 19:15:33] 2025-10-11 23:14:38,061 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 19:15:33] 2025-10-11 23:14:38,061 | INFO     | pilot state: finished 
[2025-10-11 19:15:33] 2025-10-11 23:14:38,061 | INFO     | transexitcode: 0
[2025-10-11 19:15:33] 2025-10-11 23:14:38,061 | INFO     | exeerrorcode: 0
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | exeerrordiag: 
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | exitcode: 0
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | exitmsg: OK
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | cpuconsumptiontime: 45878 s
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | nevents: 400
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | neventsw: 0
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | pid: 373466
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | pgrp: 373466
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | corecount: 8
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | event service: False
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | sizes: {0: 2348686, 1: 2348686, 3: 2348913, 14: 2348913, 26: 2348941, 37: 2349387, 50: 2349387, 20495: 2382557, 20496: 2382556, 20504: 2391610, 20509: 2391666, 205
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | --------------------------------------------------
[2025-10-11 19:15:33] 2025-10-11 23:14:38,062 | INFO     | 
[2025-10-11 19:15:33] 2025-10-11 23:14:38,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 19:15:33] 2025-10-11 23:14:38,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,291 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 19:15:33] 2025-10-11 23:14:38,291 | INFO     | job 6837875699 has completed (purged errors)
[2025-10-11 19:15:33] 2025-10-11 23:14:38,291 | INFO     | overall cleanup function is called
[2025-10-11 19:15:33] 2025-10-11 23:14:39,304 | INFO     | --- collectZombieJob: --- 10, [373466]
[2025-10-11 19:15:33] 2025-10-11 23:14:39,304 | INFO     | zombie collector waiting for pid 373466
[2025-10-11 19:15:33] 2025-10-11 23:14:39,304 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 19:15:33] 2025-10-11 23:14:39,305 | INFO     | collected zombie processes
[2025-10-11 19:15:33] 2025-10-11 23:14:39,305 | INFO     | will attempt to kill all subprocesses of pid=373466
[2025-10-11 19:15:33] 2025-10-11 23:14:42,217 | INFO     | process IDs to be killed: [373466] (in reverse order)
[2025-10-11 19:15:33] 2025-10-11 23:14:43,121 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 19:15:33] 2025-10-11 23:14:43,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 19:15:33] 2025-10-11 23:14:43,165 | INFO     | did not find any defunct processes belonging to 373466
[2025-10-11 19:15:33] 2025-10-11 23:14:43,210 | INFO     | did not find any defunct processes belonging to 373466
[2025-10-11 19:15:33] 2025-10-11 23:14:43,210 | INFO     | ready for new job
[2025-10-11 19:15:33] 2025-10-11 23:14:43,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 19:15:33] 2025-10-11 23:14:43,219 | INFO     | ***************************************
[2025-10-11 19:15:33] 2025-10-11 23:14:43,219 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 19:15:33] 2025-10-11 23:14:43,219 | INFO     | ***************************************
[2025-10-11 19:15:33] 2025-10-11 23:14:43,219 | INFO     | 
[2025-10-11 19:15:33] 2025-10-11 23:14:43,229 | INFO     | architecture information:
[2025-10-11 19:15:33] 2025-10-11 23:14:43,234 | INFO     | executing command: cat /etc/os-release
[2025-10-11 19:15:33] 2025-10-11 23:14:43,316 | INFO     | cat /etc/os-release:
[2025-10-11 19:15:33] NAME="CentOS Linux"
[2025-10-11 19:15:33] VERSION="7 (Core)"
[2025-10-11 19:15:33] ID="centos"
[2025-10-11 19:15:33] ID_LIKE="rhel fedora"
[2025-10-11 19:15:33] VERSION_ID="7"
[2025-10-11 19:15:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 19:15:33] ANSI_COLOR="0;31"
[2025-10-11 19:15:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 19:15:33] HOME_URL="https://www.centos.org/"
[2025-10-11 19:15:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 19:15:33] 
[2025-10-11 19:15:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 19:15:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 19:15:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 19:15:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 19:15:33] 
[2025-10-11 19:15:33] 2025-10-11 23:14:43,317 | INFO     | ***************************************
