Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:28:38 (370640): wrapper (7.7.26015): starting
12:28:38 (370640): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 12:28:38] Arguments: --nthreads 8
[2025-10-11 12:28:38] Threads: 8
[2025-10-11 12:28:38] Checking for CVMFS
[2025-10-11 12:28:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:28:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:28:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:28:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:28:40] 2.13.2.0 7513 76382 106824 151590 3 536 37665268 40960001 36223 16776704 0 455918075 99.753 288219335 46119 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 12:28:40] CVMFS is ok
[2025-10-11 12:28:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:28:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:28:40] Further information can be found at the LHC@home message board.
[2025-10-11 12:28:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:28:40] Checking for apptainer binary...
[2025-10-11 12:28:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:28:40] Running /usr/bin/apptainer --version
[2025-10-11 12:28:41] apptainer version 1.4.3-1.el9
[2025-10-11 12:28:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:28:41] c-208-40.aglt2.org
[2025-10-11 12:28:41] apptainer works
[2025-10-11 12:28:41] Set ATHENA_PROC_NUMBER=8
[2025-10-11 12:28:41] Set ATHENA_CORE_NUMBER=8
[2025-10-11 12:28:42] Starting ATLAS job with PandaID=6838118485
[2025-10-11 12:28:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 14:01:05]  *** The last 200 lines of the pilot log: ***
[2025-10-11 14:01:05] 2025-10-11 17:52:35,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:36,382 | INFO     | time since job start (4939s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:38,351 | INFO     | monitor loop #348: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:38,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:38,405 | INFO     | time since job start (4941s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:40,416 | INFO     | time since job start (4943s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:40,861 | INFO     | monitor loop #349: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:40,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:42,431 | INFO     | time since job start (4945s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:43,371 | INFO     | monitor loop #350: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:43,371 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:44,441 | INFO     | time since job start (4947s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:45,876 | INFO     | monitor loop #351: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:45,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:46,448 | INFO     | time since job start (4949s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:48,382 | INFO     | monitor loop #352: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:48,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:48,458 | INFO     | time since job start (4951s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:50,483 | INFO     | time since job start (4953s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:50,893 | INFO     | monitor loop #353: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:50,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:53,521 | INFO     | monitor loop #354: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:53,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:55,742 | INFO     | PID=375367 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 14:01:05] 2025-10-11 17:52:55,742 | INFO     | .. there are 37 such processes running
[2025-10-11 14:01:05] 2025-10-11 17:52:56,031 | INFO     | monitor loop #355: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:56,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:56,743 | INFO     | time since job start (4959s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:52:58,544 | INFO     | monitor loop #356: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:52:58,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:52:58,750 | INFO     | time since job start (4961s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:53:00,757 | INFO     | time since job start (4963s) is within the limit (172800.0s)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,049 | INFO     | monitor loop #357: job 0:6838118485 is in state 'finished'
[2025-10-11 14:01:05] 2025-10-11 17:53:01,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,063 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 14:01:05] 2025-10-11 17:53:01,077 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3778.0446093750006
[2025-10-11 14:01:05] 2025-10-11 17:53:01,129 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6838118485/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,130 | INFO     | extracted standard info from prmon json
[2025-10-11 14:01:05] 2025-10-11 17:53:01,130 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 14:01:05] 2025-10-11 17:53:01,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 14:01:05] 2025-10-11 17:53:01,144 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 14:01:05] 2025-10-11 17:53:01,144 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 14:01:05] 2025-10-11 17:53:01,145 | INFO     | fitting pss+swap vs Time
[2025-10-11 14:01:05] 2025-10-11 17:53:01,145 | INFO     | sum of square deviations: 115711577.31944431
[2025-10-11 14:01:05] 2025-10-11 17:53:01,145 | INFO     | sum of deviations: -6782577642.902777
[2025-10-11 14:01:05] 2025-10-11 17:53:01,145 | INFO     | mean x: 1760202832.5972223
[2025-10-11 14:01:05] 2025-10-11 17:53:01,145 | INFO     | mean y: 2597022.486111111
[2025-10-11 14:01:05] 2025-10-11 17:53:01,145 | INFO     | -- intersect: 103179069558.06413
[2025-10-11 14:01:05] 2025-10-11 17:53:01,145 | INFO     | intersect: 103179069558.06413
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | chi2: 0.013088994531346498
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | -- intersect: 103179069558.06413
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | current memory leak: -58.62 B/s (using 72 data points, chi2=0.01)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | could have reported an average CPU frequency of 3790 MHz (6 samples)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | ..............................
