Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 15:24:34 (2744): vboxwrapper version 26210
2025-10-12 15:24:34 (2744): BOINC client version: 8.0.2
2025-10-12 15:24:34 (2744): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-12 15:24:34 (2744): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 15:24:35 (2744): Create VM. (boinc_dfa6dc9038b71cf2, slot#1)
2025-10-12 15:24:35 (2744): Setting Memory Size for VM. (5900MB)
2025-10-12 15:24:35 (2744): Setting CPU Count for VM. (3)
2025-10-12 15:24:36 (2744): Setting Chipset Options for VM.
2025-10-12 15:24:36 (2744): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 15:24:36 (2744): Setting Boot Options for VM.
2025-10-12 15:24:37 (2744): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 15:24:37 (2744): Enabling VM Network Access.
2025-10-12 15:24:37 (2744): Disabling USB Support for VM.
2025-10-12 15:24:37 (2744): Disabling COM Port Support for VM.
2025-10-12 15:24:38 (2744): Disabling LPT Port Support for VM.
2025-10-12 15:24:38 (2744): Disabling Audio Support for VM.
2025-10-12 15:24:38 (2744): Disabling Clipboard Support for VM.
2025-10-12 15:24:38 (2744): Disabling Drag and Drop Support for VM.
2025-10-12 15:24:39 (2744): Adding storage controller(s) to VM.
2025-10-12 15:24:39 (2744): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 15:24:41 (2744): Adding VirtualBox Guest Additions to VM.
2025-10-12 15:24:41 (2744): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 15:24:42 (2744): forwarding host port 59739 to guest port 80
2025-10-12 15:24:42 (2744): Enabling remote desktop for VM.
2025-10-12 15:24:42 (2744): Enabling shared directory for VM.
2025-10-12 15:24:43 (2744): Starting VM using VBoxManage interface. (boinc_dfa6dc9038b71cf2, slot#1)
2025-10-12 15:24:48 (2744): Successfully started VM. (PID = '16872')
2025-10-12 15:24:48 (2744): Reporting VM Process ID to BOINC.
2025-10-12 15:24:48 (2744): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-12 15:24:48 (2744): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 15:24:48 (2744): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 15:24:48 (2744): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 15:24:48 (2744): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 15:24:48 (2744): Detected: Web Application Enabled (http://localhost:59739)
2025-10-12 15:24:48 (2744): Detected: Remote Desktop Enabled (localhost:59740)
2025-10-12 15:24:48 (2744): Preference change detected
2025-10-12 15:24:48 (2744): Setting CPU throttle for VM. (100%)
2025-10-12 15:24:49 (2744): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 15:24:50 (2744): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 15:24:50 (2744): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 15:24:52 (2744): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 15:24:52 (2744): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 15:24:52 (2744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 15:24:57 (2744): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 15:24:57 (2744): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 15:25:01 (2744): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.000144 main     Log opened 2025-10-12T15:24:59.526432000Z
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.000224 main     OS Product: Linux
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.000253 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.000276 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.000299 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.000300 main     Process ID: 1343
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.000301 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 15:25:01 (2744): Guest Log: 00:00:00.001010 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 15:25:01 (2744): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 15:25:01 (2744): Guest Log: [INFO] Mounting shared directory
2025-10-12 15:25:01 (2744): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 15:25:04 (2744): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 15:25:04 (2744): Guest Log: [INFO] Detected branch: prod
2025-10-12 15:25:05 (2744): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 15:25:05 (2744): Guest Log: Copying input files
2025-10-12 15:25:05 (2744): Guest Log: Copied input files into RunAtlas.
2025-10-12 15:25:06 (2744): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-12 15:25:11 (2744): Guest Log: 00:00:10.002691 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 834 849 000ns (GuestNow=1 760 275 511 693 555 000 ns GuestLast=1 760 282 699 528 404 000 ns fSetTimeLastLoop=true )
2025-10-12 15:25:14 (2744): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 15:25:14 (2744): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 15:25:14 (2744): Guest Log: 2.6.3.0 1638 0 31652 151621 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-12 15:25:14 (2744): Guest Log: copied the webapp to /var/www
2025-10-12 15:25:14 (2744): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-12 15:25:14 (2744): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-12 15:25:15 (2744): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 15:25:15 (2744): Guest Log:  *** Starting ATLAS job. (PandaID=6838454860 taskID=46676269) ***
2025-10-12 17:04:54 (2744): Status Report: Elapsed Time: '6000.000000'
2025-10-12 17:04:54 (2744): Status Report: CPU Time: '16662.250000'
2025-10-12 18:44:59 (2744): Status Report: Elapsed Time: '12000.000000'
2025-10-12 18:44:59 (2744): Status Report: CPU Time: '34609.437500'
2025-10-12 18:53:09 (2744): Guest Log:  *** Job finished ***
2025-10-12 18:53:09 (2744): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:52:52,227 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:52:52,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:03,823 | INFO     | [monitor] cgroup control has ended
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:04,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226803644224)>', '<ExcThread(monitor, started 140225808410368)>']