[2025-10-11 19:15:33] 2025-10-11 23:14:43,820 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 19:15:33] 2025-10-11 23:14:43,934 | INFO     | sufficient remaining disk space (94160027648 B)
[2025-10-11 19:15:33] 2025-10-11 23:14:43,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 19:15:33] 2025-10-11 23:14:43,934 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 19:15:33] 2025-10-11 23:14:43,934 | INFO     | update_server=False
[2025-10-11 19:15:33] 2025-10-11 23:14:43,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 19:15:33] 2025-10-11 23:14:43,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 19:15:33] 2025-10-11 23:14:43,938 | INFO     | aborting loop
[2025-10-11 19:15:33] 2025-10-11 23:14:43,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 19:15:33] 2025-10-11 23:14:43,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 19:15:33] 2025-10-11 23:14:44,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 19:15:33] 2025-10-11 23:14:44,543 | INFO     | all payload control threads have been joined
[2025-10-11 19:15:33] 2025-10-11 23:14:44,748 | INFO     | all data control threads have been joined
[2025-10-11 19:15:33] 2025-10-11 23:14:44,940 | INFO     | [job] retrieve thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:44,948 | INFO     | [job] queue monitor thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:44,959 | INFO     | [job] job monitor thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,192 | INFO     | all job control threads have been joined
[2025-10-11 19:15:33] 2025-10-11 23:14:45,205 | INFO     | [payload] failed_post thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,524 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,569 | INFO     | [payload] control thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,747 | INFO     | [payload] validate_post thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,754 | INFO     | [data] control thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,904 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,922 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:45,965 | INFO     | [data] copytool_out thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:46,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:46,166 | INFO     | [data] copytool_in thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:46,198 | INFO     | [job] control thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:46,227 | INFO     | [job] validate thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:14:48,405 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 19:15:33] 2025-10-11 23:15:13,734 | INFO     | PID=356755 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 19:15:33] 2025-10-11 23:15:13,735 | INFO     | .. there are 58 such processes running
[2025-10-11 19:15:33] 2025-10-11 23:15:13,735 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 19:15:33] 2025-10-11 23:15:13,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 19:15:33] 2025-10-11 23:15:13,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 19:15:33] 2025-10-11 23:15:24,465 | INFO     | [monitor] cgroup control has ended
[2025-10-11 19:15:33] 2025-10-11 23:15:25,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077382375232)>', '<ExcThread(monitor, started 140076432471808)>']
[2025-10-11 19:15:33] 2025-10-11 23:15:25,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 19:15:33] 2025-10-11 23:15:25,872 | INFO     | [monitor] control thread has ended
[2025-10-11 19:15:33] 2025-10-11 23:15:27,461 [wrapper] supervise_pilot (15 min periods counter: 24)
[2025-10-11 19:15:33] 2025-10-11 23:15:30,421 | INFO     | all workflow threads have been joined
[2025-10-11 19:15:33] 2025-10-11 23:15:30,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 19:15:33] 2025-10-11 23:15:30,422 | INFO     | traces error code: 0
[2025-10-11 19:15:33] 2025-10-11 23:15:30,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 19:15:33] 2025-10-11 23:15:31,862 [wrapper] ==== pilot stdout END ====
[2025-10-11 19:15:33] 2025-10-11 23:15:31,906 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 19:15:33] 2025-10-11 23:15:31,922 [wrapper] pilotpid: 356755
[2025-10-11 19:15:33] 2025-10-11 23:15:31,945 [wrapper] Pilot exit status: 0
[2025-10-11 19:15:33] 2025-10-11 23:15:32,037 [wrapper] pandaids: 6837875699
[2025-10-11 19:15:33] 2025-10-11 23:15:32,296 [wrapper] cleanup supervisor_pilot 1983555 356756
[2025-10-11 19:15:33] 2025-10-11 23:15:32,321 [wrapper] Test setup, not cleaning
[2025-10-11 19:15:33] 2025-10-11 23:15:32,336 [wrapper] apfmon messages muted
