Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:46:28 (3198641): wrapper (7.7.26015): starting
08:46:28 (3198641): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 08:46:28] Arguments: --nthreads 4
[2025-10-12 08:46:28] Threads: 4
[2025-10-12 08:46:28] Checking for CVMFS
[2025-10-12 08:46:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:46:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:46:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:46:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:46:28] 2.13.2.0 1261730 1582 50248 151597 0 57 3659954 6144000 2733 130560 0 4203388 99.997 52366 133 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-12 08:46:28] CVMFS is ok
[2025-10-12 08:46:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:46:28] Checking for apptainer binary...
[2025-10-12 08:46:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:46:28] Running /usr/bin/apptainer --version
[2025-10-12 08:46:28] apptainer version 1.4.0
[2025-10-12 08:46:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:46:28] Zen
[2025-10-12 08:46:28] apptainer works
[2025-10-12 08:46:28] Set ATHENA_PROC_NUMBER=4
[2025-10-12 08:46:28] Set ATHENA_CORE_NUMBER=4
[2025-10-12 08:46:28] Starting ATLAS job with PandaID=6838363803
[2025-10-12 08:46:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:33:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:33:59] 2025-10-11 23:32:51,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:33:59] 2025-10-11 23:32:51,365 | INFO     | time since job start (6369s) is within the limit (172800.0s)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,084 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 10:33:59] 2025-10-11 23:32:53,087 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4155.867583333334
[2025-10-12 10:33:59] 2025-10-11 23:32:53,090 | INFO     | using path: /home/michael/Boinc/BOINC/slots/1/PanDA_Pilot-6838363803/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,090 | INFO     | extracted standard info from prmon json
[2025-10-12 10:33:59] 2025-10-11 23:32:53,091 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:33:59] 2025-10-11 23:32:53,091 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:33:59] 2025-10-11 23:32:53,091 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:33:59] 2025-10-11 23:32:53,091 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:33:59] 2025-10-11 23:32:53,092 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:33:59] 2025-10-11 23:32:53,092 | INFO     | sum of square deviations: 348908668.2211526
[2025-10-12 10:33:59] 2025-10-11 23:32:53,093 | INFO     | sum of deviations: 354504968.9038492
[2025-10-12 10:33:59] 2025-10-11 23:32:53,093 | INFO     | mean x: 1760222367.9134614
[2025-10-12 10:33:59] 2025-10-11 23:32:53,093 | INFO     | mean y: 2344841.2115384615
[2025-10-12 10:33:59] 2025-10-11 23:32:53,093 | INFO     | -- intersect: -1786110512.9715793
[2025-10-12 10:33:59] 2025-10-11 23:32:53,093 | INFO     | intersect: -1786110512.9715793
[2025-10-12 10:33:59] 2025-10-11 23:32:53,093 | INFO     | chi2: 1.7984324520874961
[2025-10-12 10:33:59] 2025-10-11 23:32:53,093 | INFO     | sum of square deviations: 300995302.32323164
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | sum of deviations: 584268187.565657
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | mean x: 1760222215.4343433
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | mean y: 2345573.01010101
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | -- intersect: -3414458063.414132
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | intersect: -3414458063.414132
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | chi2: 1.8007455979427973
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | current chi2=1.8007455979427973 (change=-0.12862011317779767 %)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | right removable region: 98
[2025-10-12 10:33:59] 2025-10-11 23:32:53,094 | INFO     | sum of square deviations: 300969072.32323164
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | sum of deviations: -14790705848.69697
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | mean x: 1760222520.4343433
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | mean y: 2391916.9696969697
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | -- intersect: 86506075923.5298
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | intersect: 86506075923.5298
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | chi2: 0.14103637504415806
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | current chi2=0.14103637504415806 (change=92.1578163872403 %)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,095 | INFO     | sum of square deviations: 257634213.8297868
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | sum of deviations: -10134668272.234037
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | mean x: 1760222672.9574468
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | mean y: 2375494.6914893617
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | -- intersect: 69245014546.7967
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | intersect: 69245014546.7967
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | chi2: 0.11376243807135249
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | current chi2=0.11376243807135249 (change=19.338228853560782 %)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | left removable region: 20
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | sum of square deviations: 147229089.79487178
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | sum of deviations: -1765509246.1794875
[2025-10-12 10:33:59] 2025-10-11 23:32:53,096 | INFO     | mean x: 1760222795.0512822
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | mean y: 2342967.794871795
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | -- intersect: 21110193490.6009
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | intersect: 21110193490.6009
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | chi2: 0.016027456390798153
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | -- intersect: 21110193490.6009
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | current memory leak: -11.99 B/s (using 78 data points, chi2=0.02)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | could have reported an average CPU frequency of 4115 MHz (7 samples)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | ..............................
