Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
10:36:23 (3394508): wrapper (7.7.26015): starting
10:36:23 (3394508): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 10:36:23] Arguments: --nthreads 12
[2025-10-13 10:36:23] Threads: 12
[2025-10-13 10:36:23] Checking for CVMFS
[2025-10-13 10:36:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:36:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:36:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:36:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:36:23] 2.13.2.0 13441 14170 59364 151641 0 57 5800910 6144000 0 130560 0 12501238 99.992 437830 61 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 10:36:23] CVMFS is ok
[2025-10-13 10:36:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:36:24] Checking for apptainer binary...
[2025-10-13 10:36:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:36:24] Running /usr/bin/apptainer --version
[2025-10-13 10:36:24] apptainer version 1.4.3
[2025-10-13 10:36:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:36:44] MINIPC-PN51-E1
[2025-10-13 10:36:44] apptainer works
[2025-10-13 10:36:44] Set ATHENA_PROC_NUMBER=12
[2025-10-13 10:36:44] Set ATHENA_CORE_NUMBER=12
[2025-10-13 10:36:44] Starting ATLAS job with PandaID=6838366389
[2025-10-13 10:36:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:50:14]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:50:14]  workdir=None
[2025-10-13 11:50:14] ]
[2025-10-13 11:50:14] 2025-10-13 00:49:28,758 | INFO     | transferring file log.46676269._057272.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6838366389/log.46676269._057272.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 11:50:14] 2025-10-13 00:49:28,758 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6838366389/log.46676269._057272.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._057272.job
[2025-10-13 11:50:14] 2025-10-13 00:49:28,774 | INFO     | adding to output.list: log.46676269._057272.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/b0/log.46676269._057272.job.log.tg
[2025-10-13 11:50:14] 2025-10-13 00:49:28,775 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 11:50:14] 2025-10-13 00:49:28,775 | INFO     | summary of transferred files:
[2025-10-13 11:50:14] 2025-10-13 00:49:28,775 | INFO     |  -- lfn=log.46676269._057272.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 11:50:14] 2025-10-13 00:49:28,775 | INFO     | stage-out finished correctly
[2025-10-13 11:50:14] 2025-10-13 00:49:28,811 | INFO     | time since job start (4349s) is within the limit (172800.0s)
[2025-10-13 11:50:14] 2025-10-13 00:49:30,282 | INFO     | monitor loop #325: job 0:6838366389 is in state 'finished'
[2025-10-13 11:50:14] 2025-10-13 00:49:30,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:50:14] 2025-10-13 00:49:30,821 | INFO     | time since job start (4351s) is within the limit (172800.0s)
[2025-10-13 11:50:14] 2025-10-13 00:49:32,059 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 11:50:14] 2025-10-13 00:49:32,189 | INFO     | job 6838366389 has state=finished
[2025-10-13 11:50:14] 2025-10-13 00:49:32,189 | INFO     | preparing for final server update for job 6838366389 in state='finished'
[2025-10-13 11:50:14] 2025-10-13 00:49:32,190 | INFO     | this job has now completed (state=finished)
[2025-10-13 11:50:14] 2025-10-13 00:49:32,190 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 11:50:14] 2025-10-13 00:49:32,190 | INFO     | log transfer has been attempted: DONE
[2025-10-13 11:50:14] 2025-10-13 00:49:32,190 | INFO     | job 6838366389 has finished - writing final server update
[2025-10-13 11:50:14] 2025-10-13 00:49:32,190 | INFO     | total number of processed events: 400 (read)
[2025-10-13 11:50:14] 2025-10-13 00:49:32,192 | INFO     | executing command: lscpu
[2025-10-13 11:50:14] 2025-10-13 00:49:32,210 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 11:50:14] 2025-10-13 00:49:32,786 | INFO     | monitor loop #326: job 0:6838366389 is in state 'finished'
[2025-10-13 11:50:14] 2025-10-13 00:49:32,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:50:14] 2025-10-13 00:49:32,827 | INFO     | time since job start (4353s) is within the limit (172800.0s)
[2025-10-13 11:50:14] 2025-10-13 00:49:34,832 | INFO     | time since job start (4355s) is within the limit (172800.0s)
[2025-10-13 11:50:14] 2025-10-13 00:49:35,289 | INFO     | monitor loop #327: job 0:6838366389 is in state 'finished'
[2025-10-13 11:50:14] 2025-10-13 00:49:35,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:50:14] 2025-10-13 00:49:36,837 | INFO     | time since job start (4357s) is within the limit (172800.0s)
[2025-10-13 11:50:14] 2025-10-13 00:49:37,792 | INFO     | monitor loop #328: job 0:6838366389 is in state 'finished'
[2025-10-13 11:50:14] 2025-10-13 00:49:37,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:50:14] 2025-10-13 00:49:38,842 | INFO     | time since job start (4359s) is within the limit (172800.0s)
[2025-10-13 11:50:14] 2025-10-13 00:49:40,295 | INFO     | monitor loop #329: job 0:6838366389 is in state 'finished'
[2025-10-13 11:50:14] 2025-10-13 00:49:40,295 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:50:14] 2025-10-13 00:49:40,847 | INFO     | time since job start (4361s) is within the limit (172800.0s)
