Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:25:22 (590489): wrapper (7.7.26015): starting
11:25:22 (590489): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 11:25:22] Arguments: --nthreads 3
[2025-10-13 11:25:22] Threads: 3
[2025-10-13 11:25:22] Checking for CVMFS
[2025-10-13 11:26:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:26:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:26:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:26:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:26:19] 2.11.5.0 590709 0 31072 151645 3 1 13617712 15728641 0 130560 0 0 0.000 1293 38 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 11:26:19] CVMFS is ok
[2025-10-13 11:26:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:26:19] Checking for apptainer binary...
[2025-10-13 11:26:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:26:19] Running /usr/bin/apptainer --version
[2025-10-13 11:26:19] apptainer version 1.3.4-1.el9
[2025-10-13 11:26:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:26:19] testio003
[2025-10-13 11:26:19] apptainer works
[2025-10-13 11:26:20] Set ATHENA_PROC_NUMBER=3
[2025-10-13 11:26:20] Set ATHENA_CORE_NUMBER=3
[2025-10-13 11:26:20] Starting ATLAS job with PandaID=6838453126
[2025-10-13 11:26:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:22:04]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:22:04] 2025-10-13 04:21:05,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,642 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 13:22:04] 2025-10-13 04:21:05,642 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3501.98125
[2025-10-13 13:22:04] 2025-10-13 04:21:05,643 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838453126/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,643 | INFO     | extracted standard info from prmon json
[2025-10-13 13:22:04] 2025-10-13 04:21:05,643 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 13:22:04] 2025-10-13 04:21:05,643 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 13:22:04] 2025-10-13 04:21:05,644 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:22:04] 2025-10-13 04:21:05,644 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | sum of square deviations: 412711572.4000008
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | sum of deviations: -9967372467.199999
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | mean x: 1760325815.6
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | mean y: 2448451.109090909
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | -- intersect: 42515971795.46392
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | intersect: 42515971795.46392
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | chi2: 2.244363777141148
[2025-10-13 13:22:04] 2025-10-13 04:21:05,645 | INFO     | sum of square deviations: 358955779.8476186
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | sum of deviations: -8372380365.161908
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | mean x: 1760325663.1047618
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | mean y: 2452978.9238095237
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | -- intersect: 41060758334.322876
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | intersect: 41060758334.322876
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | chi2: 2.246653243996478
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | current chi2=2.246653243996478 (change=-0.10200961531494762 %)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | right removable region: 104
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | sum of square deviations: 358949069.8476186
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | sum of deviations: -30957878630.057144
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | mean x: 1760325968.1047618
[2025-10-13 13:22:04] 2025-10-13 04:21:05,646 | INFO     | mean y: 2507262.9142857143
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | -- intersect: 151823370576.64215
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | intersect: 151823370576.64215
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | chi2: 0.21854697273320725
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | current chi2=0.21854697273320725 (change=90.26240866302028 %)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | sum of square deviations: 310070379.7900004
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | sum of deviations: -28356648585.35
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | mean x: 1760326120.61
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | mean y: 2499072.35
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | -- intersect: 160988366963.23715
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | intersect: 160988366963.23715
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | chi2: 0.20908935813409343
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | current chi2=0.20908935813409343 (change=4.327497416612248 %)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | left removable region: 20
[2025-10-13 13:22:04] 2025-10-13 04:21:05,647 | INFO     | sum of square deviations: 183751006.57142875
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | sum of deviations: -18840345422.999996
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | mean x: 1760326242.5714285
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | mean y: 2479914.25
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | -- intersect: 180492127759.11908
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | intersect: 180492127759.11908
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | chi2: 0.19164696088104144
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | -- intersect: 180492127759.11908
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | current memory leak: -102.53 B/s (using 84 data points, chi2=0.19)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | could have reported an average CPU frequency of 3566 MHz (7 samples)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | ..............................
