Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:33:17 (27066): wrapper (7.7.26015): starting
12:33:17 (27066): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 12:33:17] Arguments: --nthreads 8
[2025-10-11 12:33:17] Threads: 8
[2025-10-11 12:33:17] Checking for CVMFS
[2025-10-11 12:33:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:33:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:33:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:33:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:33:17] 2.11.4.0 5420 51669 60848 151590 2 188 10319584 18432000 1789 130560 0 45220496 99.972 2353658 38469 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 12:33:17] CVMFS is ok
[2025-10-11 12:33:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:33:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:33:17] Further information can be found at the LHC@home message board.
[2025-10-11 12:33:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:33:17] Checking for apptainer binary...
[2025-10-11 12:33:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:33:17] Running /usr/bin/apptainer --version
[2025-10-11 12:33:17] apptainer version 1.3.2-1.el7
[2025-10-11 12:33:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:33:18] c-206-22.aglt2.org
[2025-10-11 12:33:18] apptainer works
[2025-10-11 12:33:18] Set ATHENA_PROC_NUMBER=8
[2025-10-11 12:33:18] Set ATHENA_CORE_NUMBER=8
[2025-10-11 12:33:18] Starting ATLAS job with PandaID=6832761536
[2025-10-11 12:33:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 15:14:51]  *** The last 200 lines of the pilot log: ***
[2025-10-11 15:14:51] 2025-10-11 19:14:31,204 | INFO     | time since job start (9664s) is within the limit (172800.0s)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,414 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 15:14:51] 2025-10-11 19:14:31,418 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2466.8333333333335
[2025-10-11 15:14:51] 2025-10-11 19:14:31,421 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6832761536/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,421 | INFO     | extracted standard info from prmon json
[2025-10-11 15:14:51] 2025-10-11 19:14:31,421 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 15:14:51] 2025-10-11 19:14:31,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 15:14:51] 2025-10-11 19:14:31,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 15:14:51] 2025-10-11 19:14:31,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 15:14:51] 2025-10-11 19:14:31,424 | INFO     | fitting pss+swap vs Time
[2025-10-11 15:14:51] 2025-10-11 19:14:31,425 | INFO     | sum of square deviations: 1223016419.5
[2025-10-11 15:14:51] 2025-10-11 19:14:31,425 | INFO     | sum of deviations: 7825377009.000003
[2025-10-11 15:14:51] 2025-10-11 19:14:31,425 | INFO     | mean x: 1760205218.5
[2025-10-11 15:14:51] 2025-10-11 19:14:31,426 | INFO     | mean y: 2477444.924050633
[2025-10-11 15:14:51] 2025-10-11 19:14:31,426 | INFO     | -- intersect: -11260061003.744526
[2025-10-11 15:14:51] 2025-10-11 19:14:31,426 | INFO     | intersect: -11260061003.744526
[2025-10-11 15:14:51] 2025-10-11 19:14:31,426 | INFO     | chi2: 1.2186975137695466
[2025-10-11 15:14:51] 2025-10-11 19:14:31,426 | INFO     | sum of square deviations: 1110539892.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,427 | INFO     | sum of deviations: 7637958412.999999
[2025-10-11 15:14:51] 2025-10-11 19:14:31,427 | INFO     | mean x: 1760205066.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,427 | INFO     | mean y: 2477191.4444444445
[2025-10-11 15:14:51] 2025-10-11 19:14:31,427 | INFO     | -- intersect: -12103682334.484514
[2025-10-11 15:14:51] 2025-10-11 19:14:31,427 | INFO     | intersect: -12103682334.484514
