Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 19:15:20 (55422): vboxwrapper version 26210
2025-10-11 19:15:20 (55422): BOINC client version: 8.2.4
2025-10-11 19:15:20 (55422): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-11 19:15:20 (55422): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 19:15:20 (55422): Create VM. (boinc_f982882d4e861f7c, slot#0)
2025-10-11 19:15:21 (55422): Setting Memory Size for VM. (4100MB)
2025-10-11 19:15:21 (55422): Setting CPU Count for VM. (1)
2025-10-11 19:15:21 (55422): Setting Chipset Options for VM.
2025-10-11 19:15:21 (55422): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 19:15:21 (55422): Setting Boot Options for VM.
2025-10-11 19:15:21 (55422): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 19:15:21 (55422): Enabling VM Network Access.
2025-10-11 19:15:21 (55422): Disabling USB Support for VM.
2025-10-11 19:15:21 (55422): Disabling COM Port Support for VM.
2025-10-11 19:15:21 (55422): Disabling LPT Port Support for VM.
2025-10-11 19:15:21 (55422): Disabling Audio Support for VM.
2025-10-11 19:15:21 (55422): Disabling Clipboard Support for VM.
2025-10-11 19:15:21 (55422): Disabling Drag and Drop Support for VM.
2025-10-11 19:15:21 (55422): Adding storage controller(s) to VM.
2025-10-11 19:15:22 (55422): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 19:15:22 (55422): Adding VirtualBox Guest Additions to VM.
2025-10-11 19:15:22 (55422): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 19:15:22 (55422): forwarding host port 52475 to guest port 80
2025-10-11 19:15:22 (55422): Enabling remote desktop for VM.
2025-10-11 19:15:23 (55422): Enabling shared directory for VM.
2025-10-11 19:15:23 (55422): Starting VM using VBoxManage interface. (boinc_f982882d4e861f7c, slot#0)
2025-10-11 19:15:24 (55422): Successfully started VM. (PID = '56039')
2025-10-11 19:15:24 (55422): Reporting VM Process ID to BOINC.
2025-10-11 19:15:24 (55422): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-11 19:15:24 (55422): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 19:15:24 (55422): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 19:15:24 (55422): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 19:15:24 (55422): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 19:15:24 (55422): Detected: Web Application Enabled (http://localhost:52475)
2025-10-11 19:15:24 (55422): Detected: Remote Desktop Enabled (localhost:54841)
2025-10-11 19:15:24 (55422): Preference change detected
2025-10-11 19:15:24 (55422): Setting CPU throttle for VM. (20%)
2025-10-11 19:15:24 (55422): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 19:15:26 (55422): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 19:15:26 (55422): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 19:15:31 (55422): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 19:15:31 (55422): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 19:15:31 (55422): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 19:15:44 (55422): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 19:15:44 (55422): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 19:16:24 (55422): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.000252 main     Log opened 2025-10-11T17:16:23.031131000Z
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.000450 main     OS Product: Linux
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.000500 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.000538 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.000579 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.000580 main     Process ID: 1269
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.000581 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 19:16:24 (55422): Guest Log: 00:00:00.002853 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 19:16:24 (55422): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 19:16:24 (55422): Guest Log: [INFO] Mounting shared directory
2025-10-11 19:16:25 (55422): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 19:16:29 (55422): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 19:16:29 (55422): Guest Log: [INFO] Detected branch: prod
2025-10-11 19:16:29 (55422): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 19:16:29 (55422): Guest Log: Copying input files
2025-10-11 19:16:37 (55422): Guest Log: Copied input files into RunAtlas.
