Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:21:30 (179377): wrapper (7.7.26015): starting
04:21:30 (179377): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 04:21:30] Arguments: --nthreads 6
[2025-10-12 04:21:30] Threads: 6
[2025-10-12 04:21:30] Checking for CVMFS
[2025-10-12 04:21:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:21:34] 2.13.2.0 179578 0 28928 151604 3 1 16197817 81920001 0 130560 0 0 0.000 1291 2133 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://147.213.204.101:3128 1
[2025-10-12 04:21:34] CVMFS is ok
[2025-10-12 04:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:21:34] Further information can be found at the LHC@home message board.
[2025-10-12 04:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:21:34] Checking for apptainer binary...
[2025-10-12 04:21:34] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-12 04:21:34] apptainer is not installed, using version from CVMFS
[2025-10-12 04:21:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:21:34] monitor-atlas.iep
[2025-10-12 04:21:34] apptainer works
[2025-10-12 04:21:34] Set ATHENA_PROC_NUMBER=6
[2025-10-12 04:21:34] Set ATHENA_CORE_NUMBER=6
[2025-10-12 04:21:34] Starting ATLAS job with PandaID=6838365890
[2025-10-12 04:21:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:12:51]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:12:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/aa/log.46676269._056817.job.log.tgz.1
[2025-10-12 05:12:51]  workdir=None
[2025-10-12 05:12:51] ]
[2025-10-12 05:12:51] 2025-10-12 03:12:04,024 | INFO     | transferring file log.46676269._056817.job.log.tgz.1 from /var/lib/boinc/slots/6/PanDA_Pilot-6838365890/log.46676269._056817.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 05:12:51] 2025-10-12 03:12:04,024 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/6/PanDA_Pilot-6838365890/log.46676269._056817.job.log.tgz.1 /var/lib/boinc/slots/6/log.46676269._056817.job
[2025-10-12 05:12:51] 2025-10-12 03:12:04,031 | INFO     | adding to output.list: log.46676269._056817.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/aa/log.46676269._056817.job.log.tg
[2025-10-12 05:12:51] 2025-10-12 03:12:04,031 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 05:12:51] 2025-10-12 03:12:04,031 | INFO     | summary of transferred files:
[2025-10-12 05:12:51] 2025-10-12 03:12:04,031 | INFO     |  -- lfn=log.46676269._056817.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 05:12:51] 2025-10-12 03:12:04,031 | INFO     | stage-out finished correctly
[2025-10-12 05:12:51] 2025-10-12 03:12:04,725 | INFO     | time since job start (3024s) is within the limit (172800.0s)
[2025-10-12 05:12:51] 2025-10-12 03:12:05,065 | INFO     | monitor loop #233: job 0:6838365890 is in state 'finished'
[2025-10-12 05:12:51] 2025-10-12 03:12:05,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:12:51] 2025-10-12 03:12:06,730 | INFO     | time since job start (3026s) is within the limit (172800.0s)
[2025-10-12 05:12:51] 2025-10-12 03:12:07,396 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 05:12:51] 2025-10-12 03:12:07,568 | INFO     | monitor loop #234: job 0:6838365890 is in state 'finished'
[2025-10-12 05:12:51] 2025-10-12 03:12:07,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:12:51] 2025-10-12 03:12:07,776 | INFO     | PID=183580 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 05:12:51] 2025-10-12 03:12:08,776 | INFO     | time since job start (3028s) is within the limit (172800.0s)
[2025-10-12 05:12:51] 2025-10-12 03:12:09,974 | INFO     | job 6838365890 has state=finished
[2025-10-12 05:12:51] 2025-10-12 03:12:09,974 | INFO     | preparing for final server update for job 6838365890 in state='finished'
[2025-10-12 05:12:51] 2025-10-12 03:12:09,974 | INFO     | this job has now completed (state=finished)
[2025-10-12 05:12:51] 2025-10-12 03:12:09,974 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 05:12:51] 2025-10-12 03:12:09,974 | INFO     | log transfer has been attempted: DONE
[2025-10-12 05:12:51] 2025-10-12 03:12:09,974 | INFO     | job 6838365890 has finished - writing final server update
[2025-10-12 05:12:51] 2025-10-12 03:12:09,974 | INFO     | total number of processed events: 400 (read)
[2025-10-12 05:12:51] 2025-10-12 03:12:09,975 | INFO     | executing command: lscpu
[2025-10-12 05:12:51] 2025-10-12 03:12:09,982 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 05:12:51] 2025-10-12 03:12:10,071 | INFO     | monitor loop #235: job 0:6838365890 is in state 'finished'
[2025-10-12 05:12:51] 2025-10-12 03:12:10,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:12:51] 2025-10-12 03:12:10,781 | INFO     | time since job start (3030s) is within the limit (172800.0s)
[2025-10-12 05:12:51] 2025-10-12 03:12:12,575 | INFO     | monitor loop #236: job 0:6838365890 is in state 'finished'
[2025-10-12 05:12:51] 2025-10-12 03:12:12,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:12:51] 2025-10-12 03:12:12,786 | INFO     | time since job start (3032s) is within the limit (172800.0s)