[2025-10-13 11:50:14] 2025-10-13 00:49:41,559 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 11:50:14] 2025-10-13 00:49:41,561 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2623.838
[2025-10-13 11:50:14] 2025-10-13 00:49:41,564 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6838366389/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 11:50:14] 2025-10-13 00:49:41,565 | INFO     | extracted standard info from prmon json
[2025-10-13 11:50:14] 2025-10-13 00:49:41,565 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 11:50:14] 2025-10-13 00:49:41,565 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 11:50:14] 2025-10-13 00:49:41,565 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 11:50:14] 2025-10-13 00:49:41,565 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 11:50:14] 2025-10-13 00:49:41,566 | INFO     | fitting pss+swap vs Time
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | sum of square deviations: 81266640.0
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | sum of deviations: -11695178274.0
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | mean x: 1760314469.5
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | mean y: 2926984.9375
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | -- intersect: 253331864161.42514
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | intersect: 253331864161.42514
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | chi2: 0.10098127827369206
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | -- intersect: 253331864161.42514
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | current memory leak: -143.91 B/s (using 64 data points, chi2=0.10)
[2025-10-13 11:50:14] 2025-10-13 00:49:41,567 | INFO     | could have reported an average CPU frequency of 2439 MHz (6 samples)
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | ..............................
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . Timing measurements:
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . get job = 0 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . initial setup = 6 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . payload setup = 5 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . stage-in = 0 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . payload execution = 4325 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . stage-out = 0 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | . log creation = 0 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,568 | INFO     | ..............................
[2025-10-13 11:50:14] 2025-10-13 00:49:41,624 | INFO     | 
[2025-10-13 11:50:14] 2025-10-13 00:49:41,624 | INFO     | job summary report
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | --------------------------------------------------
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | PanDA job id: 6838366389
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | task id: 46676269
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | errors: (none)
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | pilot state: finished 
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | transexitcode: 0
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | exeerrorcode: 0
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | exeerrordiag: 
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | exitcode: 0
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | exitmsg: OK
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | cpuconsumptiontime: 46483 s
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | nevents: 400
[2025-10-13 11:50:14] 2025-10-13 00:49:41,625 | INFO     | neventsw: 0
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | pid: 3406056
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | pgrp: 3406056
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | corecount: 12
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | event service: False
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | sizes: {0: 2348630, 1: 2348885, 5: 2349147, 11: 2349203, 4335: 2384391, 4338: 2384391, 4348: 2384713}
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | --------------------------------------------------
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | 
[2025-10-13 11:50:14] 2025-10-13 00:49:41,626 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,647 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | job 6838366389 has completed (purged errors)
[2025-10-13 11:50:14] 2025-10-13 00:49:41,648 | INFO     | overall cleanup function is called
[2025-10-13 11:50:14] 2025-10-13 00:49:42,653 | INFO     | --- collectZombieJob: --- 10, [3406056]
[2025-10-13 11:50:14] 2025-10-13 00:49:42,654 | INFO     | zombie collector waiting for pid 3406056
[2025-10-13 11:50:14] 2025-10-13 00:49:42,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:50:14] 2025-10-13 00:49:42,654 | INFO     | collected zombie processes
[2025-10-13 11:50:14] 2025-10-13 00:49:42,654 | INFO     | will attempt to kill all subprocesses of pid=3406056
[2025-10-13 11:50:14] 2025-10-13 00:49:42,729 | INFO     | process IDs to be killed: [3406056] (in reverse order)