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:04,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:04,314 | INFO     | [monitor] control thread has ended
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,106 | INFO     | all workflow threads have been joined
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,106 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,107 | INFO     | traces error code: 0
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,172 [wrapper] ==== pilot stdout END ====
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,176 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,179 [wrapper] pilotpid: 6003
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,182 [wrapper] Pilot exit status: 0
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,276 [wrapper] pandaids: 6838454860
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,300 [wrapper] cleanup supervisor_pilot 11984 6004
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,303 [wrapper] Test setup, not cleaning
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,307 [wrapper] apfmon messages muted
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,310 [wrapper] ==== wrapper stdout END ====
2025-10-12 18:53:09 (2744): Guest Log: 2025-10-12 16:53:09,316 [wrapper] ==== wrapper stderr END ====
2025-10-12 18:53:09 (2744): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 18:53:09 (2744): Guest Log:     "exeErrorCode": 0,
2025-10-12 18:53:09 (2744): Guest Log:     "exeErrorDiag": "",
2025-10-12 18:53:09 (2744): Guest Log:     "pilotErrorCode": 0,
2025-10-12 18:53:09 (2744): Guest Log:     "pilotErrorDiag": "",
2025-10-12 18:53:09 (2744): Guest Log:  *** Listing of results directory ***
2025-10-12 18:53:09 (2744): Guest Log: total 202752
2025-10-12 18:53:09 (2744): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 14:01 pilot3.tar.gz
2025-10-12 18:53:09 (2744): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 14:50 queuedata.json
2025-10-12 18:53:09 (2744): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 14:50 runpilot2-wrapper.sh
2025-10-12 18:53:09 (2744): Guest Log: -rwxr-xr-x. 1 atlas atlas      9330 Oct 12 13:25 init_data.xml
2025-10-12 18:53:09 (2744): Guest Log: -rwxr-xr-x. 1 atlas atlas    569682 Oct 12 13:25 input.tar.gz
2025-10-12 18:53:09 (2744): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 13:25 start_atlas.sh
2025-10-12 18:53:09 (2744): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 13:25 EVNT.46676267._002403.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 18:53:09 (2744): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 13:25 pandaJob.out
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 12 13:25 agis_schedconf.cvmfs.json
2025-10-12 18:53:09 (2744): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 13:25 pilot3
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas 199649003 Oct 12 16:51 HITS.46676269._059546.pool.root.1
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas      1031 Oct 12 16:52 memory_monitor_summary.json
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 16:52 pilot_heartbeat.json
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 16:52 agis_ddmendpoints.agis.ALL.json
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas    370660 Oct 12 16:52 log.46676269._059546.job.log.tgz.1
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas      7794 Oct 12 16:52 heartbeat.json
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas      4991 Oct 12 16:53 pilotlog.txt
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas   1695634 Oct 12 16:53 log.46676269._059546.job.log.1
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 16:53 output.list
2025-10-12 18:53:09 (2744): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 16:53 runtime_log
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas   2088960 Oct 12 16:53 result.tar.gz
2025-10-12 18:53:09 (2744): Guest Log: -rw-r--r--. 1 atlas atlas      8627 Oct 12 16:53 runtime_log.err
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas       657 Oct 12 16:53 GqJKDmy6pR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmh5RMDmLE16Rm.diag
2025-10-12 18:53:09 (2744): Guest Log: Looking for outputfile HITS.46676269._059546.pool.root.1
2025-10-12 18:53:09 (2744): Guest Log: HITS file was successfully produced
2025-10-12 18:53:09 (2744): Guest Log: -rw-------. 1 atlas atlas 199649003 Oct 12 16:51 /home/atlas/RunAtlas/HITS.46676269._059546.pool.root.1
2025-10-12 18:53:10 (2744): Guest Log: Successfully finished the ATLAS job!
2025-10-12 18:53:10 (2744): Guest Log: Copying the results back to the shared directory!
2025-10-12 18:53:10 (2744): Guest Log:  *** Contents of shared directory: ***
2025-10-12 18:53:10 (2744): Guest Log: total 412028
2025-10-12 18:53:10 (2744): Guest Log: -rwxrwxrwx. 1 root root 219581804 Oct 12 13:24 ATLAS.root_0
2025-10-12 18:53:10 (2744): Guest Log: -rwxrwxrwx. 1 root root 199649003 Oct 12 16:53 HITS.pool.root.1
2025-10-12 18:53:10 (2744): Guest Log: -rwxrwxrwx. 1 root root      9330 Oct 12 13:24 init_data.xml
2025-10-12 18:53:10 (2744): Guest Log: -rwxrwxrwx. 1 root root    569682 Oct 11 17:03 input.tar.gz
2025-10-12 18:53:10 (2744): Guest Log: -rwxrwxrwx. 1 root root   2088960 Oct 12 16:53 result.tar.gz
2025-10-12 18:53:10 (2744): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 17:03 start_atlas.sh
2025-10-12 18:53:10 (2744): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 18:53:10 (2744): VM Completion File Detected.
2025-10-12 18:53:10 (2744): Powering off VM.
2025-10-12 18:53:11 (2744): Successfully stopped VM.
2025-10-12 18:53:11 (2744): Deregistering VM. (boinc_dfa6dc9038b71cf2, slot#1)
2025-10-12 18:53:11 (2744): Removing network bandwidth throttle group from VM.
2025-10-12 18:53:11 (2744): Removing VM from VirtualBox.
2025-10-12 18:53:16 (2744): called boinc_finish(0)

</stderr_txt>
]]>

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