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | . Timing measurements:
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | . get job = 0 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | . initial setup = 5 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | . payload setup = 5 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,097 | INFO     | . stage-in = 0 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,098 | INFO     | . payload execution = 6331 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,098 | INFO     | . stage-out = 0 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,098 | INFO     | . log creation = 0 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,098 | INFO     | ..............................
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | 
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | job summary report
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | --------------------------------------------------
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | PanDA job id: 6838363803
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | task id: 46676269
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | errors: (none)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | pilot state: finished 
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | transexitcode: 0
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | exeerrorcode: 0
[2025-10-12 10:33:59] 2025-10-11 23:32:53,165 | INFO     | exeerrordiag: 
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | exitcode: 0
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | exitmsg: OK
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | cpuconsumptiontime: 23872 s
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | nevents: 400
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | neventsw: 0
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | pid: 3209033
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | pgrp: 3209033
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | corecount: 4
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | event service: False
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | sizes: {0: 2348868, 3: 2349130, 11: 2349158, 6340: 2376262, 6341: 2385338, 6357: 2385476}
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | --------------------------------------------------
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | 
[2025-10-12 10:33:59] 2025-10-11 23:32:53,166 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/1
[2025-10-12 10:33:59] 2025-10-11 23:32:53,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | job 6838363803 has completed (purged errors)
[2025-10-12 10:33:59] 2025-10-11 23:32:53,186 | INFO     | overall cleanup function is called
[2025-10-12 10:33:59] 2025-10-11 23:32:54,193 | INFO     | --- collectZombieJob: --- 10, [3209033]
[2025-10-12 10:33:59] 2025-10-11 23:32:54,194 | INFO     | zombie collector waiting for pid 3209033
[2025-10-12 10:33:59] 2025-10-11 23:32:54,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:33:59] 2025-10-11 23:32:54,194 | INFO     | collected zombie processes
[2025-10-12 10:33:59] 2025-10-11 23:32:54,194 | INFO     | will attempt to kill all subprocesses of pid=3209033
[2025-10-12 10:33:59] 2025-10-11 23:32:54,350 | INFO     | process IDs to be killed: [3209033] (in reverse order)
[2025-10-12 10:33:59] 2025-10-11 23:32:54,409 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:33:59] 2025-10-11 23:32:54,410 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:33:59] 2025-10-11 23:32:54,414 | INFO     | did not find any defunct processes belonging to 3209033
[2025-10-12 10:33:59] 2025-10-11 23:32:54,417 | INFO     | did not find any defunct processes belonging to 3209033
[2025-10-12 10:33:59] 2025-10-11 23:32:54,417 | INFO     | ready for new job
[2025-10-12 10:33:59] 2025-10-11 23:32:54,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:33:59] 2025-10-11 23:32:54,419 | INFO     | ***************************************
[2025-10-12 10:33:59] 2025-10-11 23:32:54,419 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:33:59] 2025-10-11 23:32:54,419 | INFO     | ***************************************
[2025-10-12 10:33:59] 2025-10-11 23:32:54,419 | INFO     | 
[2025-10-12 10:33:59] 2025-10-11 23:32:54,420 | INFO     | architecture information:
[2025-10-12 10:33:59] 2025-10-11 23:32:54,420 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:33:59] 2025-10-11 23:32:54,433 | INFO     | cat /etc/os-release:
[2025-10-12 10:33:59] NAME="CentOS Linux"
[2025-10-12 10:33:59] VERSION="7 (Core)"
[2025-10-12 10:33:59] ID="centos"
[2025-10-12 10:33:59] ID_LIKE="rhel fedora"
[2025-10-12 10:33:59] VERSION_ID="7"
