Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:21:47 (3934196): wrapper (7.7.26015): starting
13:21:47 (3934196): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 13:21:47] Arguments: --nthreads 8
[2025-10-11 13:21:47] Threads: 8
[2025-10-11 13:21:47] Checking for CVMFS
[2025-10-11 13:21:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 13:21:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 13:21:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 13:21:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 13:21:49] 2.13.2.0 126724 123895 245664 151591 1 158 30212541 32935936 33051 16776704 1 286283635 99.670 263910740 20757 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 13:21:49] CVMFS is ok
[2025-10-11 13:21:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 13:21:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 13:21:49] Further information can be found at the LHC@home message board.
[2025-10-11 13:21:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 13:21:49] Checking for apptainer binary...
[2025-10-11 13:21:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 13:21:49] Running /usr/bin/apptainer --version
[2025-10-11 13:21:49] apptainer version 1.4.3-1.el9
[2025-10-11 13:21:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 13:21:49] c6-12-27-3.aglt2.org
[2025-10-11 13:21:49] apptainer works
[2025-10-11 13:21:49] Set ATHENA_PROC_NUMBER=8
[2025-10-11 13:21:49] Set ATHENA_CORE_NUMBER=8
[2025-10-11 13:21:50] Starting ATLAS job with PandaID=6838200318
[2025-10-11 13:21:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:40:06 (3934196): BOINC client no longer exists - exiting
16:40:06 (3934196): timer handler: client dead, exiting
16:49:35 (403496): wrapper (7.7.26015): starting
16:49:35 (403496): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 16:49:35] Arguments: --nthreads 8
[2025-10-11 16:49:35] Threads: 8
[2025-10-11 16:49:35] This job has been restarted, cleaning up previous attempt
[2025-10-11 16:49:35] Checking for CVMFS
[2025-10-11 16:49:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:49:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:49:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:49:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:49:36] 2.13.2.0 126724 124103 259184 151595 2 331 30901162 32935936 28668 16776704 1 286974818 99.671 264091970 20755 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 16:49:36] CVMFS is ok
[2025-10-11 16:49:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:49:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:49:36] Further information can be found at the LHC@home message board.
[2025-10-11 16:49:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:49:36] Checking for apptainer binary...
[2025-10-11 16:49:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:49:36] Running /usr/bin/apptainer --version
[2025-10-11 16:49:36] apptainer version 1.4.3-1.el9
[2025-10-11 16:49:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:49:36] c6-12-27-3.aglt2.org
[2025-10-11 16:49:36] apptainer works
[2025-10-11 16:49:36] Set ATHENA_PROC_NUMBER=8
[2025-10-11 16:49:36] Set ATHENA_CORE_NUMBER=8
[2025-10-11 16:49:36] Starting ATLAS job with PandaID=6838200318
[2025-10-11 16:49:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 21:51:26]  *** The last 200 lines of the pilot log: ***
[2025-10-11 21:51:26] 2025-10-12 01:50:25,708 | INFO     | time since job start (18039s) is within the limit (172800.0s)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,032 | INFO     | monitor loop #1021: job 0:6838200318 is in state 'finished'
[2025-10-11 21:51:26] 2025-10-12 01:50:26,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,590 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 21:51:26] 2025-10-12 01:50:26,603 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2617.955572916667
[2025-10-11 21:51:26] 2025-10-12 01:50:26,621 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838200318/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,622 | INFO     | extracted standard info from prmon json
[2025-10-11 21:51:26] 2025-10-12 01:50:26,622 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 21:51:26] 2025-10-12 01:50:26,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 21:51:26] 2025-10-12 01:50:26,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 21:51:26] 2025-10-12 01:50:26,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 21:51:26] 2025-10-12 01:50:26,630 | INFO     | fitting pss+swap vs Time
