Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:26:15 (688476): wrapper (7.7.26015): starting
13:26:15 (688476): wrapper: running run_atlas (--nthreads 10)
[2025-10-11 13:26:15] Arguments: --nthreads 10
[2025-10-11 13:26:15] Threads: 10
[2025-10-11 13:26:15] Checking for CVMFS
[2025-10-11 13:26:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 13:26:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 13:26:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 13:26:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 13:26:17] 2.13.2.0 7513 76439 123516 151591 2 485 37712294 40960001 36263 16776704 0 456504786 99.754 288220779 46119 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 13:26:17] CVMFS is ok
[2025-10-11 13:26:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 13:26:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 13:26:17] Further information can be found at the LHC@home message board.
[2025-10-11 13:26:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 13:26:17] Checking for apptainer binary...
[2025-10-11 13:26:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 13:26:17] Running /usr/bin/apptainer --version
[2025-10-11 13:26:18] apptainer version 1.4.3-1.el9
[2025-10-11 13:26:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 13:26:18] c-208-40.aglt2.org
[2025-10-11 13:26:18] apptainer works
[2025-10-11 13:26:19] Set ATHENA_PROC_NUMBER=10
[2025-10-11 13:26:19] Set ATHENA_CORE_NUMBER=10
[2025-10-11 13:26:19] Starting ATLAS job with PandaID=6838199948
[2025-10-11 13:26:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 14:57:07]  *** The last 200 lines of the pilot log: ***
[2025-10-11 14:57:07]  status_code=0
[2025-10-11 14:57:07]  storage_token=
[2025-10-11 14:57:07]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6838199948/log.46676269._053699.job.log.tgz.1
[2025-10-11 14:57:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/42/log.46676269._053699.job.log.tgz.1
[2025-10-11 14:57:07]  workdir=None
[2025-10-11 14:57:07] ]
[2025-10-11 14:57:07] 2025-10-11 18:56:12,209 | INFO     | transferring file log.46676269._053699.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6838199948/log.46676269._053699.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 14:57:07] 2025-10-11 18:56:12,209 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6838199948/log.46676269._053699.job.log.tgz.1 /tmp/boinchome/slots/2/log.46676269._053699.job
[2025-10-11 14:57:07] 2025-10-11 18:56:12,234 | INFO     | adding to output.list: log.46676269._053699.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/42/log.46676269._053699.job.log.tg
[2025-10-11 14:57:07] 2025-10-11 18:56:12,243 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 14:57:07] 2025-10-11 18:56:12,243 | INFO     | summary of transferred files:
[2025-10-11 14:57:07] 2025-10-11 18:56:12,243 | INFO     |  -- lfn=log.46676269._053699.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 14:57:07] 2025-10-11 18:56:12,244 | INFO     | stage-out finished correctly
[2025-10-11 14:57:07] 2025-10-11 18:56:12,295 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 14:57:07] 2025-10-11 18:56:12,392 | INFO     | job 6838199948 has state=finished
[2025-10-11 14:57:07] 2025-10-11 18:56:12,392 | INFO     | preparing for final server update for job 6838199948 in state='finished'
[2025-10-11 14:57:07] 2025-10-11 18:56:12,392 | INFO     | this job has now completed (state=finished)
[2025-10-11 14:57:07] 2025-10-11 18:56:12,392 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 14:57:07] 2025-10-11 18:56:12,393 | INFO     | log transfer has been attempted: DONE
[2025-10-11 14:57:07] 2025-10-11 18:56:12,393 | INFO     | job 6838199948 has finished - writing final server update
[2025-10-11 14:57:07] 2025-10-11 18:56:12,393 | INFO     | total number of processed events: 400 (read)
[2025-10-11 14:57:07] 2025-10-11 18:56:12,393 | INFO     | executing command: lscpu
[2025-10-11 14:57:07] 2025-10-11 18:56:12,447 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 14:57:07] 2025-10-11 18:56:12,796 | INFO     | monitor loop #355: job 0:6838199948 is in state 'finished'
[2025-10-11 14:57:07] 2025-10-11 18:56:12,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:57:07] 2025-10-11 18:56:13,284 | INFO     | time since job start (5315s) is within the limit (172800.0s)
[2025-10-11 14:57:07] 2025-10-11 18:56:15,290 | INFO     | time since job start (5317s) is within the limit (172800.0s)
[2025-10-11 14:57:07] 2025-10-11 18:56:15,306 | INFO     | monitor loop #356: job 0:6838199948 is in state 'finished'
[2025-10-11 14:57:07] 2025-10-11 18:56:15,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:57:07] 2025-10-11 18:56:17,296 | INFO     | time since job start (5319s) is within the limit (172800.0s)
[2025-10-11 14:57:07] 2025-10-11 18:56:17,811 | INFO     | monitor loop #357: job 0:6838199948 is in state 'finished'
[2025-10-11 14:57:07] 2025-10-11 18:56:17,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:57:07] 2025-10-11 18:56:18,834 | INFO     | PID=694449 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 14:57:07] 2025-10-11 18:56:18,834 | INFO     | .. there are 33 such processes running
[2025-10-11 14:57:07] 2025-10-11 18:56:19,836 | INFO     | time since job start (5321s) is within the limit (172800.0s)
[2025-10-11 14:57:07] 2025-10-11 18:56:19,842 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 14:57:07] 2025-10-11 18:56:19,847 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.990085937502
