Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:02:49 (3551153): wrapper (7.7.26015): starting
13:02:49 (3551153): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 13:02:49] Arguments: --nthreads 12
[2025-10-13 13:02:49] Threads: 12
[2025-10-13 13:02:49] Checking for CVMFS
[2025-10-13 13:02:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:02:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:02:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:02:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:02:50] 2.13.2.0 13441 14316 60028 151643 2 57 5808201 6144000 0 130560 0 12631442 99.992 440437 61 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 13:02:50] CVMFS is ok
[2025-10-13 13:02:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:02:50] Checking for apptainer binary...
[2025-10-13 13:02:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:02:51] Running /usr/bin/apptainer --version
[2025-10-13 13:02:51] apptainer version 1.4.3
[2025-10-13 13:02:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:02:51] MINIPC-PN51-E1
[2025-10-13 13:02:51] apptainer works
[2025-10-13 13:02:51] Set ATHENA_PROC_NUMBER=12
[2025-10-13 13:02:51] Set ATHENA_CORE_NUMBER=12
[2025-10-13 13:02:51] Starting ATLAS job with PandaID=6838366435
[2025-10-13 13:02:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:17:16]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:17:16] 2025-10-13 03:16:01,189 | INFO     | transferring file log.46676269._057318.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6838366435/log.46676269._057318.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 14:17:16] 2025-10-13 03:16:01,189 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6838366435/log.46676269._057318.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._057318.job
[2025-10-13 14:17:16] 2025-10-13 03:16:01,205 | INFO     | adding to output.list: log.46676269._057318.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/9c/log.46676269._057318.job.log.tg
[2025-10-13 14:17:16] 2025-10-13 03:16:01,206 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 14:17:16] 2025-10-13 03:16:01,206 | INFO     | summary of transferred files:
[2025-10-13 14:17:16] 2025-10-13 03:16:01,206 | INFO     |  -- lfn=log.46676269._057318.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 14:17:16] 2025-10-13 03:16:01,206 | INFO     | stage-out finished correctly
[2025-10-13 14:17:16] 2025-10-13 03:16:01,475 | WARNING  | process 3561865 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 14:17:16] 2025-10-13 03:16:01,475 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6838366435/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 14:17:16] 2025-10-13 03:16:01,534 | INFO     | number of running child processes to parent process 3561865: 1
[2025-10-13 14:17:16] 2025-10-13 03:16:01,534 | INFO     | maximum number of monitored processes: 6
[2025-10-13 14:17:16] 2025-10-13 03:16:02,621 | INFO     | time since job start (4378s) is within the limit (172800.0s)
[2025-10-13 14:17:16] 2025-10-13 03:16:03,932 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 14:17:16] 2025-10-13 03:16:04,037 | INFO     | monitor loop #327: job 0:6838366435 is in state 'finished'
[2025-10-13 14:17:16] 2025-10-13 03:16:04,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:17:16] 2025-10-13 03:16:04,627 | INFO     | time since job start (4380s) is within the limit (172800.0s)
[2025-10-13 14:17:16] 2025-10-13 03:16:05,190 | INFO     | job 6838366435 has state=finished
[2025-10-13 14:17:16] 2025-10-13 03:16:05,191 | INFO     | preparing for final server update for job 6838366435 in state='finished'
[2025-10-13 14:17:16] 2025-10-13 03:16:05,191 | INFO     | this job has now completed (state=finished)
[2025-10-13 14:17:16] 2025-10-13 03:16:05,191 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 14:17:16] 2025-10-13 03:16:05,192 | INFO     | log transfer has been attempted: DONE
[2025-10-13 14:17:16] 2025-10-13 03:16:05,192 | INFO     | job 6838366435 has finished - writing final server update
[2025-10-13 14:17:16] 2025-10-13 03:16:05,192 | INFO     | total number of processed events: 400 (read)
[2025-10-13 14:17:16] 2025-10-13 03:16:05,194 | INFO     | executing command: lscpu
[2025-10-13 14:17:16] 2025-10-13 03:16:05,222 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 14:17:16] 2025-10-13 03:16:06,540 | INFO     | monitor loop #328: job 0:6838366435 is in state 'finished'
[2025-10-13 14:17:16] 2025-10-13 03:16:06,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:17:16] 2025-10-13 03:16:06,632 | INFO     | time since job start (4382s) is within the limit (172800.0s)
[2025-10-13 14:17:16] 2025-10-13 03:16:07,773 | INFO     | PID=3555002 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 14:17:16] 2025-10-13 03:16:08,774 | INFO     | time since job start (4384s) is within the limit (172800.0s)
[2025-10-13 14:17:16] 2025-10-13 03:16:09,043 | INFO     | monitor loop #329: job 0:6838366435 is in state 'finished'
[2025-10-13 14:17:16] 2025-10-13 03:16:09,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:17:16] 2025-10-13 03:16:10,780 | INFO     | time since job start (4386s) is within the limit (172800.0s)
[2025-10-13 14:17:16] 2025-10-13 03:16:11,544 | INFO     | monitor loop #330: job 0:6838366435 is in state 'finished'