[2025-10-11 15:14:51] 2025-10-11 19:14:31,428 | INFO     | chi2: 1.2196592407091988
[2025-10-11 15:14:51] 2025-10-11 19:14:31,428 | INFO     | current chi2=1.2196592407091988 (change=-0.07891432687652973 %)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,428 | INFO     | right removable region: 152
[2025-10-11 15:14:51] 2025-10-11 19:14:31,428 | INFO     | sum of square deviations: 1110539892.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,429 | INFO     | sum of deviations: -11406821392.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,429 | INFO     | mean x: 1760205371.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,429 | INFO     | mean y: 2503070.2875816994
[2025-10-11 15:14:51] 2025-10-11 19:14:31,429 | INFO     | -- intersect: 18082311301.288162
[2025-10-11 15:14:51] 2025-10-11 19:14:31,429 | INFO     | intersect: 18082311301.288162
[2025-10-11 15:14:51] 2025-10-11 19:14:31,429 | INFO     | chi2: 0.02072763743488104
[2025-10-11 15:14:51] 2025-10-11 19:14:31,430 | INFO     | current chi2=0.02072763743488104 (change=98.29919752845244 %)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,430 | INFO     | sum of square deviations: 1005179777.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,430 | INFO     | sum of deviations: -9815240563.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,431 | INFO     | mean x: 1760205523.5
[2025-10-11 15:14:51] 2025-10-11 19:14:31,431 | INFO     | mean y: 2500754.7837837837
[2025-10-11 15:14:51] 2025-10-11 19:14:31,431 | INFO     | -- intersect: 17190312376.93687
[2025-10-11 15:14:51] 2025-10-11 19:14:31,431 | INFO     | intersect: 17190312376.93687
[2025-10-11 15:14:51] 2025-10-11 19:14:31,431 | INFO     | chi2: 0.02001604736376714
[2025-10-11 15:14:51] 2025-10-11 19:14:31,431 | INFO     | current chi2=0.02001604736376714 (change=3.4330495858462746 %)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,431 | INFO     | left removable region: 20
[2025-10-11 15:14:51] 2025-10-11 19:14:31,432 | INFO     | sum of square deviations: 713140813.0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,432 | INFO     | sum of deviations: -5802424828.5
[2025-10-11 15:14:51] 2025-10-11 19:14:31,432 | INFO     | mean x: 1760205645.5
[2025-10-11 15:14:51] 2025-10-11 19:14:31,432 | INFO     | mean y: 2495184.9015151514
[2025-10-11 15:14:51] 2025-10-11 19:14:31,432 | INFO     | -- intersect: 14324296369.92929
[2025-10-11 15:14:51] 2025-10-11 19:14:31,433 | INFO     | intersect: 14324296369.92929
[2025-10-11 15:14:51] 2025-10-11 19:14:31,433 | INFO     | chi2: 0.015544800385823558
[2025-10-11 15:14:51] 2025-10-11 19:14:31,433 | INFO     | -- intersect: 14324296369.92929
[2025-10-11 15:14:51] 2025-10-11 19:14:31,433 | INFO     | current memory leak: -8.14 B/s (using 132 data points, chi2=0.02)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | could have reported an average CPU frequency of 2455 MHz (9 samples)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | ..............................
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | . Timing measurements:
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | . get job = 0 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | . initial setup = 2 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | . payload setup = 4 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | . stage-in = 0 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,434 | INFO     | . payload execution = 9631 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,435 | INFO     | . stage-out = 0 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,435 | INFO     | . log creation = 0 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,435 | INFO     | ..............................
