Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 02:20:45 (14398): vboxwrapper version 26210
2025-10-12 02:20:45 (14398): BOINC client version: 8.2.4
2025-10-12 02:20:45 (14398): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-12 02:20:46 (14398): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 02:20:46 (14398): Create VM. (boinc_06c8d71800faf145, slot#3)
2025-10-12 02:20:46 (14398): Setting Memory Size for VM. (4400MB)
2025-10-12 02:20:46 (14398): Setting CPU Count for VM. (4)
2025-10-12 02:20:46 (14398): Setting Chipset Options for VM.
2025-10-12 02:20:46 (14398): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 02:20:46 (14398): Setting Boot Options for VM.
2025-10-12 02:20:47 (14398): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 02:20:47 (14398): Enabling VM Network Access.
2025-10-12 02:20:47 (14398): Disabling USB Support for VM.
2025-10-12 02:20:47 (14398): Disabling COM Port Support for VM.
2025-10-12 02:20:47 (14398): Disabling LPT Port Support for VM.
2025-10-12 02:20:47 (14398): Disabling Audio Support for VM.
2025-10-12 02:20:47 (14398): Disabling Clipboard Support for VM.
2025-10-12 02:20:47 (14398): Disabling Drag and Drop Support for VM.
2025-10-12 02:20:47 (14398): Adding storage controller(s) to VM.
2025-10-12 02:20:47 (14398): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 02:20:48 (14398): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 02:20:48 (14398): forwarding host port 40117 to guest port 80
2025-10-12 02:20:49 (14398): Enabling remote desktop for VM.
2025-10-12 02:20:49 (14398): Required extension pack not installed, remote desktop not enabled.
2025-10-12 02:20:49 (14398): Enabling shared directory for VM.
2025-10-12 02:20:49 (14398): Starting VM using VBoxManage interface. (boinc_06c8d71800faf145, slot#3)
2025-10-12 02:20:51 (14398): Successfully started VM. (PID = '14915')
2025-10-12 02:20:51 (14398): Reporting VM Process ID to BOINC.
2025-10-12 02:20:51 (14398): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-12 02:20:51 (14398): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 02:20:51 (14398): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 02:20:51 (14398): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 02:20:51 (14398): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 02:20:51 (14398): Detected: Web Application Enabled (http://localhost:40117)
2025-10-12 02:20:51 (14398): Preference change detected
2025-10-12 02:20:51 (14398): Setting CPU throttle for VM. (90%)
2025-10-12 02:20:51 (14398): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 02:20:53 (14398): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 02:20:53 (14398): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 02:20:54 (14398): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 02:21:13 (14398): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 02:21:15 (14398): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 02:21:15 (14398): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 02:21:15 (14398): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 02:21:26 (14398): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 02:21:26 (14398): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 02:21:44 (14398): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.000403 main     Log opened 2025-10-11T18:21:23.301617000Z
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.000771 main     OS Product: Linux
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.000861 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.000928 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.000993 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.000996 main     Process ID: 1276
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.000997 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 02:21:44 (14398): Guest Log: 00:00:00.003103 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 02:21:45 (14398): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 02:21:45 (14398): Guest Log: [INFO] Mounting shared directory
2025-10-12 02:21:45 (14398): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 02:22:04 (14398): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 02:22:04 (14398): Guest Log: [INFO] Detected branch: prod
2025-10-12 02:22:05 (14398): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 02:22:05 (14398): Guest Log: Copying input files
2025-10-12 02:22:07 (14398): Guest Log: Copied input files into RunAtlas.
2025-10-12 02:22:07 (14398): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 02:22:07 (14398): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 02:22:07 (14398): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 02:22:07 (14398): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 02:22:19 (14398): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 02:22:19 (14398): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 02:22:19 (14398): Guest Log: 2.6.3.0 1556 0 30064 151593 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 02:22:23 (14398): Guest Log: copied the webapp to /var/www
2025-10-12 02:22:23 (14398): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-12 02:22:23 (14398): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-12 02:22:24 (14398): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 02:22:24 (14398): Guest Log:  *** Starting ATLAS job. (PandaID=6838366013 taskID=46676269) ***
2025-10-12 04:00:12 (14398): Status Report: Elapsed Time: '6000.000000'
2025-10-12 04:00:12 (14398): Status Report: CPU Time: '16512.280000'
2025-10-12 04:21:09 (14398): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 07:14:49 (14398): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 07:14:50 (14398): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 07:15:10 (14398): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 07:15:14 (14398): Guest Log: 01:59:32.956679 timesync vgsvcTimeSyncWorker: Radical host time change: 10 449 913 000 000ns (HostNow=1 760 224 513 659 000 000 ns HostLast=1 760 214 063 746 000 000 ns)
2025-10-12 07:15:24 (14398): Guest Log: 01:59:42.962918 timesync vgsvcTimeSyncWorker: Radical guest time change: 10 467 494 563 000ns (GuestNow=1 760 224 523 708 848 000 ns GuestLast=1 760 214 056 214 285 000 ns fSetTimeLastLoop=true )
2025-10-12 08:33:16 (14398): Status Report: Elapsed Time: '12000.000000'
2025-10-12 08:33:16 (14398): Status Report: CPU Time: '37197.240000'
2025-10-12 09:15:38 (14398): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 12:08:33 (14398): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 12:08:39 (14398): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 12:08:59 (14398): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 12:09:00 (14398): Guest Log: 04:00:05.240640 timesync vgsvcTimeSyncWorker: Radical host time change: 10 404 676 000 000ns (HostNow=1 760 242 140 636 000 000 ns HostLast=1 760 231 735 960 000 000 ns)