[2025-10-13 14:17:16] 2025-10-13 03:16:11,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:17:16] 2025-10-13 03:16:12,785 | INFO     | time since job start (4388s) is within the limit (172800.0s)
[2025-10-13 14:17:16] 2025-10-13 03:16:12,914 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 14:17:16] 2025-10-13 03:16:12,916 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3325.65375
[2025-10-13 14:17:16] 2025-10-13 03:16:12,919 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6838366435/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 14:17:16] 2025-10-13 03:16:12,920 | INFO     | extracted standard info from prmon json
[2025-10-13 14:17:16] 2025-10-13 03:16:12,920 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 14:17:16] 2025-10-13 03:16:12,920 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 14:17:16] 2025-10-13 03:16:12,921 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 14:17:16] 2025-10-13 03:16:12,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 14:17:16] 2025-10-13 03:16:12,922 | INFO     | fitting pss+swap vs Time
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | sum of square deviations: 85133674.98461549
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | sum of deviations: -4580108114.892307
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | mean x: 1760323265.0153847
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | mean y: 2772761.892307692
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | -- intersect: 94706435823.39711
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | intersect: 94706435823.39711
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | chi2: 0.10386916230281949
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | -- intersect: 94706435823.39711
[2025-10-13 14:17:16] 2025-10-13 03:16:12,923 | INFO     | current memory leak: -53.80 B/s (using 65 data points, chi2=0.10)
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | could have reported an average CPU frequency of 2700 MHz (6 samples)
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | ..............................
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . Timing measurements:
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . get job = 0 s
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . initial setup = 7 s
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . payload setup = 5 s
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . stage-in = 0 s
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . payload execution = 4353 s
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . stage-out = 0 s
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | . log creation = 0 s
[2025-10-13 14:17:16] 2025-10-13 03:16:12,924 | INFO     | ..............................
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | 
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | job summary report
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | --------------------------------------------------
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | PanDA job id: 6838366435
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | task id: 46676269
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | errors: (none)
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | pilot state: finished 
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | transexitcode: 0
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | exeerrorcode: 0
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | exeerrordiag: 
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | exitcode: 0
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | exitmsg: OK
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | cpuconsumptiontime: 47185 s
[2025-10-13 14:17:16] 2025-10-13 03:16:13,267 | INFO     | nevents: 400
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | neventsw: 0
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | pid: 3561865
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | pgrp: 3561865
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | corecount: 12
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | event service: False
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 4362: 2375337, 4363: 2384335, 4365: 2384391, 4374: 2384713}
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | --------------------------------------------------
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | 
[2025-10-13 14:17:16] 2025-10-13 03:16:13,268 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,290 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,290 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,290 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 14:17:16] 2025-10-13 03:16:13,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,290 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 14:17:16] 2025-10-13 03:16:13,290 | INFO     | job 6838366435 has completed (purged errors)
[2025-10-13 14:17:16] 2025-10-13 03:16:13,290 | INFO     | overall cleanup function is called
[2025-10-13 14:17:16] 2025-10-13 03:16:14,303 | INFO     | --- collectZombieJob: --- 10, [3561865]
[2025-10-13 14:17:16] 2025-10-13 03:16:14,303 | INFO     | zombie collector waiting for pid 3561865
[2025-10-13 14:17:16] 2025-10-13 03:16:14,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 14:17:16] 2025-10-13 03:16:14,303 | INFO     | collected zombie processes
[2025-10-13 14:17:16] 2025-10-13 03:16:14,303 | INFO     | will attempt to kill all subprocesses of pid=3561865