[2025-10-11 21:51:26] 2025-10-12 01:50:26,631 | INFO     | sum of square deviations: 7960416504.461007
[2025-10-11 21:51:26] 2025-10-12 01:50:26,633 | INFO     | sum of deviations: 66594005470.02037
[2025-10-11 21:51:26] 2025-10-12 01:50:26,633 | INFO     | mean x: 1760224782.5661018
[2025-10-11 21:51:26] 2025-10-12 01:50:26,634 | INFO     | mean y: 2125926.9220338985
[2025-10-11 21:51:26] 2025-10-12 01:50:26,634 | INFO     | -- intersect: -14723286836.716932
[2025-10-11 21:51:26] 2025-10-12 01:50:26,634 | INFO     | intersect: -14723286836.716932
[2025-10-11 21:51:26] 2025-10-12 01:50:26,634 | INFO     | chi2: 1.4943031914335916
[2025-10-11 21:51:26] 2025-10-12 01:50:26,635 | INFO     | sum of square deviations: 7562462171.755182
[2025-10-11 21:51:26] 2025-10-12 01:50:26,637 | INFO     | sum of deviations: 62906897958.77934
[2025-10-11 21:51:26] 2025-10-12 01:50:26,638 | INFO     | mean x: 1760224630.0655172
[2025-10-11 21:51:26] 2025-10-12 01:50:26,638 | INFO     | mean y: 2124516.5379310343
[2025-10-11 21:51:26] 2025-10-12 01:50:26,638 | INFO     | -- intersect: -14639968055.061941
[2025-10-11 21:51:26] 2025-10-12 01:50:26,638 | INFO     | intersect: -14639968055.061941
[2025-10-11 21:51:26] 2025-10-12 01:50:26,639 | INFO     | chi2: 1.4935267036257136
[2025-10-11 21:51:26] 2025-10-12 01:50:26,639 | INFO     | current chi2=1.4935267036257136 (change=0.05196320347365645 %)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,639 | INFO     | right removable region: 289
[2025-10-11 21:51:26] 2025-10-12 01:50:26,640 | INFO     | sum of square deviations: 7562413920.331015
[2025-10-11 21:51:26] 2025-10-12 01:50:26,642 | INFO     | sum of deviations: 25284219688.827576
[2025-10-11 21:51:26] 2025-10-12 01:50:26,642 | INFO     | mean x: 1760224935.0758622
[2025-10-11 21:51:26] 2025-10-12 01:50:26,642 | INFO     | mean y: 2141666.1896551726
[2025-10-11 21:51:26] 2025-10-12 01:50:26,643 | INFO     | -- intersect: -5883004853.040051
[2025-10-11 21:51:26] 2025-10-12 01:50:26,643 | INFO     | intersect: -5883004853.040051
[2025-10-11 21:51:26] 2025-10-12 01:50:26,643 | INFO     | chi2: 0.12173130568302332
[2025-10-11 21:51:26] 2025-10-12 01:50:26,643 | INFO     | current chi2=0.12173130568302332 (change=91.85364078850439 %)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,644 | INFO     | sum of square deviations: 7177970477.775382
[2025-10-11 21:51:26] 2025-10-12 01:50:26,646 | INFO     | sum of deviations: 23946098516.154385
[2025-10-11 21:51:26] 2025-10-12 01:50:26,646 | INFO     | mean x: 1760225087.57193
[2025-10-11 21:51:26] 2025-10-12 01:50:26,646 | INFO     | mean y: 2142186.9192982456
[2025-10-11 21:51:26] 2025-10-12 01:50:26,647 | INFO     | -- intersect: -5870064098.703003
[2025-10-11 21:51:26] 2025-10-12 01:50:26,647 | INFO     | intersect: -5870064098.703003
[2025-10-11 21:51:26] 2025-10-12 01:50:26,647 | INFO     | chi2: 0.11699916346912809
[2025-10-11 21:51:26] 2025-10-12 01:50:26,647 | INFO     | current chi2=0.11699916346912809 (change=3.887366678064947 %)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,647 | INFO     | left removable region: 20
[2025-10-11 21:51:26] 2025-10-12 01:50:26,648 | INFO     | sum of square deviations: 6035618469.977708
[2025-10-11 21:51:26] 2025-10-12 01:50:26,650 | INFO     | sum of deviations: 23874233931.546486
[2025-10-11 21:51:26] 2025-10-12 01:50:26,650 | INFO     | mean x: 1760225209.5687733
[2025-10-11 21:51:26] 2025-10-12 01:50:26,650 | INFO     | mean y: 2139248.565055762
[2025-10-11 21:51:26] 2025-10-12 01:50:26,650 | INFO     | -- intersect: -6960532204.987829
[2025-10-11 21:51:26] 2025-10-12 01:50:26,650 | INFO     | intersect: -6960532204.987829
[2025-10-11 21:51:26] 2025-10-12 01:50:26,651 | INFO     | chi2: 0.09847809008744017
[2025-10-11 21:51:26] 2025-10-12 01:50:26,651 | INFO     | -- intersect: -6960532204.987829
[2025-10-11 21:51:26] 2025-10-12 01:50:26,651 | INFO     | current memory leak: 3.96 B/s (using 269 data points, chi2=0.10)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,652 | INFO     | could have reported an average CPU frequency of 2635 MHz (13 samples)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,652 | INFO     | ..............................
