Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:59:26 (18772): wrapper (7.7.26015): starting
11:59:26 (18772): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 11:59:26] Arguments: --nthreads 12
[2025-10-11 11:59:26] Threads: 12
[2025-10-11 11:59:26] Checking for CVMFS
[2025-10-11 11:59:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 11:59:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 11:59:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 11:59:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 11:59:26] 2.11.2.0 2925 221653 99164 151589 0 57 20162210 20275201 1 130560 1 106986819 99.984 12851595 12144 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 11:59:26] CVMFS is ok
[2025-10-11 11:59:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 11:59:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 11:59:26] Further information can be found at the LHC@home message board.
[2025-10-11 11:59:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 11:59:26] Checking for apptainer binary...
[2025-10-11 11:59:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 11:59:26] Running /usr/bin/apptainer --version
[2025-10-11 11:59:26] apptainer version 1.3.2-1.el7
[2025-10-11 11:59:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 11:59:27] c-205-10.aglt2.org
[2025-10-11 11:59:27] apptainer works
[2025-10-11 11:59:27] Set ATHENA_PROC_NUMBER=12
[2025-10-11 11:59:27] Set ATHENA_CORE_NUMBER=12
[2025-10-11 11:59:27] Starting ATLAS job with PandaID=6838182184
[2025-10-11 11:59:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 13:14:56]  *** The last 200 lines of the pilot log: ***
[2025-10-11 13:14:56]  status=None
[2025-10-11 13:14:56]  status_code=0
[2025-10-11 13:14:56]  storage_token=
[2025-10-11 13:14:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838182184/log.46676269._053254.job.log.tgz.1
[2025-10-11 13:14:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/0f/log.46676269._053254.job.log.tgz.1
[2025-10-11 13:14:56]  workdir=None
[2025-10-11 13:14:56] ]
[2025-10-11 13:14:56] 2025-10-11 17:13:53,769 | INFO     | transferring file log.46676269._053254.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838182184/log.46676269._053254.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 13:14:56] 2025-10-11 17:13:53,770 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838182184/log.46676269._053254.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._053254.job
[2025-10-11 13:14:56] 2025-10-11 17:13:53,791 | INFO     | adding to output.list: log.46676269._053254.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/0f/log.46676269._053254.job.log.tg
[2025-10-11 13:14:56] 2025-10-11 17:13:53,792 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 13:14:56] 2025-10-11 17:13:53,792 | INFO     | summary of transferred files:
[2025-10-11 13:14:56] 2025-10-11 17:13:53,792 | INFO     |  -- lfn=log.46676269._053254.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 13:14:56] 2025-10-11 17:13:53,792 | INFO     | stage-out finished correctly
[2025-10-11 13:14:56] 2025-10-11 17:13:54,840 | INFO     | time since job start (4452s) is within the limit (172800.0s)
[2025-10-11 13:14:56] 2025-10-11 17:13:55,581 | INFO     | monitor loop #333: job 0:6838182184 is in state 'finished'
[2025-10-11 13:14:56] 2025-10-11 17:13:55,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:14:56] 2025-10-11 17:13:55,923 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 13:14:56] 2025-10-11 17:13:56,846 | INFO     | time since job start (4454s) is within the limit (172800.0s)
[2025-10-11 13:14:56] 2025-10-11 17:13:57,367 | INFO     | job 6838182184 has state=finished
[2025-10-11 13:14:56] 2025-10-11 17:13:57,368 | INFO     | preparing for final server update for job 6838182184 in state='finished'
[2025-10-11 13:14:56] 2025-10-11 17:13:57,368 | INFO     | this job has now completed (state=finished)