[2025-10-12 10:33:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:33:59] ANSI_COLOR="0;31"
[2025-10-12 10:33:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:33:59] HOME_URL="https://www.centos.org/"
[2025-10-12 10:33:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:33:59] 
[2025-10-12 10:33:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:33:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:33:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:33:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:33:59] 
[2025-10-12 10:33:59] 2025-10-11 23:32:54,434 | INFO     | ***************************************
[2025-10-12 10:33:59] 2025-10-11 23:32:54,936 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/1
[2025-10-12 10:33:59] 2025-10-11 23:32:54,950 | INFO     | sufficient remaining disk space (206958493696 B)
[2025-10-12 10:33:59] 2025-10-11 23:32:54,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:33:59] 2025-10-11 23:32:54,951 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:33:59] 2025-10-11 23:32:54,951 | INFO     | update_server=False
[2025-10-12 10:33:59] 2025-10-11 23:32:54,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:33:59] 2025-10-11 23:32:54,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:33:59] 2025-10-11 23:32:54,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:33:59] 2025-10-11 23:32:54,951 | INFO     | aborting loop
[2025-10-12 10:33:59] 2025-10-11 23:32:55,241 | INFO     | all data control threads have been joined
[2025-10-12 10:33:59] 2025-10-11 23:32:55,474 | INFO     | all job control threads have been joined
[2025-10-12 10:33:59] 2025-10-11 23:32:55,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:33:59] 2025-10-11 23:32:55,864 | INFO     | all payload control threads have been joined
[2025-10-12 10:33:59] 2025-10-11 23:32:55,955 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:55,955 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:55,955 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,246 | INFO     | [data] control thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,292 | INFO     | [job] validate thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,394 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,479 | INFO     | [job] control thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,570 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,619 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,632 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:56,870 | INFO     | [payload] control thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:57,211 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:57,434 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:32:57,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:33:59] 2025-10-11 23:32:57,592 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:33:01,575 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:33:05,041 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:33:59] 2025-10-11 23:33:06,046 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:33:59] 2025-10-11 23:33:24,580 | INFO     | PID=3202449 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:33:59] 2025-10-11 23:33:24,580 | INFO     | .. there are 4 such processes running
[2025-10-12 10:33:59] 2025-10-11 23:33:24,581 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:33:59] 2025-10-11 23:33:24,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:33:59] 2025-10-11 23:33:24,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:33:59] 2025-10-11 23:33:52,410 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:33:59] 2025-10-11 23:33:54,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135551393879872)>', '<ExcThread(monitor, started 135550761686784)>']
[2025-10-12 10:33:59] 2025-10-11 23:33:54,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:33:59] 2025-10-11 23:33:54,729 | INFO     | [monitor] control thread has ended
[2025-10-12 10:33:59] 2025-10-11 23:33:59,222 | INFO     | all workflow threads have been joined
[2025-10-12 10:33:59] 2025-10-11 23:33:59,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:33:59] 2025-10-11 23:33:59,222 | INFO     | traces error code: 0
[2025-10-12 10:33:59] 2025-10-11 23:33:59,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:33:59] 2025-10-11 23:33:59,307 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:33:59] 2025-10-11 23:33:59,310 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:33:59] 2025-10-11 23:33:59,312 [wrapper] pilotpid: 3202449
[2025-10-12 10:33:59] 2025-10-11 23:33:59,314 [wrapper] Pilot exit status: 0
[2025-10-12 10:33:59] 2025-10-11 23:33:59,320 [wrapper] pandaids: 6838363803