[2025-10-11 21:51:26] 2025-10-12 01:50:26,652 | INFO     | . Timing measurements:
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | . get job = 0 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | . initial setup = 1 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | . payload setup = 5 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | . stage-in = 0 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | . payload execution = 18001 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | . stage-out = 2 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | . log creation = 0 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,653 | INFO     | ..............................
[2025-10-11 21:51:26] 2025-10-12 01:50:26,855 | INFO     | 
[2025-10-11 21:51:26] 2025-10-12 01:50:26,855 | INFO     | job summary report
[2025-10-11 21:51:26] 2025-10-12 01:50:26,855 | INFO     | --------------------------------------------------
[2025-10-11 21:51:26] 2025-10-12 01:50:26,855 | INFO     | PanDA job id: 6838200318
[2025-10-11 21:51:26] 2025-10-12 01:50:26,855 | INFO     | task id: 46676269
[2025-10-11 21:51:26] 2025-10-12 01:50:26,855 | INFO     | errors: (none)
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | pilot state: finished 
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | transexitcode: 0
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | exeerrorcode: 0
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | exeerrordiag: 
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | exitcode: 0
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | exitmsg: OK
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | cpuconsumptiontime: 46244 s
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | nevents: 400
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | neventsw: 0
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | pid: 455132
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | pgrp: 455132
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | corecount: 8
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | event service: False
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 18011: 2381368, 18015: 2390550, 18025: 2390688}
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | --------------------------------------------------
[2025-10-11 21:51:26] 2025-10-12 01:50:26,856 | INFO     | 
[2025-10-11 21:51:26] 2025-10-12 01:50:26,857 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 21:51:26] 2025-10-12 01:50:27,015 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,016 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,016 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,016 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,016 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,016 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,016 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,016 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,017 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 21:51:26] 2025-10-12 01:50:27,018 | INFO     | job 6838200318 has completed (purged errors)
[2025-10-11 21:51:26] 2025-10-12 01:50:27,018 | INFO     | overall cleanup function is called
[2025-10-11 21:51:26] 2025-10-12 01:50:28,048 | INFO     | --- collectZombieJob: --- 10, [455132]
[2025-10-11 21:51:26] 2025-10-12 01:50:28,048 | INFO     | zombie collector waiting for pid 455132
[2025-10-11 21:51:26] 2025-10-12 01:50:28,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 21:51:26] 2025-10-12 01:50:28,049 | INFO     | collected zombie processes
[2025-10-11 21:51:26] 2025-10-12 01:50:28,049 | INFO     | will attempt to kill all subprocesses of pid=455132
[2025-10-11 21:51:26] 2025-10-12 01:50:28,523 | INFO     | process IDs to be killed: [455132] (in reverse order)
[2025-10-11 21:51:26] 2025-10-12 01:50:28,676 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 21:51:26] 2025-10-12 01:50:28,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 21:51:26] 2025-10-12 01:50:28,696 | INFO     | did not find any defunct processes belonging to 455132
[2025-10-11 21:51:26] 2025-10-12 01:50:28,719 | INFO     | did not find any defunct processes belonging to 455132
[2025-10-11 21:51:26] 2025-10-12 01:50:28,720 | INFO     | ready for new job
[2025-10-11 21:51:26] 2025-10-12 01:50:28,720 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 21:51:26] 2025-10-12 01:50:28,723 | INFO     | ***************************************
[2025-10-11 21:51:26] 2025-10-12 01:50:28,723 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 21:51:26] 2025-10-12 01:50:28,723 | INFO     | ***************************************
[2025-10-11 21:51:26] 2025-10-12 01:50:28,723 | INFO     | 
[2025-10-11 21:51:26] 2025-10-12 01:50:28,748 | INFO     | architecture information:
[2025-10-11 21:51:26] 2025-10-12 01:50:28,751 | INFO     | executing command: cat /etc/os-release
[2025-10-11 21:51:26] 2025-10-12 01:50:28,775 | INFO     | cat /etc/os-release:
[2025-10-11 21:51:26] NAME="CentOS Linux"
[2025-10-11 21:51:26] VERSION="7 (Core)"
[2025-10-11 21:51:26] ID="centos"
[2025-10-11 21:51:26] ID_LIKE="rhel fedora"
[2025-10-11 21:51:26] VERSION_ID="7"
[2025-10-11 21:51:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 21:51:26] ANSI_COLOR="0;31"
[2025-10-11 21:51:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 21:51:26] HOME_URL="https://www.centos.org/"
[2025-10-11 21:51:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 21:51:26] 
[2025-10-11 21:51:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 21:51:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 21:51:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 21:51:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 21:51:26] 
[2025-10-11 21:51:26] 2025-10-12 01:50:28,775 | INFO     | ***************************************
[2025-10-11 21:51:26] 2025-10-12 01:50:29,278 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 21:51:26] 2025-10-12 01:50:29,321 | INFO     | sufficient remaining disk space (93303341056 B)
[2025-10-11 21:51:26] 2025-10-12 01:50:29,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 21:51:26] 2025-10-12 01:50:29,322 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 21:51:26] 2025-10-12 01:50:29,322 | INFO     | update_server=False
[2025-10-11 21:51:26] 2025-10-12 01:50:29,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 21:51:26] 2025-10-12 01:50:29,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:51:26] 2025-10-12 01:50:29,552 | INFO     | aborting loop
[2025-10-11 21:51:26] 2025-10-12 01:50:29,851 | INFO     | all job control threads have been joined
[2025-10-11 21:51:26] 2025-10-12 01:50:29,913 | INFO     | all data control threads have been joined
[2025-10-11 21:51:26] 2025-10-12 01:50:30,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 21:51:26] 2025-10-12 01:50:30,328 | INFO     | [job] retrieve thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,348 | INFO     | [data] copytool_in thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,452 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,557 | INFO     | [job] job monitor thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,569 | INFO     | all payload control threads have been joined
[2025-10-11 21:51:26] 2025-10-12 01:50:30,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,856 | INFO     | [job] control thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,910 | INFO     | [payload] failed_post thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,919 | INFO     | [data] control thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:30,922 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:31,575 | INFO     | [payload] control thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:31,725 | INFO     | [payload] validate_post thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:31,819 | INFO     | [job] validate thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:31,836 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:31,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:51:26] 2025-10-12 01:50:32,058 | INFO     | [data] copytool_out thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:32,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 21:51:26] 2025-10-12 01:50:32,876 | INFO     | [job] queue monitor thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:36,228 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 21:51:26] 2025-10-12 01:50:59,305 | INFO     | PID=421872 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 21:51:26] 2025-10-12 01:50:59,305 | INFO     | .. there are 36 such processes running
[2025-10-11 21:51:26] 2025-10-12 01:50:59,305 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 21:51:26] 2025-10-12 01:50:59,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 21:51:26] 2025-10-12 01:50:59,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 21:51:26] 2025-10-12 01:51:19,090 | INFO     | [monitor] cgroup control has ended
[2025-10-11 21:51:26] 2025-10-12 01:51:20,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693747980096)>', '<ExcThread(monitor, started 140692995176192)>']
[2025-10-11 21:51:26] 2025-10-12 01:51:21,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 21:51:26] 2025-10-12 01:51:21,426 | INFO     | [monitor] control thread has ended
[2025-10-11 21:51:26] 2025-10-12 01:51:26,012 | INFO     | all workflow threads have been joined
[2025-10-11 21:51:26] 2025-10-12 01:51:26,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 21:51:26] 2025-10-12 01:51:26,015 | INFO     | traces error code: 0
[2025-10-11 21:51:26] 2025-10-12 01:51:26,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 21:51:26] 2025-10-12 01:51:26,249 [wrapper] ==== pilot stdout END ====
[2025-10-11 21:51:26] 2025-10-12 01:51:26,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 21:51:26] 2025-10-12 01:51:26,255 [wrapper] pilotpid: 421872