[2025-10-13 13:22:04] 2025-10-13 04:21:05,648 | INFO     | . Timing measurements:
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | . get job = 0 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | . initial setup = 7 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | . payload setup = 5 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | . stage-in = 0 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | . payload execution = 6676 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | . stage-out = 0 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | . log creation = 0 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,649 | INFO     | ..............................
[2025-10-13 13:22:04] 2025-10-13 04:21:05,686 | INFO     | 
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | job summary report
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | --------------------------------------------------
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | PanDA job id: 6838453126
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | task id: 46676269
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | errors: (none)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | pilot state: finished 
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | transexitcode: 0
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | exeerrorcode: 0
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | exeerrordiag: 
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | exitcode: 0
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | exitmsg: OK
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | cpuconsumptiontime: 18848 s
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | nevents: 400
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | neventsw: 0
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | pid: 601289
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | pgrp: 601289
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | corecount: 3
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | event service: False
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 6684: 2376321, 6685: 2385375, 6783: 2385513}
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | --------------------------------------------------
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | 
[2025-10-13 13:22:04] 2025-10-13 04:21:05,687 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 13:22:04] 2025-10-13 04:21:05,698 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,698 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,698 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,698 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | job 6838453126 has completed (purged errors)
[2025-10-13 13:22:04] 2025-10-13 04:21:05,699 | INFO     | overall cleanup function is called
[2025-10-13 13:22:04] 2025-10-13 04:21:06,705 | INFO     | --- collectZombieJob: --- 10, [601289]
[2025-10-13 13:22:04] 2025-10-13 04:21:06,706 | INFO     | zombie collector waiting for pid 601289
[2025-10-13 13:22:04] 2025-10-13 04:21:06,706 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:22:04] 2025-10-13 04:21:06,706 | INFO     | collected zombie processes
[2025-10-13 13:22:04] 2025-10-13 04:21:06,706 | INFO     | will attempt to kill all subprocesses of pid=601289
[2025-10-13 13:22:04] 2025-10-13 04:21:06,743 | INFO     | process IDs to be killed: [601289] (in reverse order)
[2025-10-13 13:22:04] 2025-10-13 04:21:06,764 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:22:04] 2025-10-13 04:21:06,764 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:22:04] 2025-10-13 04:21:06,765 | INFO     | did not find any defunct processes belonging to 601289
[2025-10-13 13:22:04] 2025-10-13 04:21:06,766 | INFO     | did not find any defunct processes belonging to 601289
[2025-10-13 13:22:04] 2025-10-13 04:21:06,766 | INFO     | ready for new job
[2025-10-13 13:22:04] 2025-10-13 04:21:06,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:22:04] 2025-10-13 04:21:06,767 | INFO     | ***************************************
[2025-10-13 13:22:04] 2025-10-13 04:21:06,768 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:22:04] 2025-10-13 04:21:06,768 | INFO     | ***************************************
[2025-10-13 13:22:04] 2025-10-13 04:21:06,768 | INFO     | 
[2025-10-13 13:22:04] 2025-10-13 04:21:06,779 | INFO     | architecture information:
[2025-10-13 13:22:04] 2025-10-13 04:21:06,780 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:22:04] 2025-10-13 04:21:06,787 | INFO     | cat /etc/os-release:
[2025-10-13 13:22:04] NAME="CentOS Linux"
[2025-10-13 13:22:04] VERSION="7 (Core)"
[2025-10-13 13:22:04] ID="centos"
[2025-10-13 13:22:04] ID_LIKE="rhel fedora"
[2025-10-13 13:22:04] VERSION_ID="7"