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . Timing measurements:
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . get job = 0 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . initial setup = 8 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . payload setup = 50 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . stage-in = 0 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . payload execution = 4801 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . stage-out = 2 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | . log creation = 1 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,146 | INFO     | ..............................
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | 
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | job summary report
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | --------------------------------------------------
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | PanDA job id: 6838118485
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | task id: 46676269
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | errors: (none)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | pilot state: finished 
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | transexitcode: 0
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | exeerrorcode: 0
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | exeerrordiag: 
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | exitcode: 0
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | exitmsg: OK
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | cpuconsumptiontime: 23670 s
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | nevents: 400
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | neventsw: 0
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | pid: 390837
[2025-10-11 14:01:05] 2025-10-11 17:53:01,558 | INFO     | pgrp: 390837
[2025-10-11 14:01:05] 2025-10-11 17:53:01,559 | INFO     | corecount: 8
[2025-10-11 14:01:05] 2025-10-11 17:53:01,559 | INFO     | event service: False
[2025-10-11 14:01:05] 2025-10-11 17:53:01,559 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 13: 2348913, 23: 2348969, 33: 2349259, 34: 2349443, 4856: 2375746, 4857: 2375745, 4859: 2384799, 4861: 2384855, 4899: 2
[2025-10-11 14:01:05] 2025-10-11 17:53:01,559 | INFO     | --------------------------------------------------
[2025-10-11 14:01:05] 2025-10-11 17:53:01,559 | INFO     | 
[2025-10-11 14:01:05] 2025-10-11 17:53:01,559 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-11 14:01:05] 2025-10-11 17:53:01,716 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | job 6838118485 has completed (purged errors)
[2025-10-11 14:01:05] 2025-10-11 17:53:01,717 | INFO     | overall cleanup function is called
[2025-10-11 14:01:05] 2025-10-11 17:53:02,729 | INFO     | --- collectZombieJob: --- 10, [390837]
[2025-10-11 14:01:05] 2025-10-11 17:53:02,729 | INFO     | zombie collector waiting for pid 390837
[2025-10-11 14:01:05] 2025-10-11 17:53:02,729 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 14:01:05] 2025-10-11 17:53:02,729 | INFO     | collected zombie processes
[2025-10-11 14:01:05] 2025-10-11 17:53:02,729 | INFO     | will attempt to kill all subprocesses of pid=390837
[2025-10-11 14:01:05] 2025-10-11 17:53:04,040 | INFO     | process IDs to be killed: [390837] (in reverse order)
[2025-10-11 14:01:05] 2025-10-11 17:53:05,057 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 14:01:05] 2025-10-11 17:53:05,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 14:01:05] 2025-10-11 17:53:05,200 | INFO     | did not find any defunct processes belonging to 390837
[2025-10-11 14:01:05] 2025-10-11 17:53:05,330 | INFO     | did not find any defunct processes belonging to 390837
[2025-10-11 14:01:05] 2025-10-11 17:53:05,330 | INFO     | ready for new job
[2025-10-11 14:01:05] 2025-10-11 17:53:05,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 14:01:05] 2025-10-11 17:53:05,331 | INFO     | ***************************************
[2025-10-11 14:01:05] 2025-10-11 17:53:05,332 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 14:01:05] 2025-10-11 17:53:05,332 | INFO     | ***************************************
[2025-10-11 14:01:05] 2025-10-11 17:53:05,332 | INFO     | 
[2025-10-11 14:01:05] 2025-10-11 17:53:05,358 | INFO     | architecture information:
[2025-10-11 14:01:05] 2025-10-11 17:53:05,376 | INFO     | executing command: cat /etc/os-release
[2025-10-11 14:01:05] 2025-10-11 17:53:05,452 | INFO     | cat /etc/os-release:
[2025-10-11 14:01:05] NAME="CentOS Linux"
[2025-10-11 14:01:05] VERSION="7 (Core)"
[2025-10-11 14:01:05] ID="centos"
[2025-10-11 14:01:05] ID_LIKE="rhel fedora"
[2025-10-11 14:01:05] VERSION_ID="7"
[2025-10-11 14:01:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 14:01:05] ANSI_COLOR="0;31"