[2025-10-11 13:14:56] 2025-10-11 17:13:57,368 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 13:14:56] 2025-10-11 17:13:57,369 | INFO     | log transfer has been attempted: DONE
[2025-10-11 13:14:56] 2025-10-11 17:13:57,369 | INFO     | job 6838182184 has finished - writing final server update
[2025-10-11 13:14:56] 2025-10-11 17:13:57,369 | INFO     | total number of processed events: 400 (read)
[2025-10-11 13:14:56] 2025-10-11 17:13:57,370 | INFO     | executing command: lscpu
[2025-10-11 13:14:56] 2025-10-11 17:13:57,396 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 13:14:56] 2025-10-11 17:13:58,092 | INFO     | monitor loop #334: job 0:6838182184 is in state 'finished'
[2025-10-11 13:14:56] 2025-10-11 17:13:58,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:14:56] 2025-10-11 17:13:58,852 | INFO     | time since job start (4456s) is within the limit (172800.0s)
[2025-10-11 13:14:56] 2025-10-11 17:14:00,595 | INFO     | monitor loop #335: job 0:6838182184 is in state 'finished'
[2025-10-11 13:14:56] 2025-10-11 17:14:00,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:14:56] 2025-10-11 17:14:00,857 | INFO     | time since job start (4458s) is within the limit (172800.0s)
[2025-10-11 13:14:56] 2025-10-11 17:14:01,975 | INFO     | PID=22448 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 13:14:56] 2025-10-11 17:14:02,092 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 13:14:56] 2025-10-11 17:14:02,096 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1828.9166666666667
[2025-10-11 13:14:56] 2025-10-11 17:14:02,098 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838182184/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:14:56] 2025-10-11 17:14:02,098 | INFO     | extracted standard info from prmon json
[2025-10-11 13:14:56] 2025-10-11 17:14:02,099 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 13:14:56] 2025-10-11 17:14:02,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 13:14:56] 2025-10-11 17:14:02,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 13:14:56] 2025-10-11 17:14:02,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 13:14:56] 2025-10-11 17:14:02,100 | INFO     | fitting pss+swap vs Time
[2025-10-11 13:14:56] 2025-10-11 17:14:02,101 | INFO     | sum of square deviations: 89127252.5
[2025-10-11 13:14:56] 2025-10-11 17:14:02,101 | INFO     | sum of deviations: -3275866529.999999
[2025-10-11 13:14:56] 2025-10-11 17:14:02,101 | INFO     | mean x: 1760200698.5
[2025-10-11 13:14:56] 2025-10-11 17:14:02,101 | INFO     | mean y: 2708318.393939394
[2025-10-11 13:14:56] 2025-10-11 17:14:02,101 | INFO     | -- intersect: 64698773691.87518
[2025-10-11 13:14:56] 2025-10-11 17:14:02,102 | INFO     | intersect: 64698773691.87518
[2025-10-11 13:14:56] 2025-10-11 17:14:02,102 | INFO     | chi2: 0.06978234894977553
[2025-10-11 13:14:56] 2025-10-11 17:14:02,102 | INFO     | -- intersect: 64698773691.87518
[2025-10-11 13:14:56] 2025-10-11 17:14:02,102 | INFO     | current memory leak: -36.75 B/s (using 66 data points, chi2=0.07)
[2025-10-11 13:14:56] 2025-10-11 17:14:02,102 | INFO     | could have reported an average CPU frequency of 2082 MHz (6 samples)
[2025-10-11 13:14:56] 2025-10-11 17:14:02,102 | INFO     | ..............................
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . Timing measurements:
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . get job = 0 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . initial setup = 2 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . payload setup = 7 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . stage-in = 0 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . payload execution = 4423 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . stage-out = 0 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | . log creation = 0 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,103 | INFO     | ..............................