[2025-10-13 13:22:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:22:04] ANSI_COLOR="0;31"
[2025-10-13 13:22:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:22:04] HOME_URL="https://www.centos.org/"
[2025-10-13 13:22:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:22:04] 
[2025-10-13 13:22:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:22:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:22:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:22:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:22:04] 
[2025-10-13 13:22:04] 2025-10-13 04:21:06,788 | INFO     | ***************************************
[2025-10-13 13:22:04] 2025-10-13 04:21:07,290 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 13:22:04] 2025-10-13 04:21:07,299 | INFO     | sufficient remaining disk space (40182480896 B)
[2025-10-13 13:22:04] 2025-10-13 04:21:07,299 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:22:04] 2025-10-13 04:21:07,299 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:22:04] 2025-10-13 04:21:07,299 | INFO     | update_server=False
[2025-10-13 13:22:04] 2025-10-13 04:21:07,299 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:22:04] 2025-10-13 04:21:07,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:22:04] 2025-10-13 04:21:07,320 | INFO     | all data control threads have been joined
[2025-10-13 13:22:04] 2025-10-13 04:21:07,739 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 13:22:04] 2025-10-13 04:21:07,739 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 13:22:04] 2025-10-13 04:21:07,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:22:04] 2025-10-13 04:21:07,739 | INFO     | will abort loop
[2025-10-13 13:22:04] 2025-10-13 04:21:08,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:22:04] 2025-10-13 04:21:08,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:22:04] 2025-10-13 04:21:08,303 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:08,304 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:08,325 | INFO     | [data] control thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:08,529 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:08,574 | INFO     | all payload control threads have been joined
[2025-10-13 13:22:04] 2025-10-13 04:21:08,741 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:08,811 | INFO     | all job control threads have been joined
[2025-10-13 13:22:04] 2025-10-13 04:21:08,902 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:09,223 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:09,579 | INFO     | [payload] control thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:09,657 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:09,666 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:09,673 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:09,678 | INFO     | [job] validate thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:09,816 | INFO     | [job] control thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:10,037 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:12,029 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:18,209 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:22:04] 2025-10-13 04:21:19,214 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:22:04] 2025-10-13 04:21:38,339 | INFO     | PID=594752 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 13:22:04] 2025-10-13 04:21:38,339 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:22:04] 2025-10-13 04:21:38,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:22:04] 2025-10-13 04:21:38,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:22:04] 2025-10-13 04:21:58,098 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:22:04] 2025-10-13 04:21:59,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314441078592)>', '<ExcThread(monitor, started 140313821701888)>']
[2025-10-13 13:22:04] 2025-10-13 04:22:00,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:22:04] 2025-10-13 04:22:00,412 | INFO     | [monitor] control thread has ended
[2025-10-13 13:22:04] 2025-10-13 04:22:04,549 | INFO     | all workflow threads have been joined
[2025-10-13 13:22:04] 2025-10-13 04:22:04,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:22:04] 2025-10-13 04:22:04,550 | INFO     | traces error code: 0
[2025-10-13 13:22:04] 2025-10-13 04:22:04,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:22:04] 2025-10-13 04:22:04,610 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:22:04] 2025-10-13 04:22:04,612 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:22:04] 2025-10-13 04:22:04,613 [wrapper] pilotpid: 594752
[2025-10-13 13:22:04] 2025-10-13 04:22:04,615 [wrapper] Pilot exit status: 0
[2025-10-13 13:22:04] 2025-10-13 04:22:04,621 [wrapper] pandaids: 6838453126
