Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:34:21 (3384985): wrapper (7.7.26015): starting
03:34:21 (3384985): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 03:34:21] Arguments: --nthreads 4
[2025-10-12 03:34:21] Threads: 4
[2025-10-12 03:34:21] Checking for CVMFS
[2025-10-12 03:34:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 03:34:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 03:34:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 03:34:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 03:34:22] 2.9.2.0 2165438 3503 96448 151602 3 57 31815121 36864000 0 130560 0 3166641 99.991 121740 984 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 03:34:22] CVMFS is ok
[2025-10-12 03:34:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 03:34:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 03:34:22] Further information can be found at the LHC@home message board.
[2025-10-12 03:34:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 03:34:22] Checking for apptainer binary...
[2025-10-12 03:34:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 03:34:22] Running /usr/bin/apptainer --version
[2025-10-12 03:34:22] apptainer version 1.4.1-1.1
[2025-10-12 03:34:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 03:34:22] thA305a
[2025-10-12 03:34:22] apptainer works
[2025-10-12 03:34:22] Set ATHENA_PROC_NUMBER=4
[2025-10-12 03:34:22] Set ATHENA_CORE_NUMBER=4
[2025-10-12 03:34:22] Starting ATLAS job with PandaID=6838292488
[2025-10-12 03:34:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:39:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:39:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:39:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:39:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:39:37] 
[2025-10-12 03:39:37] 2025-10-12 01:39:25,831 | INFO     | ***************************************
[2025-10-12 03:39:37] 2025-10-12 01:39:26,335 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 03:39:37] 2025-10-12 01:39:26,353 | INFO     | sufficient remaining disk space (328146616320 B)
[2025-10-12 03:39:37] 2025-10-12 01:39:26,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:39:37] 2025-10-12 01:39:26,353 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:39:37] 2025-10-12 01:39:26,353 | INFO     | update_server=False
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:39:37] 2025-10-12 01:39:26,354 | INFO     | aborting loop
[2025-10-12 03:39:37] 2025-10-12 01:39:26,515 | INFO     | all data control threads have been joined
[2025-10-12 03:39:37] 2025-10-12 01:39:26,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:39:37] 2025-10-12 01:39:27,224 | INFO     | all payload control threads have been joined
[2025-10-12 03:39:37] 2025-10-12 01:39:27,359 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,360 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,360 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,521 | INFO     | [data] control thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,627 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:39:37] 2025-10-12 01:39:27,645 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,681 | INFO     | all job control threads have been joined
[2025-10-12 03:39:37] 2025-10-12 01:39:27,725 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,770 | INFO     | [job] validate thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,891 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:27,963 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:28,229 | INFO     | [payload] control thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:28,256 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:28,447 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:28,687 | INFO     | [job] control thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:29,633 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:30,407 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:39:37] 2025-10-12 01:39:30,821 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:39:37] 2025-10-12 01:39:32,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948096698176)>', '<ExcThread(monitor, started 139946945935104)>']
[2025-10-12 03:39:37] 2025-10-12 01:39:32,387 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:39:37] 2025-10-12 01:39:32,387 | INFO     | [monitor] control thread has ended
[2025-10-12 03:39:37] 2025-10-12 01:39:37,335 | INFO     | all workflow threads have been joined
[2025-10-12 03:39:37] 2025-10-12 01:39:37,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:39:37] 2025-10-12 01:39:37,336 | INFO     | traces error code: 0