2025-10-11 19:16:37 (55422): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 19:16:37 (55422): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 19:16:37 (55422): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 19:16:37 (55422): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 19:16:48 (55422): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 19:16:48 (55422): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 19:16:48 (55422): Guest Log: 2.6.3.0 1540 0 32104 151591 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 19:16:50 (55422): Guest Log: copied the webapp to /var/www
2025-10-11 19:16:50 (55422): Guest Log: core_number=1
2025-10-11 19:16:51 (55422): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 19:16:51 (55422): Guest Log:  *** Starting ATLAS job. (PandaID=6838365923 taskID=46676269) ***
2025-10-11 20:54:25 (55422): Status Report: Elapsed Time: '6000.000000'
2025-10-11 20:54:25 (55422): Status Report: CPU Time: '281.050000'
2025-10-11 22:33:26 (55422): Status Report: Elapsed Time: '12000.000000'
2025-10-11 22:33:26 (55422): Status Report: CPU Time: '1109.640000'
2025-10-11 22:49:56 (55422): Preference change detected
2025-10-11 22:49:56 (55422): Setting CPU throttle for VM. (20%)
2025-10-11 22:49:57 (55422): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 00:12:27 (55422): Status Report: Elapsed Time: '18000.000000'
2025-10-12 00:12:27 (55422): Status Report: CPU Time: '2872.250000'
2025-10-12 01:51:28 (55422): Status Report: Elapsed Time: '24000.000000'
2025-10-12 01:51:28 (55422): Status Report: CPU Time: '4634.440000'
2025-10-12 03:30:30 (55422): Status Report: Elapsed Time: '30000.000000'
2025-10-12 03:30:30 (55422): Status Report: CPU Time: '6396.320000'
2025-10-12 05:09:31 (55422): Status Report: Elapsed Time: '36000.000000'
2025-10-12 05:09:31 (55422): Status Report: CPU Time: '8156.960000'
2025-10-12 06:48:32 (55422): Status Report: Elapsed Time: '42000.000000'
2025-10-12 06:48:32 (55422): Status Report: CPU Time: '9919.620000'
2025-10-12 08:27:33 (55422): Status Report: Elapsed Time: '48000.000000'
2025-10-12 08:27:33 (55422): Status Report: CPU Time: '11681.730000'
2025-10-12 10:06:34 (55422): Status Report: Elapsed Time: '54000.000000'
2025-10-12 10:06:34 (55422): Status Report: CPU Time: '13443.410000'
2025-10-12 10:50:00 (55422): Preference change detected
2025-10-12 10:50:00 (55422): Setting CPU throttle for VM. (20%)
2025-10-12 10:50:00 (55422): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 11:45:35 (55422): Status Report: Elapsed Time: '60000.000000'
2025-10-12 11:45:35 (55422): Status Report: CPU Time: '15204.460000'
2025-10-12 13:24:36 (55422): Status Report: Elapsed Time: '66000.000000'
2025-10-12 13:24:36 (55422): Status Report: CPU Time: '16966.230000'
2025-10-12 15:03:37 (55422): Status Report: Elapsed Time: '72000.000000'
2025-10-12 15:03:37 (55422): Status Report: CPU Time: '18728.220000'
2025-10-12 16:39:54 (55422): Guest Log:  *** Job finished ***
2025-10-12 16:39:54 (55422): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 16:39:54 (55422): Guest Log: 2025-10-12 14:39:07,622 | INFO     | [data] copytool_out thread has finished
2025-10-12 16:39:54 (55422): Guest Log: 2025-10-12 14:39:10,623 | INFO     | [data] queue_monitor thread has finished
2025-10-12 16:39:54 (55422): Guest Log: 2025-10-12 14:39:46,997 | INFO     | [monitor] cgroup control has ended
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:48,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960553789248)>', '<ExcThread(monitor, started 139960250242816)>']
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:49,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:49,338 | INFO     | [monitor] control thread has ended
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,403 | INFO     | all workflow threads have been joined
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,404 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,404 | INFO     | traces error code: 0
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,404 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,631 [wrapper] ==== pilot stdout END ====
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,714 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,721 [wrapper] pilotpid: 5884
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,727 [wrapper] Pilot exit status: 0
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,880 [wrapper] pandaids: 6838365923
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,937 [wrapper] cleanup supervisor_pilot 17798 5885
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,939 [wrapper] Test setup, not cleaning