[2025-10-13 14:17:16] 2025-10-13 03:16:14,384 | INFO     | process IDs to be killed: [3561865] (in reverse order)
[2025-10-13 14:17:16] 2025-10-13 03:16:14,433 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:17:16] 2025-10-13 03:16:14,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:17:16] 2025-10-13 03:16:14,436 | INFO     | did not find any defunct processes belonging to 3561865
[2025-10-13 14:17:16] 2025-10-13 03:16:14,439 | INFO     | did not find any defunct processes belonging to 3561865
[2025-10-13 14:17:16] 2025-10-13 03:16:14,439 | INFO     | ready for new job
[2025-10-13 14:17:16] 2025-10-13 03:16:14,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:17:16] 2025-10-13 03:16:14,440 | INFO     | ***************************************
[2025-10-13 14:17:16] 2025-10-13 03:16:14,441 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 14:17:16] 2025-10-13 03:16:14,441 | INFO     | ***************************************
[2025-10-13 14:17:16] 2025-10-13 03:16:14,441 | INFO     | 
[2025-10-13 14:17:16] 2025-10-13 03:16:14,441 | INFO     | architecture information:
[2025-10-13 14:17:16] 2025-10-13 03:16:14,442 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:17:16] 2025-10-13 03:16:14,470 | INFO     | cat /etc/os-release:
[2025-10-13 14:17:16] NAME="CentOS Linux"
[2025-10-13 14:17:16] VERSION="7 (Core)"
[2025-10-13 14:17:16] ID="centos"
[2025-10-13 14:17:16] ID_LIKE="rhel fedora"
[2025-10-13 14:17:16] VERSION_ID="7"
[2025-10-13 14:17:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:17:16] ANSI_COLOR="0;31"
[2025-10-13 14:17:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:17:16] HOME_URL="https://www.centos.org/"
[2025-10-13 14:17:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:17:16] 
[2025-10-13 14:17:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:17:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:17:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:17:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:17:16] 
[2025-10-13 14:17:16] 2025-10-13 03:16:14,470 | INFO     | ***************************************
[2025-10-13 14:17:16] 2025-10-13 03:16:14,973 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 14:17:16] 2025-10-13 03:16:14,993 | INFO     | sufficient remaining disk space (408518918144 B)
[2025-10-13 14:17:16] 2025-10-13 03:16:14,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:17:16] 2025-10-13 03:16:14,993 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:17:16] 2025-10-13 03:16:14,993 | INFO     | update_server=False
[2025-10-13 14:17:16] 2025-10-13 03:16:14,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:17:16] 2025-10-13 03:16:14,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:17:16] 2025-10-13 03:16:14,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:17:16] 2025-10-13 03:16:15,052 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:17:16] 2025-10-13 03:16:15,052 | INFO     | aborting loop
[2025-10-13 14:17:16] 2025-10-13 03:16:15,096 | INFO     | all data control threads have been joined
[2025-10-13 14:17:16] 2025-10-13 03:16:15,405 | INFO     | all payload control threads have been joined
[2025-10-13 14:17:16] 2025-10-13 03:16:15,999 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:16,058 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:16,101 | INFO     | [data] control thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:16,134 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:16,203 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:16,410 | INFO     | [payload] control thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:16,656 | INFO     | all job control threads have been joined
[2025-10-13 14:17:16] 2025-10-13 03:16:16,765 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:16,999 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:17,180 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:17,185 | INFO     | [job] validate thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:17,383 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:17,421 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:17,661 | INFO     | [job] control thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:17,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:17:16] 2025-10-13 03:16:18,999 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:19,000 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:25,129 | INFO     | job.realtimelogging is not enabled
[2025-10-13 14:17:16] 2025-10-13 03:16:26,134 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:17:16] 2025-10-13 03:16:46,002 | INFO     | PID=3555002 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 14:17:16] 2025-10-13 03:16:46,002 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:17:16] 2025-10-13 03:16:46,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:17:16] 2025-10-13 03:16:46,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:17:16] 2025-10-13 03:17:11,133 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:17:16] 2025-10-13 03:17:11,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139482025793344)>', '<ExcThread(monitor, started 139480807765760)>']
[2025-10-13 14:17:16] 2025-10-13 03:17:12,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:17:16] 2025-10-13 03:17:12,119 | INFO     | [monitor] control thread has ended