2025-10-12 12:09:11 (14398): Guest Log: 04:00:15.247883 timesync vgsvcTimeSyncWorker: Radical guest time change: 10 404 674 625 000ns (GuestNow=1 760 242 150 652 082 000 ns GuestLast=1 760 231 745 977 457 000 ns fSetTimeLastLoop=true )
2025-10-12 13:05:34 (14398): Status Report: Elapsed Time: '18000.000000'
2025-10-12 13:05:34 (14398): Status Report: CPU Time: '57934.530000'
2025-10-12 14:44:35 (14398): Status Report: Elapsed Time: '24000.000000'
2025-10-12 14:44:35 (14398): Status Report: CPU Time: '78631.740000'
2025-10-12 15:50:28 (14398): Guest Log:  *** Job finished ***
2025-10-12 15:50:28 (14398): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:26,822 | INFO     | PID=5977 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:26,823 | INFO     | found 0 job(s) in 20 queues
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:26,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:26,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:26,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:26,823 | INFO     | [monitor] control thread has ended
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:27,817 | INFO     | all workflow threads have been joined
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:27,817 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:27,818 | INFO     | traces error code: 0
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:27,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,010 [wrapper] ==== pilot stdout END ====
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,023 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,031 [wrapper] pilotpid: 5977
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,044 [wrapper] Pilot exit status: 0
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,194 [wrapper] pandaids: 6838366013
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,243 [wrapper] cleanup supervisor_pilot  4790 5978
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,253 [wrapper] Test setup, not cleaning
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,264 [wrapper] apfmon messages muted
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,271 [wrapper] ==== wrapper stdout END ====
2025-10-12 15:50:29 (14398): Guest Log: 2025-10-12 07:50:28,282 [wrapper] ==== wrapper stderr END ====
2025-10-12 15:50:29 (14398): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 15:50:29 (14398): Guest Log:     "exeErrorCode": 0,
2025-10-12 15:50:29 (14398): Guest Log:     "exeErrorDiag": "",
2025-10-12 15:50:29 (14398): Guest Log:     "pilotErrorCode": 0,
2025-10-12 15:50:29 (14398): Guest Log:     "pilotErrorDiag": "",
2025-10-12 15:50:29 (14398): Guest Log:  *** Listing of results directory ***
2025-10-12 15:50:29 (14398): Guest Log: total 208448
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 11:21 pilot3.tar.gz
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 11:32 queuedata.json
2025-10-12 15:50:29 (14398): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 11:34 runpilot2-wrapper.sh
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas    569684 Oct 11 18:21 input.tar.gz
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 11 18:21 start_atlas.sh
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas      5972 Oct 11 18:21 init_data.xml
2025-10-12 15:50:29 (14398): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 18:21 EVNT.46676267._002285.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 11 18:22 pandaJob.out
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas    975520 Oct 11 18:25 agis_schedconf.cvmfs.json
2025-10-12 15:50:29 (14398): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 18:26 pilot3
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas 201472447 Oct 12 07:48 HITS.46676269._056931.pool.root.1
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 12 07:49 memory_monitor_summary.json
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 07:49 agis_ddmendpoints.agis.ALL.json
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas    577070 Oct 12 07:49 log.46676269._056931.job.log.tgz.1
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas        98 Oct 12 07:49 pilot_heartbeat.json
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas      7823 Oct 12 07:49 heartbeat.json
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 12 07:50 pilotlog.txt
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas   3496378 Oct 12 07:50 log.46676269._056931.job.log.1
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 07:50 output.list
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 07:50 runtime_log
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas   4096000 Oct 12 07:50 result.tar.gz
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas       668 Oct 12 07:50 W98LDm22mR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmYmRMDmXmW8um.diag
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 atlas atlas      8667 Oct 12 07:50 runtime_log.err
2025-10-12 15:50:29 (14398): Guest Log: Looking for outputfile HITS.46676269._056931.pool.root.1
2025-10-12 15:50:29 (14398): Guest Log: HITS file was successfully produced
2025-10-12 15:50:29 (14398): Guest Log: -rw-------. 1 atlas atlas 201472447 Oct 12 07:48 /home/atlas/RunAtlas/HITS.46676269._056931.pool.root.1
2025-10-12 15:50:29 (14398): Guest Log: Successfully finished the ATLAS job!
2025-10-12 15:50:29 (14398): Guest Log: Copying the results back to the shared directory!
2025-10-12 15:50:29 (14398): Guest Log:  *** Contents of shared directory: ***
2025-10-12 15:50:29 (14398): Guest Log: total 220588
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 root root 221187354 Oct 11 18:20 ATLAS.root_0
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 root root      5972 Oct 11 18:20 init_data.xml
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 root root    569684 Oct 11 18:20 input.tar.gz
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 root root   4096000 Oct 12 07:50 result.tar.gz
2025-10-12 15:50:29 (14398): Guest Log: -rw-r--r--. 1 root root     15120 Oct 11 18:20 start_atlas.sh
2025-10-12 15:50:29 (14398): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 15:50:29 (14398): VM Completion File Detected.
2025-10-12 15:50:29 (14398): Powering off VM.
2025-10-12 15:50:30 (14398): Successfully stopped VM.
2025-10-12 15:50:30 (14398): Deregistering VM. (boinc_06c8d71800faf145, slot#3)
2025-10-12 15:50:30 (14398): Removing network bandwidth throttle group from VM.
2025-10-12 15:50:30 (14398): Removing VM from VirtualBox.
2025-10-12 15:50:35 (14398): called boinc_finish(0)

</stderr_txt>
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