[2025-10-11 14:57:07] 2025-10-11 18:56:19,860 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838199948/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:57:07] 2025-10-11 18:56:19,861 | INFO     | extracted standard info from prmon json
[2025-10-11 14:57:07] 2025-10-11 18:56:19,861 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 14:57:07] 2025-10-11 18:56:19,861 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 14:57:07] 2025-10-11 18:56:19,861 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 14:57:07] 2025-10-11 18:56:19,861 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 14:57:07] 2025-10-11 18:56:19,862 | INFO     | fitting pss+swap vs Time
[2025-10-11 14:57:07] 2025-10-11 18:56:19,862 | INFO     | sum of square deviations: 147116740.21794847
[2025-10-11 14:57:07] 2025-10-11 18:56:19,862 | INFO     | sum of deviations: 1818779505.871795
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | mean x: 1760206453.628205
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | mean y: 2577082.512820513
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | -- intersect: -21758559136.380047
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | intersect: -21758559136.380047
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | chi2: 0.1688121266909556
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | -- intersect: -21758559136.380047
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | current memory leak: 12.36 B/s (using 78 data points, chi2=0.17)
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | could have reported an average CPU frequency of 3797 MHz (6 samples)
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | ..............................
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . Timing measurements:
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . get job = 0 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . initial setup = 8 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . payload setup = 49 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . stage-in = 0 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . payload execution = 5193 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . stage-out = 1 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | . log creation = 0 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,863 | INFO     | ..............................
[2025-10-11 14:57:07] 2025-10-11 18:56:19,921 | INFO     | 
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | job summary report
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | --------------------------------------------------
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | PanDA job id: 6838199948
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | task id: 46676269
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | errors: (none)
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | pilot state: finished 
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | transexitcode: 0
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | exeerrorcode: 0
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | exeerrordiag: 
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | exitcode: 0
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | exitmsg: OK
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | cpuconsumptiontime: 23592 s
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | nevents: 400
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | neventsw: 0
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | pid: 704842
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | pgrp: 704842
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | corecount: 10
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | event service: False
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | sizes: {0: 2348630, 1: 2348885, 2: 2348885, 13: 2348913, 24: 2348969, 34: 2349415, 5246: 2375900, 5247: 2375899, 5248: 2385009, 5256: 2385147}
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | --------------------------------------------------
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | 
[2025-10-11 14:57:07] 2025-10-11 18:56:19,922 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 14:57:07] 2025-10-11 18:56:19,960 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,960 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | job 6838199948 has completed (purged errors)
[2025-10-11 14:57:07] 2025-10-11 18:56:19,961 | INFO     | overall cleanup function is called
[2025-10-11 14:57:07] 2025-10-11 18:56:20,968 | INFO     | --- collectZombieJob: --- 10, [704842]
[2025-10-11 14:57:07] 2025-10-11 18:56:20,968 | INFO     | zombie collector waiting for pid 704842
[2025-10-11 14:57:07] 2025-10-11 18:56:20,968 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 14:57:07] 2025-10-11 18:56:20,968 | INFO     | collected zombie processes
[2025-10-11 14:57:07] 2025-10-11 18:56:20,968 | INFO     | will attempt to kill all subprocesses of pid=704842
[2025-10-11 14:57:07] 2025-10-11 18:56:21,393 | INFO     | process IDs to be killed: [704842] (in reverse order)
[2025-10-11 14:57:07] 2025-10-11 18:56:21,535 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 14:57:07] 2025-10-11 18:56:21,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 14:57:07] 2025-10-11 18:56:21,595 | INFO     | did not find any defunct processes belonging to 704842