[2025-10-13 14:17:16] 2025-10-13 03:17:16,414 | INFO     | all workflow threads have been joined
[2025-10-13 14:17:16] 2025-10-13 03:17:16,414 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:17:16] 2025-10-13 03:17:16,414 | INFO     | traces error code: 0
[2025-10-13 14:17:16] 2025-10-13 03:17:16,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:17:16] 2025-10-13 03:17:16,538 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:17:16] 2025-10-13 03:17:16,542 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:17:16] 2025-10-13 03:17:16,544 [wrapper] pilotpid: 3555002
[2025-10-13 14:17:16] 2025-10-13 03:17:16,547 [wrapper] Pilot exit status: 0
[2025-10-13 14:17:16] 2025-10-13 03:17:16,558 [wrapper] pandaids: 6838366435
[2025-10-13 14:17:16] 2025-10-13 03:17:16,591 [wrapper] cleanup supervisor_pilot 3605111 3555003
[2025-10-13 14:17:16] 2025-10-13 03:17:16,594 [wrapper] Test setup, not cleaning
[2025-10-13 14:17:16] 2025-10-13 03:17:16,598 [wrapper] apfmon messages muted
[2025-10-13 14:17:16] 2025-10-13 03:17:16,602 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:17:16] 2025-10-13 03:17:16,604 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:17:16]  *** Error codes and diagnostics ***
[2025-10-13 14:17:16]     "exeErrorCode": 0,
[2025-10-13 14:17:16]     "exeErrorDiag": "",
[2025-10-13 14:17:16]     "pilotErrorCode": 0,
[2025-10-13 14:17:16]     "pilotErrorDiag": "",
[2025-10-13 14:17:16]  *** Listing of results directory ***
[2025-10-13 14:17:16] total 411972
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc    557409 Oct 11 22:21 pilot3.tar.gz
[2025-10-13 14:17:16] -rwx------ 1 boinc boinc     36292 Oct 11 22:59 runpilot2-wrapper.sh
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc      5112 Oct 11 22:59 queuedata.json
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc       100 Oct 13 13:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:17:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 13:02 run_atlas
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc       105 Oct 13 13:02 job.xml
[2025-10-13 14:17:16] -rw-r--r-- 2 boinc boinc 220302360 Oct 13 13:02 EVNT.46676267._002301.pool.root.1
[2025-10-13 14:17:16] drwxrwx--x 2 boinc boinc      4096 Oct 13 13:02 shared
[2025-10-13 14:17:16] -rw-r--r-- 2 boinc boinc    569673 Oct 13 13:02 input.tar.gz
[2025-10-13 14:17:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:02 start_atlas.sh
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:02 boinc_setup_complete
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc      9348 Oct 13 13:02 init_data.xml
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:02 boinc_lockfile
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc      2550 Oct 13 13:02 pandaJob.out
[2025-10-13 14:17:16] -rw------- 1 boinc boinc    975595 Oct 13 13:02 agis_schedconf.cvmfs.json
[2025-10-13 14:17:16] -rw------- 1 boinc boinc   1560580 Oct 13 13:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:17:16] drwx------ 5 boinc boinc      4096 Oct 13 13:03 pilot3
[2025-10-13 14:17:16] -rw------- 1 boinc boinc 195600696 Oct 13 14:15 HITS.46676269._057318.pool.root.1
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc       529 Oct 13 14:15 boinc_task_state.xml
[2025-10-13 14:17:16] -rw------- 1 boinc boinc      1018 Oct 13 14:15 memory_monitor_summary.json
[2025-10-13 14:17:16] -rw------- 1 boinc boinc    381710 Oct 13 14:16 log.46676269._057318.job.log.tgz.1
[2025-10-13 14:17:16] -rw------- 1 boinc boinc        95 Oct 13 14:16 pilot_heartbeat.json
[2025-10-13 14:17:16] -rw------- 1 boinc boinc      7776 Oct 13 14:16 heartbeat.json
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:17 boinc_mmap_file
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc        27 Oct 13 14:17 wrapper_checkpoint.txt
[2025-10-13 14:17:16] -rw------- 1 boinc boinc      4821 Oct 13 14:17 pilotlog.txt
[2025-10-13 14:17:16] -rw------- 1 boinc boinc    639821 Oct 13 14:17 log.46676269._057318.job.log.1
[2025-10-13 14:17:16] -rw------- 1 boinc boinc       357 Oct 13 14:17 output.list
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc       620 Oct 13 14:17 runtime_log
[2025-10-13 14:17:16] -rw------- 1 boinc boinc   1044480 Oct 13 14:17 result.tar.gz
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc      8703 Oct 13 14:17 runtime_log.err
[2025-10-13 14:17:16] -rw------- 1 boinc boinc       650 Oct 13 14:17 JMhMDmwQnR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6NgNDmKcbD5n.diag
[2025-10-13 14:17:16] -rw-r--r-- 1 boinc boinc     22280 Oct 13 14:17 stderr.txt
[2025-10-13 14:17:16] HITS file was successfully produced:
[2025-10-13 14:17:16] -rw------- 1 boinc boinc 195600696 Oct 13 14:15 shared/HITS.pool.root.1
[2025-10-13 14:17:16]  *** Contents of shared directory: ***
[2025-10-13 14:17:16] total 407760
[2025-10-13 14:17:16] -rw-r--r-- 2 boinc boinc 220302360 Oct 13 13:02 ATLAS.root_0
[2025-10-13 14:17:16] -rw-r--r-- 2 boinc boinc    569673 Oct 13 13:02 input.tar.gz
[2025-10-13 14:17:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:02 start_atlas.sh
[2025-10-13 14:17:16] -rw------- 1 boinc boinc 195600696 Oct 13 14:15 HITS.pool.root.1
[2025-10-13 14:17:16] -rw------- 1 boinc boinc   1044480 Oct 13 14:17 result.tar.gz
14:17:17 (3551153): run_atlas exited; CPU time 47165.295042
14:17:17 (3551153): called boinc_finish(0)

</stderr_txt>
]]>

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