[2025-10-13 11:50:14] 2025-10-13 00:49:42,775 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:50:14] 2025-10-13 00:49:42,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:50:14] 2025-10-13 00:49:42,779 | INFO     | did not find any defunct processes belonging to 3406056
[2025-10-13 11:50:14] 2025-10-13 00:49:42,783 | INFO     | did not find any defunct processes belonging to 3406056
[2025-10-13 11:50:14] 2025-10-13 00:49:42,783 | INFO     | ready for new job
[2025-10-13 11:50:14] 2025-10-13 00:49:42,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:50:14] 2025-10-13 00:49:42,784 | INFO     | ***************************************
[2025-10-13 11:50:14] 2025-10-13 00:49:42,785 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:50:14] 2025-10-13 00:49:42,785 | INFO     | ***************************************
[2025-10-13 11:50:14] 2025-10-13 00:49:42,785 | INFO     | 
[2025-10-13 11:50:14] 2025-10-13 00:49:42,786 | INFO     | architecture information:
[2025-10-13 11:50:14] 2025-10-13 00:49:42,786 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:50:14] 2025-10-13 00:49:42,803 | INFO     | cat /etc/os-release:
[2025-10-13 11:50:14] NAME="CentOS Linux"
[2025-10-13 11:50:14] VERSION="7 (Core)"
[2025-10-13 11:50:14] ID="centos"
[2025-10-13 11:50:14] ID_LIKE="rhel fedora"
[2025-10-13 11:50:14] VERSION_ID="7"
[2025-10-13 11:50:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:50:14] ANSI_COLOR="0;31"
[2025-10-13 11:50:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:50:14] HOME_URL="https://www.centos.org/"
[2025-10-13 11:50:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:50:14] 
[2025-10-13 11:50:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:50:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:50:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:50:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:50:14] 
[2025-10-13 11:50:14] 2025-10-13 00:49:42,803 | INFO     | ***************************************
[2025-10-13 11:50:14] 2025-10-13 00:49:43,306 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 11:50:14] 2025-10-13 00:49:43,323 | INFO     | sufficient remaining disk space (407593025536 B)
[2025-10-13 11:50:14] 2025-10-13 00:49:43,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:50:14] 2025-10-13 00:49:43,323 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:50:14] 2025-10-13 00:49:43,323 | INFO     | update_server=False
[2025-10-13 11:50:14] 2025-10-13 00:49:43,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:50:14] 2025-10-13 00:49:43,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:50:14] 2025-10-13 00:49:43,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:50:14] 2025-10-13 00:49:43,531 | INFO     | all payload control threads have been joined
[2025-10-13 11:50:14] 2025-10-13 00:49:43,655 | INFO     | all data control threads have been joined
[2025-10-13 11:50:14] 2025-10-13 00:49:43,771 | INFO     | all job control threads have been joined
[2025-10-13 11:50:14] 2025-10-13 00:49:43,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:50:14] 2025-10-13 00:49:43,803 | INFO     | aborting loop
[2025-10-13 11:50:14] 2025-10-13 00:49:44,326 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:44,329 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:44,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:50:14] 2025-10-13 00:49:44,348 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:44,472 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:44,536 | INFO     | [payload] control thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:44,660 | INFO     | [data] control thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:44,776 | INFO     | [job] control thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:44,808 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:45,084 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:45,279 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:45,320 | INFO     | [job] validate thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:45,403 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:45,416 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:46,339 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:47,330 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:49:53,741 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:50:14] 2025-10-13 00:49:54,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:50:14] 2025-10-13 00:50:05,748 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:50:14] 2025-10-13 00:50:05,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127778717615936)>', '<ExcThread(monitor, started 127777919444736)>']
[2025-10-13 11:50:14] 2025-10-13 00:50:10,812 | INFO     | all workflow threads have been joined
[2025-10-13 11:50:14] 2025-10-13 00:50:10,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:50:14] 2025-10-13 00:50:10,812 | INFO     | traces error code: 0
[2025-10-13 11:50:14] 2025-10-13 00:50:10,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:50:14] 2025-10-13 00:50:14,063 | INFO     | PID=3398615 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 11:50:14] 2025-10-13 00:50:14,073 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:50:14] 2025-10-13 00:50:14,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:50:14] 2025-10-13 00:50:14,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:50:14] 2025-10-13 00:50:14,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:50:14] 2025-10-13 00:50:14,073 | INFO     | [monitor] control thread has ended