[2025-10-12 05:12:51] 2025-10-12 03:12:13,128 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 05:12:51] 2025-10-12 03:12:13,128 | INFO     | found 6 cores (6 cores per socket, 1 socket) , CPU MHz: 4300.1305
[2025-10-12 05:12:51] 2025-10-12 03:12:13,129 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6838365890/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:12:51] 2025-10-12 03:12:13,129 | INFO     | extracted standard info from prmon json
[2025-10-12 05:12:51] 2025-10-12 03:12:13,129 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 05:12:51] 2025-10-12 03:12:13,129 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:12:51] 2025-10-12 03:12:13,129 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:12:51] 2025-10-12 03:12:13,129 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | fitting pss+swap vs Time
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | sum of square deviations: 24640462.0
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | sum of deviations: 366378077.99999994
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | mean x: 1760237302.0
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | mean y: 2906912.2325581396
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | -- intersect: -26169993560.60214
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | intersect: -26169993560.60214
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | chi2: 0.00016600016873077143
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | -- intersect: -26169993560.60214
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | current memory leak: 14.87 B/s (using 43 data points, chi2=0.00)
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | could have reported an average CPU frequency of 4299 MHz (5 samples)
[2025-10-12 05:12:51] 2025-10-12 03:12:13,130 | INFO     | ..............................
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . Timing measurements:
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . get job = 0 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . initial setup = 1 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . payload setup = 2 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . stage-in = 0 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . payload execution = 3006 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . stage-out = 0 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | . log creation = 0 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,131 | INFO     | ..............................
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | 
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | job summary report
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | --------------------------------------------------
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | PanDA job id: 6838365890
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | task id: 46676269
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | errors: (none)
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | pilot state: finished 
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | transexitcode: 0
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | exeerrorcode: 0
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | exeerrordiag: 
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | exitcode: 0
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | exitmsg: OK
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | cpuconsumptiontime: 17053 s
[2025-10-12 05:12:51] 2025-10-12 03:12:13,162 | INFO     | nevents: 400
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | neventsw: 0
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | pid: 190140
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | pgrp: 190140
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | corecount: 6
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | event service: False
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | sizes: {0: 2348857, 1: 2349119, 10: 2349147, 3011: 2374632, 3012: 2383630, 3015: 2383686, 3021: 2384040}
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | --------------------------------------------------
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | 
[2025-10-12 05:12:51] 2025-10-12 03:12:13,163 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-12 05:12:51] 2025-10-12 03:12:13,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | job 6838365890 has completed (purged errors)
[2025-10-12 05:12:51] 2025-10-12 03:12:13,172 | INFO     | overall cleanup function is called
[2025-10-12 05:12:51] 2025-10-12 03:12:14,178 | INFO     | --- collectZombieJob: --- 10, [190140]
[2025-10-12 05:12:51] 2025-10-12 03:12:14,178 | INFO     | zombie collector waiting for pid 190140
[2025-10-12 05:12:51] 2025-10-12 03:12:14,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:12:51] 2025-10-12 03:12:14,178 | INFO     | collected zombie processes
[2025-10-12 05:12:51] 2025-10-12 03:12:14,178 | INFO     | will attempt to kill all subprocesses of pid=190140