[2025-10-11 19:15:33] 2025-10-11 23:15:32,386 [wrapper] ==== wrapper stdout END ====
[2025-10-11 19:15:33] 2025-10-11 23:15:32,397 [wrapper] ==== wrapper stderr END ====
[2025-10-11 19:15:33]  *** Error codes and diagnostics ***
[2025-10-11 19:15:33]     "exeErrorCode": 0,
[2025-10-11 19:15:33]     "exeErrorDiag": "",
[2025-10-11 19:15:33]     "pilotErrorCode": 0,
[2025-10-11 19:15:33]     "pilotErrorDiag": "",
[2025-10-11 19:15:33]  *** Listing of results directory ***
[2025-10-11 19:15:33] total 407980
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 20:15 pilot3.tar.gz
[2025-10-11 19:15:33] -rwx------. 1 boincer umatlas     36292 Oct 10 20:20 runpilot2-wrapper.sh
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 20:20 queuedata.json
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas       100 Oct 11 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 19:15:33] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 13:29 run_atlas
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas       105 Oct 11 13:29 job.xml
[2025-10-11 19:15:33] -rw-r--r--. 2 boincer umatlas 219007916 Oct 11 13:29 EVNT.46676267._001924.pool.root.1
[2025-10-11 19:15:33] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:29 start_atlas.sh
[2025-10-11 19:15:33] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 13:29 shared
[2025-10-11 19:15:33] -rw-r--r--. 2 boincer umatlas    569674 Oct 11 13:29 input.tar.gz
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas         0 Oct 11 13:29 boinc_lockfile
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 13:29 pandaJob.out
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas    975520 Oct 11 13:30 agis_schedconf.cvmfs.json
[2025-10-11 19:15:33] drwx------. 5 boincer umatlas      4096 Oct 11 13:30 pilot3
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas      6860 Oct 11 19:10 init_data.xml
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas 189189103 Oct 11 19:11 HITS.46676269._047653.pool.root.1
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas       531 Oct 11 19:12 boinc_task_state.xml
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas      1044 Oct 11 19:13 memory_monitor_summary.json
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas   1560580 Oct 11 19:13 agis_ddmendpoints.agis.ALL.json
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas    527136 Oct 11 19:13 log.46676269._047653.job.log.tgz.1
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas        95 Oct 11 19:14 pilot_heartbeat.json
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas      7833 Oct 11 19:14 heartbeat.json
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 19:15 boinc_mmap_file
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas        28 Oct 11 19:15 wrapper_checkpoint.txt
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas      4823 Oct 11 19:15 pilotlog.txt
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas   2306406 Oct 11 19:15 log.46676269._047653.job.log.1
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas       357 Oct 11 19:15 output.list
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas       620 Oct 11 19:15 runtime_log
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas   2856960 Oct 11 19:15 result.tar.gz
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas      8714 Oct 11 19:15 runtime_log.err
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas       657 Oct 11 19:15 O4bLDmhWcR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2pQMDmZcSbNm.diag
[2025-10-11 19:15:33] -rw-r--r--. 1 boincer umatlas     21032 Oct 11 19:15 stderr.txt
[2025-10-11 19:15:33] HITS file was successfully produced:
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas 189189103 Oct 11 19:11 shared/HITS.pool.root.1
[2025-10-11 19:15:33]  *** Contents of shared directory: ***
[2025-10-11 19:15:33] total 402004
[2025-10-11 19:15:33] -rw-r--r--. 2 boincer umatlas 219007916 Oct 11 13:29 ATLAS.root_0
[2025-10-11 19:15:33] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:29 start_atlas.sh
[2025-10-11 19:15:33] -rw-r--r--. 2 boincer umatlas    569674 Oct 11 13:29 input.tar.gz
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas 189189103 Oct 11 19:11 HITS.pool.root.1
[2025-10-11 19:15:33] -rw-------. 1 boincer umatlas   2856960 Oct 11 19:15 result.tar.gz
19:15:34 (346292): run_atlas exited; CPU time 47035.362022
19:15:34 (346292): called boinc_finish(0)

</stderr_txt>
]]>

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