[2025-10-13 11:50:14] 2025-10-13 00:50:14,213 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:50:14] 2025-10-13 00:50:14,216 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:50:14] 2025-10-13 00:50:14,219 [wrapper] pilotpid: 3398615
[2025-10-13 11:50:14] 2025-10-13 00:50:14,223 [wrapper] Pilot exit status: 0
[2025-10-13 11:50:14] 2025-10-13 00:50:14,239 [wrapper] pandaids: 6838366389
[2025-10-13 11:50:14] 2025-10-13 00:50:14,274 [wrapper] cleanup supervisor_pilot 3456965 3398616
[2025-10-13 11:50:14] 2025-10-13 00:50:14,277 [wrapper] Test setup, not cleaning
[2025-10-13 11:50:14] 2025-10-13 00:50:14,281 [wrapper] apfmon messages muted
[2025-10-13 11:50:14] 2025-10-13 00:50:14,284 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:50:14] 2025-10-13 00:50:14,287 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:50:14]  *** Error codes and diagnostics ***
[2025-10-13 11:50:14]     "exeErrorCode": 0,
[2025-10-13 11:50:14]     "exeErrorDiag": "",
[2025-10-13 11:50:14]     "pilotErrorCode": 0,
[2025-10-13 11:50:14]     "pilotErrorDiag": "",
[2025-10-13 11:50:14]  *** Listing of results directory ***
[2025-10-13 11:50:14] total 413416
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc    557409 Oct 11 22:21 pilot3.tar.gz
[2025-10-13 11:50:14] -rwx------ 1 boinc boinc     36292 Oct 11 22:54 runpilot2-wrapper.sh
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc      5112 Oct 11 22:54 queuedata.json
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:50:14] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:36 run_atlas
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:36 job.xml
[2025-10-13 11:50:14] -rw-r--r-- 2 boinc boinc 222245851 Oct 13 10:36 EVNT.46676267._002299.pool.root.1
[2025-10-13 11:50:14] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:36 shared
[2025-10-13 11:50:14] -rw-r--r-- 2 boinc boinc    569676 Oct 13 10:36 input.tar.gz
[2025-10-13 11:50:14] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:36 start_atlas.sh
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:36 boinc_setup_complete
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc      9348 Oct 13 10:36 init_data.xml
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:36 boinc_lockfile
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:36 pandaJob.out
[2025-10-13 11:50:14] -rw------- 1 boinc boinc    975603 Oct 13 10:36 agis_schedconf.cvmfs.json
[2025-10-13 11:50:14] -rw------- 1 boinc boinc   1560580 Oct 13 10:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:50:14] drwx------ 5 boinc boinc      4096 Oct 13 10:36 pilot3
[2025-10-13 11:50:14] -rw------- 1 boinc boinc 195152706 Oct 13 11:49 HITS.46676269._057272.pool.root.1
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc       529 Oct 13 11:49 boinc_task_state.xml
[2025-10-13 11:50:14] -rw------- 1 boinc boinc      1018 Oct 13 11:49 memory_monitor_summary.json
[2025-10-13 11:50:14] -rw------- 1 boinc boinc    385188 Oct 13 11:49 log.46676269._057272.job.log.tgz.1
[2025-10-13 11:50:14] -rw------- 1 boinc boinc      7781 Oct 13 11:49 heartbeat.json
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc        27 Oct 13 11:49 wrapper_checkpoint.txt
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc      8192 Oct 13 11:49 boinc_mmap_file
[2025-10-13 11:50:14] -rw------- 1 boinc boinc       747 Oct 13 11:50 pilotlog.txt
[2025-10-13 11:50:14] -rw------- 1 boinc boinc        95 Oct 13 11:50 pilot_heartbeat.json
[2025-10-13 11:50:14] -rw------- 1 boinc boinc    634710 Oct 13 11:50 log.46676269._057272.job.log.1
[2025-10-13 11:50:14] -rw------- 1 boinc boinc       357 Oct 13 11:50 output.list
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc       620 Oct 13 11:50 runtime_log
[2025-10-13 11:50:14] -rw------- 1 boinc boinc   1034240 Oct 13 11:50 result.tar.gz
[2025-10-13 11:50:14] -rw------- 1 boinc boinc       650 Oct 13 11:50 rxkMDm9LnR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZpRMDmSw0Dcm.diag
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc      8703 Oct 13 11:50 runtime_log.err
[2025-10-13 11:50:14] -rw-r--r-- 1 boinc boinc     21951 Oct 13 11:50 stderr.txt
[2025-10-13 11:50:14] HITS file was successfully produced:
[2025-10-13 11:50:14] -rw------- 1 boinc boinc 195152706 Oct 13 11:49 shared/HITS.pool.root.1
[2025-10-13 11:50:14]  *** Contents of shared directory: ***
[2025-10-13 11:50:14] total 409212
[2025-10-13 11:50:14] -rw-r--r-- 2 boinc boinc 222245851 Oct 13 10:36 ATLAS.root_0
[2025-10-13 11:50:14] -rw-r--r-- 2 boinc boinc    569676 Oct 13 10:36 input.tar.gz
[2025-10-13 11:50:14] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:36 start_atlas.sh
[2025-10-13 11:50:14] -rw------- 1 boinc boinc 195152706 Oct 13 11:49 HITS.pool.root.1
[2025-10-13 11:50:14] -rw------- 1 boinc boinc   1034240 Oct 13 11:50 result.tar.gz
11:50:15 (3394508): run_atlas exited; CPU time 46448.459214
11:50:15 (3394508): called boinc_finish(0)

</stderr_txt>
]]>

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