[2025-10-11 13:14:56] 2025-10-11 17:14:02,456 | INFO     | 
[2025-10-11 13:14:56] 2025-10-11 17:14:02,457 | INFO     | job summary report
[2025-10-11 13:14:56] 2025-10-11 17:14:02,457 | INFO     | --------------------------------------------------
[2025-10-11 13:14:56] 2025-10-11 17:14:02,457 | INFO     | PanDA job id: 6838182184
[2025-10-11 13:14:56] 2025-10-11 17:14:02,457 | INFO     | task id: 46676269
[2025-10-11 13:14:56] 2025-10-11 17:14:02,457 | INFO     | errors: (none)
[2025-10-11 13:14:56] 2025-10-11 17:14:02,457 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 13:14:56] 2025-10-11 17:14:02,458 | INFO     | pilot state: finished 
[2025-10-11 13:14:56] 2025-10-11 17:14:02,458 | INFO     | transexitcode: 0
[2025-10-11 13:14:56] 2025-10-11 17:14:02,458 | INFO     | exeerrorcode: 0
[2025-10-11 13:14:56] 2025-10-11 17:14:02,458 | INFO     | exeerrordiag: 
[2025-10-11 13:14:56] 2025-10-11 17:14:02,458 | INFO     | exitcode: 0
[2025-10-11 13:14:56] 2025-10-11 17:14:02,458 | INFO     | exitmsg: OK
[2025-10-11 13:14:56] 2025-10-11 17:14:02,459 | INFO     | cpuconsumptiontime: 47683 s
[2025-10-11 13:14:56] 2025-10-11 17:14:02,459 | INFO     | nevents: 400
[2025-10-11 13:14:56] 2025-10-11 17:14:02,459 | INFO     | neventsw: 0
[2025-10-11 13:14:56] 2025-10-11 17:14:02,459 | INFO     | pid: 28998
[2025-10-11 13:14:56] 2025-10-11 17:14:02,459 | INFO     | pgrp: 28998
[2025-10-11 13:14:56] 2025-10-11 17:14:02,459 | INFO     | corecount: 12
[2025-10-11 13:14:56] 2025-10-11 17:14:02,460 | INFO     | event service: False
[2025-10-11 13:14:56] 2025-10-11 17:14:02,460 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 4434: 2375252, 4435: 2384250, 4437: 2384434, 4443: 2384628}
[2025-10-11 13:14:56] 2025-10-11 17:14:02,460 | INFO     | --------------------------------------------------
[2025-10-11 13:14:56] 2025-10-11 17:14:02,460 | INFO     | 
[2025-10-11 13:14:56] 2025-10-11 17:14:02,460 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 13:14:56] 2025-10-11 17:14:02,485 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,486 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 13:14:56] 2025-10-11 17:14:02,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,489 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 13:14:56] 2025-10-11 17:14:02,489 | INFO     | job 6838182184 has completed (purged errors)
[2025-10-11 13:14:56] 2025-10-11 17:14:02,489 | INFO     | overall cleanup function is called
[2025-10-11 13:14:56] 2025-10-11 17:14:03,497 | INFO     | --- collectZombieJob: --- 10, [28998]
[2025-10-11 13:14:56] 2025-10-11 17:14:03,497 | INFO     | zombie collector waiting for pid 28998
[2025-10-11 13:14:56] 2025-10-11 17:14:03,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 13:14:56] 2025-10-11 17:14:03,498 | INFO     | collected zombie processes
[2025-10-11 13:14:56] 2025-10-11 17:14:03,498 | INFO     | will attempt to kill all subprocesses of pid=28998
[2025-10-11 13:14:56] 2025-10-11 17:14:03,598 | INFO     | process IDs to be killed: [28998] (in reverse order)
[2025-10-11 13:14:56] 2025-10-11 17:14:03,650 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 13:14:56] 2025-10-11 17:14:03,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 13:14:56] 2025-10-11 17:14:03,654 | INFO     | did not find any defunct processes belonging to 28998
[2025-10-11 13:14:56] 2025-10-11 17:14:03,657 | INFO     | did not find any defunct processes belonging to 28998
[2025-10-11 13:14:56] 2025-10-11 17:14:03,657 | INFO     | ready for new job
[2025-10-11 13:14:56] 2025-10-11 17:14:03,657 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 13:14:56] 2025-10-11 17:14:03,658 | INFO     | ***************************************
[2025-10-11 13:14:56] 2025-10-11 17:14:03,659 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 13:14:56] 2025-10-11 17:14:03,659 | INFO     | ***************************************
[2025-10-11 13:14:56] 2025-10-11 17:14:03,659 | INFO     | 
[2025-10-11 13:14:56] 2025-10-11 17:14:03,660 | INFO     | architecture information:
[2025-10-11 13:14:56] 2025-10-11 17:14:03,660 | INFO     | executing command: cat /etc/os-release
[2025-10-11 13:14:56] 2025-10-11 17:14:03,675 | INFO     | cat /etc/os-release:
[2025-10-11 13:14:56] NAME="CentOS Linux"
[2025-10-11 13:14:56] VERSION="7 (Core)"
[2025-10-11 13:14:56] ID="centos"
[2025-10-11 13:14:56] ID_LIKE="rhel fedora"
[2025-10-11 13:14:56] VERSION_ID="7"
[2025-10-11 13:14:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 13:14:56] ANSI_COLOR="0;31"
[2025-10-11 13:14:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 13:14:56] HOME_URL="https://www.centos.org/"
[2025-10-11 13:14:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 13:14:56] 