[2025-10-11 21:51:26] 2025-10-12 01:51:26,260 [wrapper] Pilot exit status: 0
[2025-10-11 21:51:26] 2025-10-12 01:51:26,272 [wrapper] pandaids: 6838200318 6838200318
[2025-10-11 21:51:26] 2025-10-12 01:51:26,361 [wrapper] cleanup supervisor_pilot 1397864 421873
[2025-10-11 21:51:26] 2025-10-12 01:51:26,367 [wrapper] Test setup, not cleaning
[2025-10-11 21:51:26] 2025-10-12 01:51:26,370 [wrapper] apfmon messages muted
[2025-10-11 21:51:26] 2025-10-12 01:51:26,372 [wrapper] ==== wrapper stdout END ====
[2025-10-11 21:51:26] 2025-10-12 01:51:26,375 [wrapper] ==== wrapper stderr END ====
[2025-10-11 21:51:26]  *** Error codes and diagnostics ***
[2025-10-11 21:51:26]     "exeErrorCode": 0,
[2025-10-11 21:51:26]     "exeErrorDiag": "",
[2025-10-11 21:51:26]     "pilotErrorCode": 0,
[2025-10-11 21:51:26]     "pilotErrorDiag": "",
[2025-10-11 21:51:26]  *** Listing of results directory ***
[2025-10-11 21:51:26] total 637836
[2025-10-11 21:51:26] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 03:53 pilot3.tar.gz
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 03:57 queuedata.json
[2025-10-11 21:51:26] -rwx------. 1 boincer umatlas     36292 Oct 11 03:58 runpilot2-wrapper.sh
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas       100 Oct 11 13:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 21:51:26] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 13:21 run_atlas
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas       105 Oct 11 13:21 job.xml
[2025-10-11 21:51:26] -rw-r--r--. 3 boincer umatlas 222680498 Oct 11 13:21 EVNT.46676267._002166.pool.root.1
[2025-10-11 21:51:26] -rw-r--r--. 3 boincer umatlas 222680498 Oct 11 13:21 ATLAS.root_0
[2025-10-11 21:51:26] -rw-r--r--. 2 boincer umatlas    569683 Oct 11 13:21 input.tar.gz
[2025-10-11 21:51:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:21 start_atlas.sh
[2025-10-11 21:51:26] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 13:21 shared
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas         0 Oct 11 13:21 boinc_lockfile
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 16:49 pandaJob.out
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas    975528 Oct 11 16:49 agis_schedconf.cvmfs.json
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas      6859 Oct 11 21:48 init_data.xml
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas 198504907 Oct 11 21:49 HITS.46676269._053984.pool.root.1
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas       532 Oct 11 21:49 boinc_task_state.xml
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas      1054 Oct 11 21:50 memory_monitor_summary.json
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas   1560580 Oct 11 21:50 agis_ddmendpoints.agis.ALL.json
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas    509971 Oct 11 21:50 log.46676269._053984.job.log.tgz.1
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas      7855 Oct 11 21:50 heartbeat.json
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas        96 Oct 11 21:50 pilot_heartbeat.json
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 21:51 boinc_mmap_file
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas        28 Oct 11 21:51 wrapper_checkpoint.txt
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas      4823 Oct 11 21:51 pilotlog.txt
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas   2169172 Oct 11 21:51 log.46676269._053984.job.log.1
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas       357 Oct 11 21:51 output.list
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas       620 Oct 11 21:51 runtime_log
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas   2703360 Oct 11 21:51 result.tar.gz
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas      8799 Oct 11 21:51 runtime_log.err
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas      1283 Oct 11 21:51 QFNKDmjfjR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmipfNDm6pVzGn.diag
[2025-10-11 21:51:26] -rw-r--r--. 1 boincer umatlas     23481 Oct 11 21:51 stderr.txt
[2025-10-11 21:51:26] HITS file was successfully produced:
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas 198504907 Oct 11 21:49 shared/HITS.pool.root.1
[2025-10-11 21:51:26]  *** Contents of shared directory: ***
[2025-10-11 21:51:26] total 414544
[2025-10-11 21:51:26] -rw-r--r--. 3 boincer umatlas 222680498 Oct 11 13:21 ATLAS.root_0
[2025-10-11 21:51:26] -rw-r--r--. 2 boincer umatlas    569683 Oct 11 13:21 input.tar.gz
[2025-10-11 21:51:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:21 start_atlas.sh
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas 198504907 Oct 11 21:49 HITS.pool.root.1
[2025-10-11 21:51:26] -rw-------. 1 boincer umatlas   2703360 Oct 11 21:51 result.tar.gz
21:51:28 (403496): run_atlas exited; CPU time 47089.598394
21:51:28 (403496): called boinc_finish(0)

</stderr_txt>
]]>

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