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,941 [wrapper] apfmon messages muted
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,942 [wrapper] ==== wrapper stdout END ====
2025-10-12 16:39:55 (55422): Guest Log: 2025-10-12 14:39:53,943 [wrapper] ==== wrapper stderr END ====
2025-10-12 16:39:55 (55422): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 16:39:55 (55422): Guest Log:     "exeErrorCode": 68,
2025-10-12 16:39:55 (55422): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Long ERROR message at line 445 (see jobReport for further details)\"",
2025-10-12 16:39:55 (55422): Guest Log:     "pilotErrorCode": 1305,
2025-10-12 16:39:55 (55422): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Long ERROR message at line 445 (see jobReport for further details)\"",
2025-10-12 16:39:55 (55422): Guest Log:  *** Listing of results directory ***
2025-10-12 16:39:55 (55422): Guest Log: total 25936
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas   557409 Oct 11 11:21 pilot3.tar.gz
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas     5112 Oct 11 11:28 queuedata.json
2025-10-12 16:39:55 (55422): Guest Log: -rwx------. 1 atlas atlas    36292 Oct 11 11:29 runpilot2-wrapper.sh
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas   569682 Oct 11 17:16 input.tar.gz
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas    15120 Oct 11 17:16 start_atlas.sh
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas     6205 Oct 11 17:16 init_data.xml
2025-10-12 16:39:55 (55422): Guest Log: lrwxrwxrwx. 1 atlas atlas       20 Oct 11 17:16 EVNT.46676267._002282.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas     2550 Oct 11 17:16 pandaJob.out
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas   975520 Oct 11 17:17 agis_schedconf.cvmfs.json
2025-10-12 16:39:55 (55422): Guest Log: drwx------. 5 atlas atlas     4096 Oct 11 17:17 pilot3
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas     1020 Oct 12 14:36 memory_monitor_summary.json
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas  1159379 Oct 12 14:36 log.46676269._056850.job.log.tgz.1
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas  1560580 Oct 12 14:36 agis_ddmendpoints.agis.ALL.json
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas       95 Oct 12 14:38 pilot_heartbeat.json
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas     9614 Oct 12 14:39 heartbeat.json
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas     4612 Oct 12 14:39 pilotlog.txt
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas 10200335 Oct 12 14:39 log.46676269._056850.job.log.1
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas      188 Oct 12 14:39 output.list
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas      662 Oct 12 14:39 VjRNDmMymR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjlRMDmpOc07n.diag
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas     8382 Oct 12 14:39 runtime_log.err
2025-10-12 16:39:55 (55422): Guest Log: -rw-r--r--. 1 atlas atlas      620 Oct 12 14:39 runtime_log
2025-10-12 16:39:55 (55422): Guest Log: -rw-------. 1 atlas atlas 11376640 Oct 12 14:39 result.tar.gz
2025-10-12 16:39:55 (55422): Guest Log: Looking for outputfile HITS.46676269._056850.pool.root.1
2025-10-12 16:39:55 (55422): Guest Log: No HITS file was produced
2025-10-12 16:39:55 (55422): Guest Log: Successfully finished the ATLAS job!
2025-10-12 16:39:55 (55422): Guest Log: Copying the results back to the shared directory!
2025-10-12 16:39:56 (55422): Guest Log:  *** Contents of shared directory: ***
2025-10-12 16:39:56 (55422): Guest Log: total 226740
2025-10-12 16:39:56 (55422): Guest Log: -rw-r--r--. 1 root root 220198424 Oct 11 17:15 ATLAS.root_0
2025-10-12 16:39:56 (55422): Guest Log: -rw-r--r--. 1 root root      6205 Oct 11 17:15 init_data.xml
2025-10-12 16:39:56 (55422): Guest Log: -rw-r--r--. 1 root root    569682 Oct 11 17:15 input.tar.gz
2025-10-12 16:39:56 (55422): Guest Log: -rw-r--r--. 1 root root  11376640 Oct 12 14:39 result.tar.gz
2025-10-12 16:39:56 (55422): Guest Log: -rw-r--r--. 1 root root     15120 Oct 11 17:15 start_atlas.sh
2025-10-12 16:39:56 (55422): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 16:39:56 (55422): VM Completion File Detected.
2025-10-12 16:39:56 (55422): Powering off VM.
2025-10-12 16:39:57 (55422): Successfully stopped VM.
2025-10-12 16:39:57 (55422): Deregistering VM. (boinc_f982882d4e861f7c, slot#0)
2025-10-12 16:39:57 (55422): Removing network bandwidth throttle group from VM.
2025-10-12 16:39:57 (55422): Removing VM from VirtualBox.
2025-10-12 16:40:02 (55422): called boinc_finish(0)

</stderr_txt>
]]>

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