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | 
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | job summary report
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | --------------------------------------------------
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | PanDA job id: 6832761536
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | task id: 46376905
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | errors: (none)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | pilot state: finished 
[2025-10-11 15:14:51] 2025-10-11 19:14:31,558 | INFO     | transexitcode: 0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | exeerrorcode: 0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | exeerrordiag: 
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | exitcode: 0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | exitmsg: OK
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | cpuconsumptiontime: 73377 s
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | nevents: 400
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | neventsw: 0
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | pid: 5150
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | pgrp: 5150
[2025-10-11 15:14:51] 2025-10-11 19:14:31,559 | INFO     | corecount: 8
[2025-10-11 15:14:51] 2025-10-11 19:14:31,560 | INFO     | event service: False
[2025-10-11 15:14:51] 2025-10-11 19:14:31,560 | INFO     | sizes: {0: 2348706, 1: 2348848, 4: 2349110, 11: 2349138, 9639: 2377656, 9641: 2386654, 9644: 2386838, 9650: 2387096}
[2025-10-11 15:14:51] 2025-10-11 19:14:31,560 | INFO     | --------------------------------------------------
[2025-10-11 15:14:51] 2025-10-11 19:14:31,560 | INFO     | 
[2025-10-11 15:14:51] 2025-10-11 19:14:31,560 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 15:14:51] 2025-10-11 19:14:31,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,576 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,576 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,578 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 15:14:51] 2025-10-11 19:14:31,578 | INFO     | job 6832761536 has completed (purged errors)
[2025-10-11 15:14:51] 2025-10-11 19:14:31,578 | INFO     | overall cleanup function is called
[2025-10-11 15:14:51] 2025-10-11 19:14:32,396 | INFO     | PID=30774 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 15:14:51] 2025-10-11 19:14:32,396 | INFO     | .. there are 3 such processes running
[2025-10-11 15:14:51] 2025-10-11 19:14:32,585 | INFO     | --- collectZombieJob: --- 10, [5150]
[2025-10-11 15:14:51] 2025-10-11 19:14:32,585 | INFO     | zombie collector waiting for pid 5150
[2025-10-11 15:14:51] 2025-10-11 19:14:32,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 15:14:51] 2025-10-11 19:14:32,585 | INFO     | collected zombie processes
[2025-10-11 15:14:51] 2025-10-11 19:14:32,585 | INFO     | will attempt to kill all subprocesses of pid=5150
[2025-10-11 15:14:51] 2025-10-11 19:14:32,748 | INFO     | process IDs to be killed: [5150] (in reverse order)
[2025-10-11 15:14:51] 2025-10-11 19:14:32,804 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 15:14:51] 2025-10-11 19:14:32,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 15:14:51] 2025-10-11 19:14:32,810 | INFO     | did not find any defunct processes belonging to 5150
[2025-10-11 15:14:51] 2025-10-11 19:14:32,815 | INFO     | did not find any defunct processes belonging to 5150
[2025-10-11 15:14:51] 2025-10-11 19:14:32,815 | INFO     | ready for new job
[2025-10-11 15:14:51] 2025-10-11 19:14:32,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 15:14:51] 2025-10-11 19:14:32,817 | INFO     | ***************************************
[2025-10-11 15:14:51] 2025-10-11 19:14:32,817 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-11 15:14:51] 2025-10-11 19:14:32,817 | INFO     | ***************************************
[2025-10-11 15:14:51] 2025-10-11 19:14:32,818 | INFO     | 
[2025-10-11 15:14:51] 2025-10-11 19:14:32,819 | INFO     | architecture information:
[2025-10-11 15:14:51] 2025-10-11 19:14:32,819 | INFO     | executing command: cat /etc/os-release
[2025-10-11 15:14:51] 2025-10-11 19:14:32,832 | INFO     | cat /etc/os-release:
[2025-10-11 15:14:51] NAME="CentOS Linux"
[2025-10-11 15:14:51] VERSION="7 (Core)"
[2025-10-11 15:14:51] ID="centos"
[2025-10-11 15:14:51] ID_LIKE="rhel fedora"
[2025-10-11 15:14:51] VERSION_ID="7"
[2025-10-11 15:14:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 15:14:51] ANSI_COLOR="0;31"
[2025-10-11 15:14:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 15:14:51] HOME_URL="https://www.centos.org/"
