Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 18:13:26 (14796): vboxwrapper version 26210
2025-10-11 18:13:26 (14796): BOINC client version: 7.20.2
2025-10-11 18:13:26 (14796): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-10-11 18:13:27 (14796): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 18:13:27 (14796): Create VM. (boinc_764d6fd963450b6b, slot#2)
2025-10-11 18:13:27 (14796): Setting Memory Size for VM. (4200MB)
2025-10-11 18:13:28 (14796): Setting CPU Count for VM. (2)
2025-10-11 18:13:28 (14796): Setting Chipset Options for VM.
2025-10-11 18:13:28 (14796): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 18:13:29 (14796): Setting Boot Options for VM.
2025-10-11 18:13:29 (14796): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 18:13:29 (14796): Enabling VM Network Access.
2025-10-11 18:13:30 (14796): Disabling USB Support for VM.
2025-10-11 18:13:30 (14796): Disabling COM Port Support for VM.
2025-10-11 18:13:30 (14796): Disabling LPT Port Support for VM.
2025-10-11 18:13:31 (14796): Disabling Audio Support for VM.
2025-10-11 18:13:31 (14796): Disabling Clipboard Support for VM.
2025-10-11 18:13:31 (14796): Disabling Drag and Drop Support for VM.
2025-10-11 18:13:31 (14796): Adding storage controller(s) to VM.
2025-10-11 18:13:32 (14796): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 18:13:34 (14796): Adding VirtualBox Guest Additions to VM.
2025-10-11 18:13:34 (14796): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 18:13:35 (14796): forwarding host port 51591 to guest port 80
2025-10-11 18:13:35 (14796): Enabling remote desktop for VM.
2025-10-11 18:13:35 (14796): Enabling shared directory for VM.
2025-10-11 18:13:36 (14796): Starting VM using VBoxManage interface. (boinc_764d6fd963450b6b, slot#2)
2025-10-11 18:13:46 (14796): Successfully started VM. (PID = '15784')
2025-10-11 18:13:46 (14796): Reporting VM Process ID to BOINC.
2025-10-11 18:13:46 (14796): Guest Log: BIOS: VirtualBox 7.1.6
2025-10-11 18:13:46 (14796): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 18:13:46 (14796): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 18:13:46 (14796): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 18:13:46 (14796): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 18:13:46 (14796): Detected: Web Application Enabled (http://localhost:51591)
2025-10-11 18:13:46 (14796): Detected: Remote Desktop Enabled (localhost:51600)
2025-10-11 18:13:46 (14796): Preference change detected
2025-10-11 18:13:46 (14796): Setting CPU throttle for VM. (80%)
2025-10-11 18:13:47 (14796): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 18:13:48 (14796): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 18:13:48 (14796): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 18:13:52 (14796): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 18:13:52 (14796): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 18:13:52 (14796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 18:13:59 (14796): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 18:13:59 (14796): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 18:14:18 (14796): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.000462 main     Log opened 2025-10-11T18:14:17.275113000Z
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.000691 main     OS Product: Linux
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.000772 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.000846 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.000923 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.000926 main     Process ID: 1279
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.000928 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 18:14:18 (14796): Guest Log: 00:00:00.003235 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 18:14:18 (14796): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 18:14:18 (14796): Guest Log: [INFO] Mounting shared directory
2025-10-11 18:14:19 (14796): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 18:14:23 (14796): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 18:14:23 (14796): Guest Log: [INFO] Detected branch: prod
2025-10-11 18:14:23 (14796): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 18:14:23 (14796): Guest Log: Copying input files
2025-10-11 18:14:26 (14796): Guest Log: Copied input files into RunAtlas.