[2025-10-11 13:14:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 13:14:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 13:14:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 13:14:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 13:14:56] 
[2025-10-11 13:14:56] 2025-10-11 17:14:03,675 | INFO     | ***************************************
[2025-10-11 13:14:56] 2025-10-11 17:14:04,177 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 13:14:56] 2025-10-11 17:14:04,194 | INFO     | sufficient remaining disk space (29364322304 B)
[2025-10-11 13:14:56] 2025-10-11 17:14:04,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 13:14:56] 2025-10-11 17:14:04,194 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 13:14:56] 2025-10-11 17:14:04,195 | INFO     | update_server=False
[2025-10-11 13:14:56] 2025-10-11 17:14:04,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 13:14:56] 2025-10-11 17:14:04,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:14:56] 2025-10-11 17:14:04,195 | INFO     | aborting loop
[2025-10-11 13:14:56] 2025-10-11 17:14:04,382 | INFO     | all payload control threads have been joined
[2025-10-11 13:14:56] 2025-10-11 17:14:04,388 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 13:14:56] 2025-10-11 17:14:04,569 | INFO     | all job control threads have been joined
[2025-10-11 13:14:56] 2025-10-11 17:14:05,009 | INFO     | all data control threads have been joined
[2025-10-11 13:14:56] 2025-10-11 17:14:05,200 | INFO     | [job] retrieve thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:05,201 | INFO     | [job] job monitor thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:05,387 | INFO     | [payload] control thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:05,406 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:05,575 | INFO     | [job] control thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:05,652 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:05,668 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:06,015 | INFO     | [data] control thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:06,027 | INFO     | [data] copytool_in thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:06,394 | INFO     | [data] copytool_out thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:06,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 13:14:56] 2025-10-11 17:14:06,545 | INFO     | [payload] validate_post thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:06,594 | INFO     | [job] validate thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:06,741 | INFO     | [payload] failed_post thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:07,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:14:56] 2025-10-11 17:14:08,200 | INFO     | [job] queue monitor thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:10,519 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:15,002 | INFO     | job.realtimelogging is not enabled
[2025-10-11 13:14:56] 2025-10-11 17:14:16,008 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 13:14:56] 2025-10-11 17:14:34,179 | INFO     | PID=22448 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 13:14:56] 2025-10-11 17:14:34,180 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 13:14:56] 2025-10-11 17:14:34,180 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 13:14:56] 2025-10-11 17:14:34,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 13:14:56] 2025-10-11 17:14:39,768 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-11 13:14:56] 2025-10-11 17:14:49,530 | INFO     | [monitor] cgroup control has ended
[2025-10-11 13:14:56] 2025-10-11 17:14:50,718 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140509455140672)>', '<ExcThread(monitor, started 140509007816448)>']
[2025-10-11 13:14:56] 2025-10-11 17:14:51,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 13:14:56] 2025-10-11 17:14:51,267 | INFO     | [monitor] control thread has ended
[2025-10-11 13:14:56] 2025-10-11 17:14:55,743 | INFO     | all workflow threads have been joined
[2025-10-11 13:14:56] 2025-10-11 17:14:55,744 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 13:14:56] 2025-10-11 17:14:55,744 | INFO     | traces error code: 0
[2025-10-11 13:14:56] 2025-10-11 17:14:55,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 13:14:56] 2025-10-11 17:14:55,824 [wrapper] ==== pilot stdout END ====
[2025-10-11 13:14:56] 2025-10-11 17:14:55,828 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 13:14:56] 2025-10-11 17:14:55,832 [wrapper] pilotpid: 22448
[2025-10-11 13:14:56] 2025-10-11 17:14:55,836 [wrapper] Pilot exit status: 0
[2025-10-11 13:14:56] 2025-10-11 17:14:55,852 [wrapper] pandaids: 6838182184