[2025-10-12 10:33:59] 2025-10-11 23:33:59,357 [wrapper] cleanup supervisor_pilot 3317996 3202450
[2025-10-12 10:33:59] 2025-10-11 23:33:59,359 [wrapper] Test setup, not cleaning
[2025-10-12 10:33:59] 2025-10-11 23:33:59,362 [wrapper] apfmon messages muted
[2025-10-12 10:33:59] 2025-10-11 23:33:59,364 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:33:59] 2025-10-11 23:33:59,366 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:33:59]  *** Error codes and diagnostics ***
[2025-10-12 10:33:59]     "exeErrorCode": 0,
[2025-10-12 10:33:59]     "exeErrorDiag": "",
[2025-10-12 10:33:59]     "pilotErrorCode": 0,
[2025-10-12 10:33:59]     "pilotErrorDiag": "",
[2025-10-12 10:33:59]  *** Listing of results directory ***
[2025-10-12 10:33:59] total 422484
[2025-10-12 10:33:59] -rw-r--r-- 1 michael michael      5112 Oct 11 21:50 queuedata.json
[2025-10-12 10:33:59] -rw-r--r-- 1 michael michael    557409 Oct 11 21:50 pilot3.tar.gz
[2025-10-12 10:33:59] -rwx------ 1 michael michael     36292 Oct 11 21:51 runpilot2-wrapper.sh
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael       100 Oct 12 08:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:33:59] -rwxr-xr-x 1 michael michael      7986 Oct 12 08:46 run_atlas
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael       105 Oct 12 08:46 job.xml
[2025-10-12 10:33:59] -rw-r--r-- 2 michael michael 223416883 Oct 12 08:46 EVNT.46676267._002280.pool.root.1
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael      9816 Oct 12 08:46 init_data.xml
[2025-10-12 10:33:59] drwxrwx--x 2 michael michael      4096 Oct 12 08:46 shared
[2025-10-12 10:33:59] -rw-r--r-- 2 michael michael    569679 Oct 12 08:46 input.tar.gz
[2025-10-12 10:33:59] -rw-r--r-- 2 michael michael     15120 Oct 12 08:46 start_atlas.sh
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael         0 Oct 12 08:46 boinc_lockfile
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael      2550 Oct 12 08:46 pandaJob.out
[2025-10-12 10:33:59] -rw------- 1 michael michael    975528 Oct 12 08:46 agis_schedconf.cvmfs.json
[2025-10-12 10:33:59] -rw------- 1 michael michael   1560580 Oct 12 08:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:33:59] drwx------ 5 michael michael      4096 Oct 12 08:46 pilot3
[2025-10-12 10:33:59] -rw------- 1 michael michael 202836998 Oct 12 10:32 HITS.46676269._056299.pool.root.1
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael       529 Oct 12 10:32 boinc_task_state.xml
[2025-10-12 10:33:59] -rw------- 1 michael michael      1024 Oct 12 10:32 memory_monitor_summary.json
[2025-10-12 10:33:59] -rw------- 1 michael michael    295939 Oct 12 10:32 log.46676269._056299.job.log.tgz.1
[2025-10-12 10:33:59] -rw------- 1 michael michael      7733 Oct 12 10:32 heartbeat.json
[2025-10-12 10:33:59] -rw------- 1 michael michael        95 Oct 12 10:33 pilot_heartbeat.json
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael      8192 Oct 12 10:33 boinc_mmap_file
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael        27 Oct 12 10:33 wrapper_checkpoint.txt
[2025-10-12 10:33:59] -rw------- 1 michael michael      4907 Oct 12 10:33 pilotlog.txt
[2025-10-12 10:33:59] -rw------- 1 michael michael    930586 Oct 12 10:33 log.46676269._056299.job.log.1
[2025-10-12 10:33:59] -rw------- 1 michael michael       357 Oct 12 10:33 output.list
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael       620 Oct 12 10:33 runtime_log
[2025-10-12 10:33:59] -rw------- 1 michael michael   1249280 Oct 12 10:33 result.tar.gz
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael      8797 Oct 12 10:33 runtime_log.err
[2025-10-12 10:33:59] -rw------- 1 michael michael       641 Oct 12 10:33 FvlKDmANmR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpEgNDmvID19m.diag
[2025-10-12 10:33:59] -rw-rw-r-- 1 michael michael     20864 Oct 12 10:33 stderr.txt
[2025-10-12 10:33:59] HITS file was successfully produced:
[2025-10-12 10:33:59] -rw------- 1 michael michael 202836998 Oct 12 10:32 shared/HITS.pool.root.1
[2025-10-12 10:33:59]  *** Contents of shared directory: ***
[2025-10-12 10:33:59] total 418072
[2025-10-12 10:33:59] -rw-r--r-- 2 michael michael 223416883 Oct 12 08:46 ATLAS.root_0
[2025-10-12 10:33:59] -rw-r--r-- 2 michael michael    569679 Oct 12 08:46 input.tar.gz
[2025-10-12 10:33:59] -rw-r--r-- 2 michael michael     15120 Oct 12 08:46 start_atlas.sh
[2025-10-12 10:33:59] -rw------- 1 michael michael 202836998 Oct 12 10:32 HITS.pool.root.1
[2025-10-12 10:33:59] -rw------- 1 michael michael   1249280 Oct 12 10:33 result.tar.gz
10:34:01 (3198641): run_atlas exited; CPU time 23938.143632
10:34:01 (3198641): called boinc_finish(0)

</stderr_txt>
]]>

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