2025-10-11 18:14:26 (14796): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 18:14:26 (14796): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 18:14:26 (14796): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 18:14:26 (14796): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 18:14:28 (14796): Guest Log: 00:00:10.010891 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 675 098 000ns (GuestNow=1 760 199 268 609 687 000 ns GuestLast=1 760 206 457 284 785 000 ns fSetTimeLastLoop=true )
2025-10-11 18:14:35 (14796): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 18:14:35 (14796): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 18:14:35 (14796): Guest Log: 2.6.3.0 1552 0 32268 151590 3 1 3120538 4096000 0 65024 0 0 n/a 1292 3230 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 18:14:36 (14796): Guest Log: copied the webapp to /var/www
2025-10-11 18:14:36 (14796): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-11 18:14:36 (14796): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-11 18:14:37 (14796): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 18:14:37 (14796): Guest Log:  *** Starting ATLAS job. (PandaID=6838452877 taskID=46676269) ***
2025-10-11 19:54:06 (14796): Status Report: Elapsed Time: '6000.453709'
2025-10-11 19:54:06 (14796): Status Report: CPU Time: '9755.281250'
2025-10-11 21:34:20 (14796): Status Report: Elapsed Time: '12001.002827'
2025-10-11 21:34:20 (14796): Status Report: CPU Time: '20564.171875'
2025-10-11 23:14:31 (14796): Status Report: Elapsed Time: '18001.002827'
2025-10-11 23:14:31 (14796): Status Report: CPU Time: '31368.984375'
2025-10-12 00:54:49 (14796): Status Report: Elapsed Time: '24001.002827'
2025-10-12 00:54:49 (14796): Status Report: CPU Time: '42173.484375'
2025-10-12 02:35:01 (14796): Status Report: Elapsed Time: '30001.002827'
2025-10-12 02:35:01 (14796): Status Report: CPU Time: '52977.718750'
2025-10-12 04:15:12 (14796): Status Report: Elapsed Time: '36001.002827'
2025-10-12 04:15:12 (14796): Status Report: CPU Time: '63782.484375'
2025-10-12 05:55:43 (14796): Status Report: Elapsed Time: '42001.575813'
2025-10-12 05:55:43 (14796): Status Report: CPU Time: '74605.937500'
2025-10-12 07:35:55 (14796): Status Report: Elapsed Time: '48001.575813'
2025-10-12 07:35:55 (14796): Status Report: CPU Time: '85413.156250'
2025-10-12 09:16:07 (14796): Status Report: Elapsed Time: '54001.575813'
2025-10-12 09:16:07 (14796): Status Report: CPU Time: '96221.765625'
2025-10-12 10:56:19 (14796): Status Report: Elapsed Time: '60001.575813'
2025-10-12 10:56:19 (14796): Status Report: CPU Time: '107029.265625'
2025-10-12 12:36:36 (14796): Status Report: Elapsed Time: '66001.986565'
2025-10-12 12:36:36 (14796): Status Report: CPU Time: '117837.765625'
2025-10-12 14:16:49 (14796): Status Report: Elapsed Time: '72001.986565'
2025-10-12 14:16:49 (14796): Status Report: CPU Time: '128642.296875'
2025-10-12 15:05:01 (14796): Guest Log:  *** Job finished ***
2025-10-12 15:05:01 (14796): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:52,950 | INFO     | found 0 job(s) in 20 queues
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:52,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:52,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:53,079 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346749364032)>', '<ExcThread(monitor, started 140346151388928)>']
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:53,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:53,952 | INFO     | [monitor] control thread has ended
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,085 | INFO     | all workflow threads have been joined
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,085 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,085 | INFO     | traces error code: 0
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,278 [wrapper] ==== pilot stdout END ====
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,288 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,295 [wrapper] pilotpid: 5928
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,319 [wrapper] Pilot exit status: 0
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,476 [wrapper] pandaids: 6838452877
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,533 [wrapper] cleanup supervisor_pilot  9927 5929
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,544 [wrapper] Test setup, not cleaning
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,555 [wrapper] apfmon messages muted
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,567 [wrapper] ==== wrapper stdout END ====
2025-10-12 15:05:01 (14796): Guest Log: 2025-10-12 13:04:58,578 [wrapper] ==== wrapper stderr END ====