[2025-10-11 13:14:56] 2025-10-11 17:14:55,898 [wrapper] cleanup supervisor_pilot 25155 22449
[2025-10-11 13:14:56] 2025-10-11 17:14:55,902 [wrapper] Test setup, not cleaning
[2025-10-11 13:14:56] 2025-10-11 17:14:55,906 [wrapper] apfmon messages muted
[2025-10-11 13:14:56] 2025-10-11 17:14:55,910 [wrapper] ==== wrapper stdout END ====
[2025-10-11 13:14:56] 2025-10-11 17:14:55,913 [wrapper] ==== wrapper stderr END ====
[2025-10-11 13:14:56]  *** Error codes and diagnostics ***
[2025-10-11 13:14:56]     "exeErrorCode": 0,
[2025-10-11 13:14:56]     "exeErrorDiag": "",
[2025-10-11 13:14:56]     "pilotErrorCode": 0,
[2025-10-11 13:14:56]     "pilotErrorDiag": "",
[2025-10-11 13:14:56]  *** Listing of results directory ***
[2025-10-11 13:14:56] total 411116
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 02:35 pilot3.tar.gz
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 02:58 queuedata.json
[2025-10-11 13:14:56] -rwx------ 1 boincer umatlas     36292 Oct 11 02:58 runpilot2-wrapper.sh
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas       100 Oct 11 11:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 13:14:56] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 11:59 run_atlas
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas       105 Oct 11 11:59 job.xml
[2025-10-11 13:14:56] -rw-r--r-- 2 boincer umatlas 222414344 Oct 11 11:59 EVNT.46676267._002138.pool.root.1
[2025-10-11 13:14:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 11:59 start_atlas.sh
[2025-10-11 13:14:56] drwxrwx--x 2 boincer umatlas      4096 Oct 11 11:59 shared
[2025-10-11 13:14:56] -rw-r--r-- 2 boincer umatlas    569680 Oct 11 11:59 input.tar.gz
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas         0 Oct 11 11:59 boinc_lockfile
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 11:59 pandaJob.out
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas    975512 Oct 11 11:59 agis_schedconf.cvmfs.json
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas   1560580 Oct 11 11:59 agis_ddmendpoints.agis.ALL.json
[2025-10-11 13:14:56] drwx------ 5 boincer umatlas      4096 Oct 11 11:59 pilot3
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas      5953 Oct 11 13:10 init_data.xml
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas 192612600 Oct 11 13:13 HITS.46676269._053254.pool.root.1
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas       530 Oct 11 13:13 boinc_task_state.xml
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas        95 Oct 11 13:13 pilot_heartbeat.json
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas      1050 Oct 11 13:13 memory_monitor_summary.json
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas    377925 Oct 11 13:13 log.46676269._053254.job.log.tgz.1
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas      7852 Oct 11 13:14 heartbeat.json
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 13:14 boinc_mmap_file
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas        27 Oct 11 13:14 wrapper_checkpoint.txt
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas      4818 Oct 11 13:14 pilotlog.txt
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas    648767 Oct 11 13:14 log.46676269._053254.job.log.1
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas       357 Oct 11 13:14 output.list
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas       620 Oct 11 13:14 runtime_log
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas   1044480 Oct 11 13:14 result.tar.gz
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 13:14 runtime_log.err
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas       659 Oct 11 13:14 1xWMDmqjiR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqifNDmiBXbMo.diag
[2025-10-11 13:14:56] -rw-r--r-- 1 boincer umatlas     22074 Oct 11 13:14 stderr.txt
[2025-10-11 13:14:56] HITS file was successfully produced:
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas 192612600 Oct 11 13:13 shared/HITS.pool.root.1
[2025-10-11 13:14:56]  *** Contents of shared directory: ***
[2025-10-11 13:14:56] total 406904
[2025-10-11 13:14:56] -rw-r--r-- 2 boincer umatlas 222414344 Oct 11 11:59 ATLAS.root_0
[2025-10-11 13:14:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 11:59 start_atlas.sh
[2025-10-11 13:14:56] -rw-r--r-- 2 boincer umatlas    569680 Oct 11 11:59 input.tar.gz
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas 192612600 Oct 11 13:13 HITS.pool.root.1
[2025-10-11 13:14:56] -rw------- 1 boincer umatlas   1044480 Oct 11 13:14 result.tar.gz
13:14:57 (18772): run_atlas exited; CPU time 47586.196240
13:14:57 (18772): called boinc_finish(0)

</stderr_txt>
]]>

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