[2025-10-11 14:01:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 14:01:05] HOME_URL="https://www.centos.org/"
[2025-10-11 14:01:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 14:01:05] 
[2025-10-11 14:01:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 14:01:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 14:01:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 14:01:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 14:01:05] 
[2025-10-11 14:01:05] 2025-10-11 17:53:05,452 | INFO     | ***************************************
[2025-10-11 14:01:05] 2025-10-11 17:53:05,956 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-11 14:01:05] 2025-10-11 17:53:06,074 | INFO     | sufficient remaining disk space (169518039040 B)
[2025-10-11 14:01:05] 2025-10-11 17:53:06,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 14:01:05] 2025-10-11 17:53:06,075 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 14:01:05] 2025-10-11 17:53:06,075 | INFO     | update_server=False
[2025-10-11 14:01:05] 2025-10-11 17:53:06,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 14:01:05] 2025-10-11 17:53:06,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 14:01:05] 2025-10-11 17:53:06,076 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 14:01:05] 2025-10-11 17:53:06,092 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 14:01:05] 2025-10-11 17:53:06,092 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 14:01:05] 2025-10-11 17:53:06,092 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:01:05] 2025-10-11 17:53:06,092 | INFO     | will abort loop
[2025-10-11 14:01:05] 2025-10-11 17:53:06,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:01:05] 2025-10-11 17:53:06,736 | INFO     | all data control threads have been joined
[2025-10-11 14:01:05] 2025-10-11 17:53:07,060 | INFO     | all job control threads have been joined
[2025-10-11 14:01:05] 2025-10-11 17:53:07,081 | INFO     | [job] retrieve thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,114 | INFO     | [job] job monitor thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,410 | INFO     | all payload control threads have been joined
[2025-10-11 14:01:05] 2025-10-11 17:53:07,425 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,448 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,469 | INFO     | [payload] validate_post thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,469 | INFO     | [payload] failed_post thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,582 | INFO     | [job] validate thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,628 | INFO     | [job] queue monitor thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,708 | INFO     | [data] copytool_in thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:07,742 | INFO     | [data] control thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:08,000 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:08,065 | INFO     | [job] control thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:08,080 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:08,083 | INFO     | [data] copytool_out thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:08,416 | INFO     | [payload] control thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:10,092 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 14:01:05] 2025-10-11 17:53:24,700 | INFO     | [monitor] cgroup control has ended
[2025-10-11 14:01:05] 2025-10-11 17:53:26,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273017587520)>', '<ExcThread(monitor, started 140272147097344)>']
[2025-10-11 14:01:05] 2025-10-11 17:53:31,273 | INFO     | all workflow threads have been joined
[2025-10-11 14:01:05] 2025-10-11 17:53:31,279 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 14:01:05] 2025-10-11 17:53:31,279 | INFO     | traces error code: 0
[2025-10-11 14:01:05] 2025-10-11 17:53:31,279 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 14:01:05] 2025-10-11 17:53:39,507 | INFO     | PID=375367 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 14:01:05] 2025-10-11 17:53:39,507 | INFO     | .. there are 37 such processes running
[2025-10-11 14:01:05] 2025-10-11 17:53:39,508 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 14:01:05] 2025-10-11 17:53:39,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 14:01:05] 2025-10-11 17:53:39,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 14:01:05] 2025-10-11 17:53:39,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 14:01:05] 2025-10-11 17:53:39,508 | INFO     | [monitor] control thread has ended
[2025-10-11 14:01:05] 2025-10-11 17:53:41,390 [wrapper] ==== pilot stdout END ====
[2025-10-11 14:01:05] 2025-10-11 17:53:41,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 14:01:05] 2025-10-11 17:53:41,429 [wrapper] pilotpid: 375367
[2025-10-11 14:01:05] 2025-10-11 17:53:41,439 [wrapper] Pilot exit status: 0