[2025-10-11 15:14:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 15:14:51] 
[2025-10-11 15:14:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 15:14:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 15:14:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 15:14:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 15:14:51] 
[2025-10-11 15:14:51] 2025-10-11 19:14:32,832 | INFO     | ***************************************
[2025-10-11 15:14:51] 2025-10-11 19:14:33,335 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 15:14:51] 2025-10-11 19:14:33,353 | INFO     | sufficient remaining disk space (28265414656 B)
[2025-10-11 15:14:51] 2025-10-11 19:14:33,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 15:14:51] 2025-10-11 19:14:33,354 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 15:14:51] 2025-10-11 19:14:33,354 | INFO     | update_server=False
[2025-10-11 15:14:51] 2025-10-11 19:14:33,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 15:14:51] 2025-10-11 19:14:33,355 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 15:14:51] 2025-10-11 19:14:33,355 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 15:14:51] 2025-10-11 19:14:33,355 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 15:14:51] 2025-10-11 19:14:33,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 15:14:51] 2025-10-11 19:14:33,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:14:51] 2025-10-11 19:14:33,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 15:14:51] 2025-10-11 19:14:33,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:14:51] 2025-10-11 19:14:33,481 | INFO     | aborting loop
[2025-10-11 15:14:51] 2025-10-11 19:14:33,518 | INFO     | all data control threads have been joined
[2025-10-11 15:14:51] 2025-10-11 19:14:33,721 | INFO     | all payload control threads have been joined
[2025-10-11 15:14:51] 2025-10-11 19:14:34,053 | INFO     | all job control threads have been joined
[2025-10-11 15:14:51] 2025-10-11 19:14:34,361 | INFO     | [job] retrieve thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,361 | INFO     | [job] queue monitor thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,486 | INFO     | [job] job monitor thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,523 | INFO     | [data] control thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,727 | INFO     | [payload] control thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,774 | INFO     | [payload] validate_post thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,842 | INFO     | [payload] failed_post thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,961 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:34,961 | INFO     | [job] validate thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:35,058 | INFO     | [job] control thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:35,302 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:35,363 | INFO     | [data] copytool_out thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:35,490 | INFO     | [data] copytool_in thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:35,520 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:36,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 15:14:51] 2025-10-11 19:14:40,561 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:43,275 | INFO     | [monitor] cgroup control has ended
[2025-10-11 15:14:51] 2025-10-11 19:14:44,399 | INFO     | job.realtimelogging is not enabled
[2025-10-11 15:14:51] 2025-10-11 19:14:45,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 15:14:51] 2025-10-11 19:14:46,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140297830061888)>', '<ExcThread(monitor, started 140297119987456)>']
[2025-10-11 15:14:51] 2025-10-11 19:14:46,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 15:14:51] 2025-10-11 19:14:46,425 | INFO     | [monitor] control thread has ended
[2025-10-11 15:14:51] 2025-10-11 19:14:51,050 | INFO     | all workflow threads have been joined
[2025-10-11 15:14:51] 2025-10-11 19:14:51,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 15:14:51] 2025-10-11 19:14:51,051 | INFO     | traces error code: 0
[2025-10-11 15:14:51] 2025-10-11 19:14:51,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 15:14:51] 2025-10-11 19:14:51,179 [wrapper] ==== pilot stdout END ====
[2025-10-11 15:14:51] 2025-10-11 19:14:51,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 15:14:51] 2025-10-11 19:14:51,184 [wrapper] pilotpid: 30774
[2025-10-11 15:14:51] 2025-10-11 19:14:51,186 [wrapper] Pilot exit status: 0
[2025-10-11 15:14:51] 2025-10-11 19:14:51,195 [wrapper] pandaids: 6832761536
[2025-10-11 15:14:51] 2025-10-11 19:14:51,232 [wrapper] cleanup supervisor_pilot  1011 30775