[2025-10-12 05:12:51] 2025-10-12 03:12:14,211 | INFO     | process IDs to be killed: [190140] (in reverse order)
[2025-10-12 05:12:51] 2025-10-12 03:12:14,228 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:12:51] 2025-10-12 03:12:14,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:12:51] 2025-10-12 03:12:14,229 | INFO     | did not find any defunct processes belonging to 190140
[2025-10-12 05:12:51] 2025-10-12 03:12:14,230 | INFO     | did not find any defunct processes belonging to 190140
[2025-10-12 05:12:51] 2025-10-12 03:12:14,230 | INFO     | ready for new job
[2025-10-12 05:12:51] 2025-10-12 03:12:14,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:12:51] 2025-10-12 03:12:14,231 | INFO     | ***************************************
[2025-10-12 05:12:51] 2025-10-12 03:12:14,231 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 05:12:51] 2025-10-12 03:12:14,231 | INFO     | ***************************************
[2025-10-12 05:12:51] 2025-10-12 03:12:14,231 | INFO     | 
[2025-10-12 05:12:51] 2025-10-12 03:12:14,231 | INFO     | architecture information:
[2025-10-12 05:12:51] 2025-10-12 03:12:14,231 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:12:51] 2025-10-12 03:12:14,237 | INFO     | cat /etc/os-release:
[2025-10-12 05:12:51] NAME="CentOS Linux"
[2025-10-12 05:12:51] VERSION="7 (Core)"
[2025-10-12 05:12:51] ID="centos"
[2025-10-12 05:12:51] ID_LIKE="rhel fedora"
[2025-10-12 05:12:51] VERSION_ID="7"
[2025-10-12 05:12:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:12:51] ANSI_COLOR="0;31"
[2025-10-12 05:12:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:12:51] HOME_URL="https://www.centos.org/"
[2025-10-12 05:12:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:12:51] 
[2025-10-12 05:12:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:12:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:12:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:12:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:12:51] 
[2025-10-12 05:12:51] 2025-10-12 03:12:14,237 | INFO     | ***************************************
[2025-10-12 05:12:51] 2025-10-12 03:12:14,740 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-12 05:12:51] 2025-10-12 03:12:14,745 | INFO     | sufficient remaining disk space (870720733184 B)
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | INFO     | update_server=False
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:12:51] 2025-10-12 03:12:14,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:12:51] 2025-10-12 03:12:15,078 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 05:12:51] 2025-10-12 03:12:15,078 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 05:12:51] 2025-10-12 03:12:15,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:12:51] 2025-10-12 03:12:15,078 | INFO     | will abort loop
[2025-10-12 05:12:51] 2025-10-12 03:12:15,355 | INFO     | all payload control threads have been joined
[2025-10-12 05:12:51] 2025-10-12 03:12:15,751 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:15,751 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:15,757 | INFO     | all data control threads have been joined
[2025-10-12 05:12:51] 2025-10-12 03:12:15,975 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,084 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,344 | INFO     | all job control threads have been joined
[2025-10-12 05:12:51] 2025-10-12 03:12:16,360 | INFO     | [payload] control thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,607 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,739 | INFO     | [job] validate thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,744 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,751 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,762 | INFO     | [data] control thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,834 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,885 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:16,963 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:17,349 | INFO     | [job] control thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:17,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:12:51] 2025-10-12 03:12:21,938 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:25,114 | INFO     | job.realtimelogging is not enabled
[2025-10-12 05:12:51] 2025-10-12 03:12:26,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:12:51] 2025-10-12 03:12:44,531 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:12:51] 2025-10-12 03:12:46,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872560854848)>', '<ExcThread(monitor, started 139871440070400)>']
[2025-10-12 05:12:51] 2025-10-12 03:12:46,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:12:51] 2025-10-12 03:12:46,905 | INFO     | [monitor] control thread has ended
[2025-10-12 05:12:51] 2025-10-12 03:12:51,637 | INFO     | all workflow threads have been joined
[2025-10-12 05:12:51] 2025-10-12 03:12:51,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:12:51] 2025-10-12 03:12:51,637 | INFO     | traces error code: 0