[2025-10-11 14:01:05] 2025-10-11 17:53:41,620 [wrapper] pandaids: 6838118485
[2025-10-11 14:01:05] 2025-10-11 17:53:41,980 [wrapper] cleanup supervisor_pilot  797108 375368
[2025-10-11 14:01:05] 2025-10-11 17:53:42,001 [wrapper] Test setup, not cleaning
[2025-10-11 14:01:05] 2025-10-11 17:53:42,014 [wrapper] apfmon messages muted
[2025-10-11 14:01:05] 2025-10-11 17:53:42,039 [wrapper] ==== wrapper stdout END ====
[2025-10-11 14:01:05] 2025-10-11 17:53:42,059 [wrapper] ==== wrapper stderr END ====
[2025-10-11 14:01:05]  *** Error codes and diagnostics ***
[2025-10-11 14:01:05]     "exeErrorCode": 0,
[2025-10-11 14:01:05]     "exeErrorDiag": "",
[2025-10-11 14:01:05]     "pilotErrorCode": 0,
[2025-10-11 14:01:05]     "pilotErrorDiag": "",
[2025-10-11 14:01:05]  *** Listing of results directory ***
[2025-10-11 14:01:05] total 412584
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 02:01 pilot3.tar.gz
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 02:06 queuedata.json
[2025-10-11 14:01:05] -rwx------. 1 boincer umatlas     36292 Oct 11 02:06 runpilot2-wrapper.sh
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas       100 Oct 11 12:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 14:01:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 12:28 run_atlas
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas       105 Oct 11 12:28 job.xml
[2025-10-11 14:01:05] -rw-r--r--. 2 boincer umatlas 219165520 Oct 11 12:28 EVNT.46676267._002105.pool.root.1
[2025-10-11 14:01:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 12:28 shared
[2025-10-11 14:01:05] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 12:28 input.tar.gz
[2025-10-11 14:01:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 12:28 start_atlas.sh
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas         0 Oct 11 12:28 boinc_lockfile
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 12:28 pandaJob.out
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas    975512 Oct 11 12:30 agis_schedconf.cvmfs.json
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas   1560580 Oct 11 12:30 agis_ddmendpoints.agis.ALL.json
[2025-10-11 14:01:05] drwx------. 5 boincer umatlas      4096 Oct 11 12:30 pilot3
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas 197410938 Oct 11 13:51 HITS.46676269._052372.pool.root.1
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas       530 Oct 11 13:51 boinc_task_state.xml
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas      1051 Oct 11 13:52 memory_monitor_summary.json
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas    320690 Oct 11 13:52 log.46676269._052372.job.log.tgz.1
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas      7827 Oct 11 13:53 heartbeat.json
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas        95 Oct 11 13:53 pilot_heartbeat.json
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas       822 Oct 11 13:53 pilotlog.txt
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas    683723 Oct 11 13:53 log.46676269._052372.job.log.1
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas       357 Oct 11 13:53 output.list
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas       620 Oct 11 13:53 runtime_log
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas   1024000 Oct 11 13:53 result.tar.gz
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas      8703 Oct 11 13:53 runtime_log.err
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas       657 Oct 11 13:53 LZiKDmtvhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeZfNDm70mNAo.diag
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas      7174 Oct 11 14:01 init_data.xml
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 14:01 boinc_mmap_file
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas        27 Oct 11 14:01 wrapper_checkpoint.txt
[2025-10-11 14:01:05] -rw-r--r--. 1 boincer umatlas     22367 Oct 11 14:01 stderr.txt
[2025-10-11 14:01:05] HITS file was successfully produced:
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas 197410938 Oct 11 13:51 shared/HITS.pool.root.1
[2025-10-11 14:01:05]  *** Contents of shared directory: ***
[2025-10-11 14:01:05] total 408400
[2025-10-11 14:01:05] -rw-r--r--. 2 boincer umatlas 219165520 Oct 11 12:28 ATLAS.root_0
[2025-10-11 14:01:05] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 12:28 input.tar.gz
[2025-10-11 14:01:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 12:28 start_atlas.sh
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas 197410938 Oct 11 13:51 HITS.pool.root.1
[2025-10-11 14:01:05] -rw-------. 1 boincer umatlas   1024000 Oct 11 13:53 result.tar.gz
14:01:06 (370640): run_atlas exited; CPU time 23813.692866
14:01:06 (370640): called boinc_finish(0)

</stderr_txt>
]]>

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