[2025-10-11 15:14:51] 2025-10-11 19:14:51,234 [wrapper] Test setup, not cleaning
[2025-10-11 15:14:51] 2025-10-11 19:14:51,237 [wrapper] apfmon messages muted
[2025-10-11 15:14:51] 2025-10-11 19:14:51,239 [wrapper] ==== wrapper stdout END ====
[2025-10-11 15:14:51] 2025-10-11 19:14:51,240 [wrapper] ==== wrapper stderr END ====
[2025-10-11 15:14:51]  *** Error codes and diagnostics ***
[2025-10-11 15:14:51]     "exeErrorCode": 0,
[2025-10-11 15:14:51]     "exeErrorDiag": "",
[2025-10-11 15:14:51]     "pilotErrorCode": 0,
[2025-10-11 15:14:51]     "pilotErrorDiag": "",
[2025-10-11 15:14:51]  *** Listing of results directory ***
[2025-10-11 15:14:51] total 392684
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 10:51 pilot3.tar.gz
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 11:04 queuedata.json
[2025-10-11 15:14:51] -rwx------ 1 boincer umatlas     36292 Oct  6 11:05 runpilot2-wrapper.sh
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas       100 Oct 11 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 15:14:51] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 12:33 run_atlas
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas       105 Oct 11 12:33 job.xml
[2025-10-11 15:14:51] -rw-r--r-- 2 boincer umatlas 215406871 Oct 11 12:33 EVNT.46376901._004213.pool.root.1
[2025-10-11 15:14:51] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 12:33 start_atlas.sh
[2025-10-11 15:14:51] drwxrwx--x 2 boincer umatlas      4096 Oct 11 12:33 shared
[2025-10-11 15:14:51] -rw-r--r-- 2 boincer umatlas    565603 Oct 11 12:33 input.tar.gz
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas         0 Oct 11 12:33 boinc_lockfile
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas      2521 Oct 11 12:33 pandaJob.out
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas    975512 Oct 11 12:33 agis_schedconf.cvmfs.json
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas   1560580 Oct 11 12:33 agis_ddmendpoints.agis.ALL.json
[2025-10-11 15:14:51] drwx------ 4 boincer umatlas      4096 Oct 11 12:33 pilot3
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas      5950 Oct 11 15:11 init_data.xml
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas 179284990 Oct 11 15:13 HITS.46376905._113596.pool.root.1
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas        95 Oct 11 15:13 pilot_heartbeat.json
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas       530 Oct 11 15:13 boinc_task_state.xml
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas      1051 Oct 11 15:14 memory_monitor_summary.json
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas    411241 Oct 11 15:14 log.46376905._113596.job.log.tgz.1
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 15:14 boinc_mmap_file
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas        27 Oct 11 15:14 wrapper_checkpoint.txt
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas      7854 Oct 11 15:14 heartbeat.json
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas      4624 Oct 11 15:14 pilotlog.txt
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas   1351765 Oct 11 15:14 log.46376905._113596.job.log.1
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas       357 Oct 11 15:14 output.list
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas       620 Oct 11 15:14 runtime_log
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas   1781760 Oct 11 15:14 result.tar.gz
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 15:14 runtime_log.err
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas       657 Oct 11 15:14 82LMDmYx1P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYnTNDmKxe5xn.diag
[2025-10-11 15:14:51] -rw-r--r-- 1 boincer umatlas     21080 Oct 11 15:14 stderr.txt
[2025-10-11 15:14:51] HITS file was successfully produced:
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas 179284990 Oct 11 15:13 shared/HITS.pool.root.1
[2025-10-11 15:14:51]  *** Contents of shared directory: ***
[2025-10-11 15:14:51] total 387760
[2025-10-11 15:14:51] -rw-r--r-- 2 boincer umatlas 215406871 Oct 11 12:33 ATLAS.root_0
[2025-10-11 15:14:51] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 12:33 start_atlas.sh
[2025-10-11 15:14:51] -rw-r--r-- 2 boincer umatlas    565603 Oct 11 12:33 input.tar.gz
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas 179284990 Oct 11 15:13 HITS.pool.root.1
[2025-10-11 15:14:51] -rw------- 1 boincer umatlas   1781760 Oct 11 15:14 result.tar.gz
15:14:52 (27066): run_atlas exited; CPU time 73500.692135
15:14:52 (27066): called boinc_finish(0)

</stderr_txt>
]]>

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