[2025-10-11 14:57:07] 2025-10-11 18:56:21,632 | INFO     | did not find any defunct processes belonging to 704842
[2025-10-11 14:57:07] 2025-10-11 18:56:21,632 | INFO     | ready for new job
[2025-10-11 14:57:07] 2025-10-11 18:56:21,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 14:57:07] 2025-10-11 18:56:21,633 | INFO     | ***************************************
[2025-10-11 14:57:07] 2025-10-11 18:56:21,634 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 14:57:07] 2025-10-11 18:56:21,634 | INFO     | ***************************************
[2025-10-11 14:57:07] 2025-10-11 18:56:21,634 | INFO     | 
[2025-10-11 14:57:07] 2025-10-11 18:56:21,646 | INFO     | architecture information:
[2025-10-11 14:57:07] 2025-10-11 18:56:21,646 | INFO     | executing command: cat /etc/os-release
[2025-10-11 14:57:07] 2025-10-11 18:56:21,684 | INFO     | cat /etc/os-release:
[2025-10-11 14:57:07] NAME="CentOS Linux"
[2025-10-11 14:57:07] VERSION="7 (Core)"
[2025-10-11 14:57:07] ID="centos"
[2025-10-11 14:57:07] ID_LIKE="rhel fedora"
[2025-10-11 14:57:07] VERSION_ID="7"
[2025-10-11 14:57:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 14:57:07] ANSI_COLOR="0;31"
[2025-10-11 14:57:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 14:57:07] HOME_URL="https://www.centos.org/"
[2025-10-11 14:57:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 14:57:07] 
[2025-10-11 14:57:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 14:57:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 14:57:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 14:57:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 14:57:07] 
[2025-10-11 14:57:07] 2025-10-11 18:56:21,684 | INFO     | ***************************************
[2025-10-11 14:57:07] 2025-10-11 18:56:22,188 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 14:57:07] 2025-10-11 18:56:22,207 | INFO     | sufficient remaining disk space (169936420864 B)
[2025-10-11 14:57:07] 2025-10-11 18:56:22,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 14:57:07] 2025-10-11 18:56:22,208 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 14:57:07] 2025-10-11 18:56:22,208 | INFO     | update_server=False
[2025-10-11 14:57:07] 2025-10-11 18:56:22,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 14:57:07] 2025-10-11 18:56:22,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:57:07] 2025-10-11 18:56:22,208 | INFO     | aborting loop
[2025-10-11 14:57:07] 2025-10-11 18:56:22,472 | INFO     | all data control threads have been joined
[2025-10-11 14:57:07] 2025-10-11 18:56:22,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 14:57:07] 2025-10-11 18:56:22,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 14:57:07] 2025-10-11 18:56:23,213 | INFO     | [job] retrieve thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:23,214 | INFO     | [job] job monitor thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:23,216 | INFO     | [job] validate thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:23,308 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:23,356 | INFO     | all payload control threads have been joined
[2025-10-11 14:57:07] 2025-10-11 18:56:23,477 | INFO     | [data] control thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:23,661 | INFO     | all job control threads have been joined
[2025-10-11 14:57:07] 2025-10-11 18:56:24,255 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,261 | INFO     | [payload] failed_post thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,333 | INFO     | [payload] validate_post thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,363 | INFO     | [payload] control thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,578 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,623 | INFO     | [data] copytool_in thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,671 | INFO     | [job] control thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,820 | INFO     | [data] copytool_out thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:24,937 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:57:07] 2025-10-11 18:56:25,943 | INFO     | [job] queue monitor thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:26,914 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:32,398 | INFO     | job.realtimelogging is not enabled
[2025-10-11 14:57:07] 2025-10-11 18:56:33,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 14:57:07] 2025-10-11 18:56:47,117 | INFO     | [monitor] cgroup control has ended
[2025-10-11 14:57:07] 2025-10-11 18:56:47,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140078703429440)>', '<ExcThread(monitor, started 140078076655360)>']
[2025-10-11 14:57:07] 2025-10-11 18:56:53,016 | INFO     | all workflow threads have been joined
[2025-10-11 14:57:07] 2025-10-11 18:56:53,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 14:57:07] 2025-10-11 18:56:53,019 | INFO     | traces error code: 0
[2025-10-11 14:57:07] 2025-10-11 18:56:53,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 14:57:07] 2025-10-11 18:56:53,384 | INFO     | PID=694449 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 14:57:07] 2025-10-11 18:56:53,385 | INFO     | .. there are 33 such processes running