2025-10-12 15:05:01 (14796): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 15:05:01 (14796): Guest Log:     "exeErrorCode": 0,
2025-10-12 15:05:01 (14796): Guest Log:     "exeErrorDiag": "",
2025-10-12 15:05:01 (14796): Guest Log:     "pilotErrorCode": 0,
2025-10-12 15:05:01 (14796): Guest Log:     "pilotErrorDiag": "",
2025-10-12 15:05:01 (14796): Guest Log:  *** Listing of results directory ***
2025-10-12 15:05:01 (14796): Guest Log: total 209776
2025-10-12 15:05:01 (14796): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 13:40 pilot3.tar.gz
2025-10-12 15:05:01 (14796): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 13:53 queuedata.json
2025-10-12 15:05:01 (14796): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 13:56 runpilot2-wrapper.sh
2025-10-12 15:05:01 (14796): Guest Log: -rwxr-xr-x. 1 atlas atlas     10489 Oct 11 16:14 init_data.xml
2025-10-12 15:05:01 (14796): Guest Log: -rwxr-xr-x. 1 atlas atlas    569686 Oct 11 16:14 input.tar.gz
2025-10-12 15:05:01 (14796): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 16:14 start_atlas.sh
2025-10-12 15:05:01 (14796): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 16:14 EVNT.46676267._002359.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 15:05:01 (14796): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 16:14 pandaJob.out
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas    975512 Oct 11 16:15 agis_schedconf.cvmfs.json
2025-10-12 15:05:01 (14796): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 16:15 pilot3
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas 189139469 Oct 12 13:02 HITS.46676269._058834.pool.root.1
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas      1028 Oct 12 13:03 memory_monitor_summary.json
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 13:03 agis_ddmendpoints.agis.ALL.json
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas   1161265 Oct 12 13:03 log.46676269._058834.job.log.tgz.1
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas      7790 Oct 12 13:04 heartbeat.json
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 13:04 pilot_heartbeat.json
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas      4991 Oct 12 13:04 pilotlog.txt
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas   9760438 Oct 12 13:04 log.46676269._058834.job.log.1
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 13:04 output.list
2025-10-12 15:05:01 (14796): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 13:04 runtime_log
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas  10936320 Oct 12 13:04 result.tar.gz
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas       662 Oct 12 13:04 sq3MDm6FpR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeagNDmr3DoTo.diag
2025-10-12 15:05:01 (14796): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Oct 12 13:04 runtime_log.err
2025-10-12 15:05:01 (14796): Guest Log: Looking for outputfile HITS.46676269._058834.pool.root.1
2025-10-12 15:05:01 (14796): Guest Log: HITS file was successfully produced
2025-10-12 15:05:01 (14796): Guest Log: -rw-------. 1 atlas atlas 189139469 Oct 12 13:02 /home/atlas/RunAtlas/HITS.46676269._058834.pool.root.1
2025-10-12 15:05:04 (14796): Guest Log: Successfully finished the ATLAS job!
2025-10-12 15:05:04 (14796): Guest Log: Copying the results back to the shared directory!
2025-10-12 15:05:04 (14796): Guest Log:  *** Contents of shared directory: ***
2025-10-12 15:05:04 (14796): Guest Log: total 411628
2025-10-12 15:05:04 (14796): Guest Log: -rwxrwxrwx. 1 root root 220826641 Oct 11 16:13 ATLAS.root_0
2025-10-12 15:05:04 (14796): Guest Log: -rwxrwxrwx. 1 root root 189139469 Oct 12 13:05 HITS.pool.root.1
2025-10-12 15:05:04 (14796): Guest Log: -rwxrwxrwx. 1 root root     10489 Oct 11 16:13 init_data.xml
2025-10-12 15:05:04 (14796): Guest Log: -rwxrwxrwx. 1 root root    569686 Oct 11 16:12 input.tar.gz
2025-10-12 15:05:04 (14796): Guest Log: -rwxrwxrwx. 1 root root  10936320 Oct 12 13:05 result.tar.gz
2025-10-12 15:05:04 (14796): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 16:12 start_atlas.sh
2025-10-12 15:05:04 (14796): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 15:05:04 (14796): VM Completion File Detected.
2025-10-12 15:05:04 (14796): Powering off VM.
2025-10-12 15:05:06 (14796): Successfully stopped VM.
2025-10-12 15:05:06 (14796): Deregistering VM. (boinc_764d6fd963450b6b, slot#2)
2025-10-12 15:05:06 (14796): Removing network bandwidth throttle group from VM.
2025-10-12 15:05:06 (14796): Removing VM from VirtualBox.
2025-10-12 15:05:12 (14796): called boinc_finish(0)

</stderr_txt>
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