[2025-10-13 13:22:04] 2025-10-13 04:22:04,634 [wrapper] cleanup supervisor_pilot  615516 594753
[2025-10-13 13:22:04] 2025-10-13 04:22:04,636 [wrapper] Test setup, not cleaning
[2025-10-13 13:22:04] 2025-10-13 04:22:04,638 [wrapper] apfmon messages muted
[2025-10-13 13:22:04] 2025-10-13 04:22:04,640 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:22:04] 2025-10-13 04:22:04,641 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:22:04]  *** Error codes and diagnostics ***
[2025-10-13 13:22:04]     "exeErrorCode": 0,
[2025-10-13 13:22:04]     "exeErrorDiag": "",
[2025-10-13 13:22:04]     "pilotErrorCode": 0,
[2025-10-13 13:22:04]     "pilotErrorDiag": "",
[2025-10-13 13:22:04]  *** Listing of results directory ***
[2025-10-13 13:22:04] total 409184
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc    557409 Oct 11 23:01 pilot3.tar.gz
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc      5112 Oct 11 23:07 queuedata.json
[2025-10-13 13:22:04] -rwx------. 1 boinc boinc     36292 Oct 11 23:07 runpilot2-wrapper.sh
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc       100 Oct 13 11:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:22:04] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 11:25 run_atlas
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc       105 Oct 13 11:25 job.xml
[2025-10-13 13:22:04] -rw-r--r--. 2 boinc boinc 220028149 Oct 13 11:25 EVNT.46676267._002367.pool.root.1
[2025-10-13 13:22:04] -rw-r--r--. 2 boinc boinc     15120 Oct 13 11:25 start_atlas.sh
[2025-10-13 13:22:04] drwxrwx--x. 2 boinc boinc        68 Oct 13 11:25 shared
[2025-10-13 13:22:04] -rw-r--r--. 2 boinc boinc    569677 Oct 13 11:25 input.tar.gz
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc      9291 Oct 13 11:25 init_data.xml
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc         0 Oct 13 11:25 boinc_lockfile
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc      2550 Oct 13 11:26 pandaJob.out
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc    974373 Oct 13 11:27 agis_schedconf.cvmfs.json
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc   1560580 Oct 13 11:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:22:04] drwx------. 5 boinc boinc      4096 Oct 13 11:27 pilot3
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc 192603393 Oct 13 13:19 HITS.46676269._058990.pool.root.1
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc       529 Oct 13 13:19 boinc_task_state.xml
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc      1012 Oct 13 13:19 memory_monitor_summary.json
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc    281710 Oct 13 13:19 log.46676269._058990.job.log.tgz.1
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc      7769 Oct 13 13:21 heartbeat.json
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc        95 Oct 13 13:21 pilot_heartbeat.json
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc      8192 Oct 13 13:21 boinc_mmap_file
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc        27 Oct 13 13:21 wrapper_checkpoint.txt
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc      5005 Oct 13 13:22 pilotlog.txt
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc    961837 Oct 13 13:22 log.46676269._058990.job.log.1
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc       357 Oct 13 13:22 output.list
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc       620 Oct 13 13:22 runtime_log
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc   1259520 Oct 13 13:22 result.tar.gz
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc      8661 Oct 13 13:22 runtime_log.err
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc       643 Oct 13 13:22 CpWMDmBRpR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGdgNDmfA3qSn.diag
[2025-10-13 13:22:04] -rw-r--r--. 1 boinc boinc     20779 Oct 13 13:22 stderr.txt
[2025-10-13 13:22:04] HITS file was successfully produced:
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc 192603393 Oct 13 13:19 shared/HITS.pool.root.1
[2025-10-13 13:22:04]  *** Contents of shared directory: ***
[2025-10-13 13:22:04] total 404772
[2025-10-13 13:22:04] -rw-r--r--. 2 boinc boinc 220028149 Oct 13 11:25 ATLAS.root_0
[2025-10-13 13:22:04] -rw-r--r--. 2 boinc boinc     15120 Oct 13 11:25 start_atlas.sh
[2025-10-13 13:22:04] -rw-r--r--. 2 boinc boinc    569677 Oct 13 11:25 input.tar.gz
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc 192603393 Oct 13 13:19 HITS.pool.root.1
[2025-10-13 13:22:04] -rw-------. 1 boinc boinc   1259520 Oct 13 13:22 result.tar.gz
13:22:05 (590489): run_atlas exited; CPU time 18877.771548
13:22:05 (590489): called boinc_finish(0)

</stderr_txt>
]]>

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