[2025-10-11 14:57:07] 2025-10-11 18:56:53,385 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 14:57:07] 2025-10-11 18:56:53,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 14:57:07] 2025-10-11 18:56:53,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 14:57:07] 2025-10-11 18:56:53,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 14:57:07] 2025-10-11 18:56:53,385 | INFO     | [monitor] control thread has ended
[2025-10-11 14:57:07] 2025-10-11 18:56:53,619 [wrapper] ==== pilot stdout END ====
[2025-10-11 14:57:07] 2025-10-11 18:56:53,622 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 14:57:07] 2025-10-11 18:56:53,625 [wrapper] pilotpid: 694449
[2025-10-11 14:57:07] 2025-10-11 18:56:53,628 [wrapper] Pilot exit status: 0
[2025-10-11 14:57:07] 2025-10-11 18:56:53,646 [wrapper] pandaids: 6838199948
[2025-10-11 14:57:07] 2025-10-11 18:56:53,747 [wrapper] cleanup supervisor_pilot 1011510 694451
[2025-10-11 14:57:07] 2025-10-11 18:56:53,755 [wrapper] Test setup, not cleaning
[2025-10-11 14:57:07] 2025-10-11 18:56:53,759 [wrapper] apfmon messages muted
[2025-10-11 14:57:07] 2025-10-11 18:56:53,762 [wrapper] ==== wrapper stdout END ====
[2025-10-11 14:57:07] 2025-10-11 18:56:53,764 [wrapper] ==== wrapper stderr END ====
[2025-10-11 14:57:07]  *** Error codes and diagnostics ***
[2025-10-11 14:57:07]     "exeErrorCode": 0,
[2025-10-11 14:57:07]     "exeErrorDiag": "",
[2025-10-11 14:57:07]     "pilotErrorCode": 0,
[2025-10-11 14:57:07]     "pilotErrorDiag": "",
[2025-10-11 14:57:07]  *** Listing of results directory ***
[2025-10-11 14:57:07] total 413872
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 03:43 queuedata.json
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 03:43 pilot3.tar.gz
[2025-10-11 14:57:07] -rwx------. 1 boincer umatlas     36292 Oct 11 03:44 runpilot2-wrapper.sh
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas       100 Oct 11 13:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 14:57:07] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 13:26 run_atlas
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas       105 Oct 11 13:26 job.xml
[2025-10-11 14:57:07] -rw-r--r--. 2 boincer umatlas 222060753 Oct 11 13:26 EVNT.46676267._002155.pool.root.1
[2025-10-11 14:57:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:26 start_atlas.sh
[2025-10-11 14:57:07] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 13:26 shared
[2025-10-11 14:57:07] -rw-r--r--. 2 boincer umatlas    569684 Oct 11 13:26 input.tar.gz
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas         0 Oct 11 13:26 boinc_lockfile
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 13:26 pandaJob.out
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas    975520 Oct 11 13:27 agis_schedconf.cvmfs.json
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas   1560580 Oct 11 13:27 agis_ddmendpoints.agis.ALL.json
[2025-10-11 14:57:07] drwx------. 5 boincer umatlas      4096 Oct 11 13:27 pilot3
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas      7174 Oct 11 14:46 init_data.xml
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas 195688678 Oct 11 14:55 HITS.46676269._053699.pool.root.1
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas       530 Oct 11 14:55 boinc_task_state.xml
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas      1046 Oct 11 14:56 memory_monitor_summary.json
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas        95 Oct 11 14:56 pilot_heartbeat.json
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas    362565 Oct 11 14:56 log.46676269._053699.job.log.tgz.1
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas      7808 Oct 11 14:56 heartbeat.json
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas       822 Oct 11 14:56 pilotlog.txt
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas    714019 Oct 11 14:56 log.46676269._053699.job.log.1
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas       357 Oct 11 14:56 output.list
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas       620 Oct 11 14:56 runtime_log
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas   1095680 Oct 11 14:56 result.tar.gz
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas      8705 Oct 11 14:56 runtime_log.err
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas       657 Oct 11 14:56 rGeKDmCSjR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3TRMDmYvJLTo.diag
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas        27 Oct 11 14:57 wrapper_checkpoint.txt
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 14:57 boinc_mmap_file
[2025-10-11 14:57:07] -rw-r--r--. 1 boincer umatlas     22203 Oct 11 14:57 stderr.txt
[2025-10-11 14:57:07] HITS file was successfully produced:
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas 195688678 Oct 11 14:55 shared/HITS.pool.root.1
[2025-10-11 14:57:07]  *** Contents of shared directory: ***
[2025-10-11 14:57:07] total 409616
[2025-10-11 14:57:07] -rw-r--r--. 2 boincer umatlas 222060753 Oct 11 13:26 ATLAS.root_0
[2025-10-11 14:57:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:26 start_atlas.sh
[2025-10-11 14:57:07] -rw-r--r--. 2 boincer umatlas    569684 Oct 11 13:26 input.tar.gz
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas 195688678 Oct 11 14:55 HITS.pool.root.1
[2025-10-11 14:57:07] -rw-------. 1 boincer umatlas   1095680 Oct 11 14:56 result.tar.gz
14:57:08 (688476): run_atlas exited; CPU time 23746.508954
14:57:08 (688476): called boinc_finish(0)

</stderr_txt>
]]>

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