[2025-10-12 05:12:51] 2025-10-12 03:12:51,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:12:51] 2025-10-12 03:12:51,678 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:12:51] 2025-10-12 03:12:51,679 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:12:51] 2025-10-12 03:12:51,681 [wrapper] pilotpid: 183580
[2025-10-12 05:12:51] 2025-10-12 03:12:51,682 [wrapper] Pilot exit status: 0
[2025-10-12 05:12:51] 2025-10-12 03:12:51,685 [wrapper] pandaids: 6838365890
[2025-10-12 05:12:51] 2025-10-12 03:12:51,694 [wrapper] cleanup supervisor_pilot  204767 183581
[2025-10-12 05:12:51] 2025-10-12 03:12:51,695 [wrapper] Test setup, not cleaning
[2025-10-12 05:12:51] 2025-10-12 03:12:51,696 [wrapper] apfmon messages muted
[2025-10-12 05:12:51] 2025-10-12 03:12:51,697 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:12:51] 2025-10-12 03:12:51,698 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:12:51]  *** Error codes and diagnostics ***
[2025-10-12 05:12:51]     "exeErrorCode": 0,
[2025-10-12 05:12:51]     "exeErrorDiag": "",
[2025-10-12 05:12:51]     "pilotErrorCode": 0,
[2025-10-12 05:12:51]     "pilotErrorDiag": "",
[2025-10-12 05:12:51]  *** Listing of results directory ***
[2025-10-12 05:12:51] total 412368
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc    557409 Oct 11 13:21 pilot3.tar.gz
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc      5112 Oct 11 13:30 queuedata.json
[2025-10-12 05:12:51] -rwx------ 1 boinc boinc     36292 Oct 11 13:31 runpilot2-wrapper.sh
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc       100 Oct 12 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:12:51] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 04:21 run_atlas
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc       105 Oct 12 04:21 job.xml
[2025-10-12 05:12:51] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:21 start_atlas.sh
[2025-10-12 05:12:51] drwxrwx--x 2 boinc boinc        68 Oct 12 04:21 shared
[2025-10-12 05:12:51] -rw-r--r-- 2 boinc boinc    569684 Oct 12 04:21 input.tar.gz
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc      6549 Oct 12 04:21 init_data.xml
[2025-10-12 05:12:51] -rw-r--r-- 2 boinc boinc 218764444 Oct 12 04:21 EVNT.46676267._002278.pool.root.1
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:21 boinc_lockfile
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc      2550 Oct 12 04:21 pandaJob.out
[2025-10-12 05:12:51] -rw------- 1 boinc boinc    975496 Oct 12 04:21 agis_schedconf.cvmfs.json
[2025-10-12 05:12:51] -rw------- 1 boinc boinc   1560580 Oct 12 04:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:12:51] drwx------ 5 boinc boinc      4096 Oct 12 04:21 pilot3
[2025-10-12 05:12:51] -rw------- 1 boinc boinc 198146819 Oct 12 05:11 HITS.46676269._056817.pool.root.1
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc       529 Oct 12 05:11 boinc_task_state.xml
[2025-10-12 05:12:51] -rw------- 1 boinc boinc        95 Oct 12 05:11 pilot_heartbeat.json
[2025-10-12 05:12:51] -rw------- 1 boinc boinc      1015 Oct 12 05:12 memory_monitor_summary.json
[2025-10-12 05:12:51] -rw------- 1 boinc boinc    266793 Oct 12 05:12 log.46676269._056817.job.log.tgz.1
[2025-10-12 05:12:51] -rw------- 1 boinc boinc      7788 Oct 12 05:12 heartbeat.json
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc      8192 Oct 12 05:12 boinc_mmap_file
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc        27 Oct 12 05:12 wrapper_checkpoint.txt
[2025-10-12 05:12:51] -rw------- 1 boinc boinc      4811 Oct 12 05:12 pilotlog.txt
[2025-10-12 05:12:51] -rw------- 1 boinc boinc    464592 Oct 12 05:12 log.46676269._056817.job.log.1
[2025-10-12 05:12:51] -rw------- 1 boinc boinc       357 Oct 12 05:12 output.list
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc       620 Oct 12 05:12 runtime_log
[2025-10-12 05:12:51] -rw------- 1 boinc boinc    747520 Oct 12 05:12 result.tar.gz
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc      8716 Oct 12 05:12 runtime_log.err
[2025-10-12 05:12:51] -rw------- 1 boinc boinc       655 Oct 12 05:12 8YMODmH0mR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmEmRMDmU9uepm.diag
[2025-10-12 05:12:51] -rw-r--r-- 1 boinc boinc     22390 Oct 12 05:12 stderr.txt
[2025-10-12 05:12:51] HITS file was successfully produced:
[2025-10-12 05:12:51] -rw------- 1 boinc boinc 198146819 Oct 12 05:11 shared/HITS.pool.root.1
[2025-10-12 05:12:51]  *** Contents of shared directory: ***
[2025-10-12 05:12:51] total 408452
[2025-10-12 05:12:51] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:21 start_atlas.sh
[2025-10-12 05:12:51] -rw-r--r-- 2 boinc boinc    569684 Oct 12 04:21 input.tar.gz
[2025-10-12 05:12:51] -rw-r--r-- 2 boinc boinc 218764444 Oct 12 04:21 ATLAS.root_0
[2025-10-12 05:12:51] -rw------- 1 boinc boinc 198146819 Oct 12 05:11 HITS.pool.root.1
[2025-10-12 05:12:51] -rw------- 1 boinc boinc    747520 Oct 12 05:12 result.tar.gz
05:12:53 (179377): run_atlas exited; CPU time 17065.953198
05:12:53 (179377): called boinc_finish(0)

</stderr_txt>
]]>

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