[2025-10-12 03:39:37] 2025-10-12 01:39:37,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:39:37] 2025-10-12 01:39:37,415 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:39:37] 2025-10-12 01:39:37,419 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:39:37] 2025-10-12 01:39:37,423 [wrapper] pilotpid: 3388773
[2025-10-12 03:39:37] 2025-10-12 01:39:37,428 [wrapper] Pilot exit status: 0
[2025-10-12 03:39:37] 2025-10-12 01:39:37,439 [wrapper] pandaids: 6838292488
[2025-10-12 03:39:37] 2025-10-12 01:39:37,461 [wrapper] cleanup supervisor_pilot 3388779 3388774
[2025-10-12 03:39:37] 2025-10-12 01:39:37,465 [wrapper] Test setup, not cleaning
[2025-10-12 03:39:37] 2025-10-12 01:39:37,468 [wrapper] apfmon messages muted
[2025-10-12 03:39:37] 2025-10-12 01:39:37,472 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:39:37] 2025-10-12 01:39:37,476 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:39:37]  *** Error codes and diagnostics ***
[2025-10-12 03:39:37]     "exeErrorCode": 0,
[2025-10-12 03:39:37]     "exeErrorDiag": "",
[2025-10-12 03:39:37]     "pilotErrorCode": 1305,
[2025-10-12 03:39:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2025-10-12 03:39:37]  *** Listing of results directory ***
[2025-10-12 03:39:37] total 219284
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc    557409 Oct 11 11:03 pilot3.tar.gz
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc      5112 Oct 11 11:08 queuedata.json
[2025-10-12 03:39:37] -rwx------ 1 boinc boinc     36292 Oct 11 11:10 runpilot2-wrapper.sh
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc       100 Oct 12 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:39:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 03:34 run_atlas
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc       105 Oct 12 03:34 job.xml
[2025-10-12 03:39:37] -rw-r--r-- 2 boinc boinc 220327997 Oct 12 03:34 EVNT.46676267._002202.pool.root.1
[2025-10-12 03:39:37] drwxrwx--x 2 boinc boinc      4096 Oct 12 03:34 shared
[2025-10-12 03:39:37] -rw-r--r-- 2 boinc boinc    569682 Oct 12 03:34 input.tar.gz
[2025-10-12 03:39:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 03:34 start_atlas.sh
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 03:34 boinc_setup_complete
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc      6377 Oct 12 03:34 init_data.xml
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 03:34 boinc_lockfile
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc      2550 Oct 12 03:34 pandaJob.out
[2025-10-12 03:39:37] -rw------- 1 boinc boinc    975496 Oct 12 03:34 agis_schedconf.cvmfs.json
[2025-10-12 03:39:37] -rw------- 1 boinc boinc   1560580 Oct 12 03:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:39:37] drwx------ 5 boinc boinc      4096 Oct 12 03:34 pilot3
[2025-10-12 03:39:37] -rw------- 1 boinc boinc      1006 Oct 12 03:37 memory_monitor_summary.json
[2025-10-12 03:39:37] -rw------- 1 boinc boinc     60015 Oct 12 03:37 log.46676269._054927.job.log.tgz.1
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc       525 Oct 12 03:37 boinc_task_state.xml
[2025-10-12 03:39:37] -rw------- 1 boinc boinc        95 Oct 12 03:38 pilot_heartbeat.json
[2025-10-12 03:39:37] -rw------- 1 boinc boinc      8430 Oct 12 03:39 heartbeat.json
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc        23 Oct 12 03:39 wrapper_checkpoint.txt
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc      8192 Oct 12 03:39 boinc_mmap_file
[2025-10-12 03:39:37] -rw------- 1 boinc boinc      4556 Oct 12 03:39 pilotlog.txt
[2025-10-12 03:39:37] -rw------- 1 boinc boinc    100490 Oct 12 03:39 log.46676269._054927.job.log.1
[2025-10-12 03:39:37] -rw------- 1 boinc boinc       188 Oct 12 03:39 output.list
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc       620 Oct 12 03:39 runtime_log
[2025-10-12 03:39:37] -rw------- 1 boinc boinc    184320 Oct 12 03:39 result.tar.gz
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc      8629 Oct 12 03:39 runtime_log.err
[2025-10-12 03:39:37] -rw------- 1 boinc boinc       650 Oct 12 03:39 KUIMDmAnkR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCzfNDmPRa7Im.diag
[2025-10-12 03:39:37] -rw-r--r-- 1 boinc boinc      8252 Oct 12 03:39 stderr.txt
[2025-10-12 03:39:37] No HITS result produced
[2025-10-12 03:39:37]  *** Contents of shared directory: ***
[2025-10-12 03:39:37] total 215928
[2025-10-12 03:39:37] -rw-r--r-- 2 boinc boinc 220327997 Oct 12 03:34 ATLAS.root_0
[2025-10-12 03:39:37] -rw-r--r-- 2 boinc boinc    569682 Oct 12 03:34 input.tar.gz
[2025-10-12 03:39:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 03:34 start_atlas.sh
[2025-10-12 03:39:37] -rw------- 1 boinc boinc    184320 Oct 12 03:39 result.tar.gz
03:39:39 (3384985): run_atlas exited; CPU time 30.798272
03:39:39 (3384985): called boinc_finish(0)

</stderr_txt>
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