Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:09:04 (25986): wrapper (7.7.26015): starting
09:09:04 (25986): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 09:09:04] Arguments: --nthreads 12
[2025-10-11 09:09:04] Threads: 12
[2025-10-11 09:09:04] Checking for CVMFS
[2025-10-11 09:09:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 09:09:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 09:09:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 09:09:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 09:09:06] 2.11.5.0 2579 30276 235748 151589 2 669 39456092 45568000 20953 130560 0 307195165 99.868 131226279 26571 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-11 09:09:06] CVMFS is ok
[2025-10-11 09:09:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 09:09:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 09:09:06] Further information can be found at the LHC@home message board.
[2025-10-11 09:09:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 09:09:06] Checking for apptainer binary...
[2025-10-11 09:09:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 09:09:06] Running /usr/bin/apptainer --version
[2025-10-11 09:09:06] apptainer version 1.4.1-1.el9
[2025-10-11 09:09:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 09:09:07] wns0061.triumf.lcg
[2025-10-11 09:09:07] apptainer works
[2025-10-11 09:09:07] Set ATHENA_PROC_NUMBER=12
[2025-10-11 09:09:07] Set ATHENA_CORE_NUMBER=12
[2025-10-11 09:09:07] Starting ATLAS job with PandaID=6838452493
[2025-10-11 09:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 09:13:53]  *** The last 200 lines of the pilot log: ***
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | WARNING  | wrong length of table data, x=[1760199042.0], y=[2315.0] (must be same and length>=4)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | could have reported an average CPU frequency of 2637 MHz (4 samples)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | ..............................
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . Timing measurements:
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . get job = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . initial setup = 3 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . payload setup = 13 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . stage-in = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . payload execution = 42 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . stage-out = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . log creation = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | ..............................
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838452493/pilotlog.txt
[2025-10-11 09:13:53] 2025-10-11 16:13:21,475 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-11 09:13:53] - Log from pilotlog.txt -
[2025-10-11 09:13:53] 2025-10-11 16:13:21,450 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838452493/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | INFO     | extracted standard info from prmon json
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | WARNING  | wrong length of table data, x=[1760199042.0], y=[2315.0] (must be same and length>=4)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | could have reported an average CPU frequency of 2637 MHz (4 samples)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | ..............................
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . Timing measurements:
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . get job = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . initial setup = 3 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . payload setup = 13 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . stage-in = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . payload execution = 42 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . stage-out = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . log creation = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | ..............................
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838452493/pilotlog.txt
[2025-10-11 09:13:53] 2025-10-11 16:13:21,476 | WARNING  | 
[2025-10-11 09:13:53] [begin log extracts]
[2025-10-11 09:13:53] - Log from pilotlog.txt -
[2025-10-11 09:13:53] 2025-10-11 16:13:21,450 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838452493/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | INFO     | extracted standard info from prmon json
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 09:13:53] 2025-10-11 16:13:21,453 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | WARNING  | wrong length of table data, x=[1760199042.0], y=[2315.0] (must be same and length>=4)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | could have reported an average CPU frequency of 2637 MHz (4 samples)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | ..............................
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . Timing measurements:
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . get job = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . initial setup = 3 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,454 | INFO     | . payload setup = 13 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . stage-in = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . payload execution = 42 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . stage-out = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | . log creation = 0 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | ..............................
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 09:13:53] 2025-10-11 16:13:21,456 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838452493/pilotlog.txt
[2025-10-11 09:13:53] [end log extracts]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,476 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,476 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | 
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | job summary report
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | --------------------------------------------------
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | PanDA job id: 6838452493
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | task id: 46676269
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-11 09:11:05,031 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | pilot state: failed 
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | transexitcode: 65
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | exeerrorcode: 65
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | exitcode: 65
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | cpuconsumptiontime: 18 s
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | nevents: 0
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | neventsw: 0
[2025-10-11 09:13:53] 2025-10-11 16:13:21,930 | INFO     | pid: 38556
[2025-10-11 09:13:53] 2025-10-11 16:13:21,931 | INFO     | pgrp: 38556
[2025-10-11 09:13:53] 2025-10-11 16:13:21,931 | INFO     | corecount: 12
[2025-10-11 09:13:53] 2025-10-11 16:13:21,931 | INFO     | event service: False
[2025-10-11 09:13:53] 2025-10-11 16:13:21,931 | INFO     | sizes: {0: 2348683, 1: 2348882, 12: 2348882, 19: 2349172, 23: 2349200, 59: 2372400, 60: 2376824, 61: 2376824, 187: 2376990}
[2025-10-11 09:13:53] 2025-10-11 16:13:21,931 | INFO     | --------------------------------------------------
[2025-10-11 09:13:53] 2025-10-11 16:13:21,931 | INFO     | 
[2025-10-11 09:13:53] 2025-10-11 16:13:21,931 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-11 09:13:53] 2025-10-11 16:13:21,958 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,960 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,960 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,960 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 09:13:53] 2025-10-11 16:13:21,960 | INFO     | job 6838452493 has completed (purged errors)
[2025-10-11 09:13:53] 2025-10-11 16:13:21,960 | INFO     | overall cleanup function is called
[2025-10-11 09:13:53] 2025-10-11 16:13:22,966 | INFO     | --- collectZombieJob: --- 10, [38556]
[2025-10-11 09:13:53] 2025-10-11 16:13:22,967 | INFO     | zombie collector waiting for pid 38556
[2025-10-11 09:13:53] 2025-10-11 16:13:22,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 09:13:53] 2025-10-11 16:13:22,967 | INFO     | collected zombie processes
[2025-10-11 09:13:53] 2025-10-11 16:13:22,967 | INFO     | will attempt to kill all subprocesses of pid=38556
[2025-10-11 09:13:53] 2025-10-11 16:13:23,199 | INFO     | process IDs to be killed: [38556] (in reverse order)
[2025-10-11 09:13:53] 2025-10-11 16:13:23,283 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 09:13:53] 2025-10-11 16:13:23,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 09:13:53] 2025-10-11 16:13:23,293 | INFO     | did not find any defunct processes belonging to 38556
[2025-10-11 09:13:53] 2025-10-11 16:13:23,301 | INFO     | did not find any defunct processes belonging to 38556
[2025-10-11 09:13:53] 2025-10-11 16:13:23,302 | INFO     | ready for new job
[2025-10-11 09:13:53] 2025-10-11 16:13:23,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 09:13:53] 2025-10-11 16:13:23,303 | INFO     | ***************************************
[2025-10-11 09:13:53] 2025-10-11 16:13:23,303 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 09:13:53] 2025-10-11 16:13:23,303 | INFO     | ***************************************
[2025-10-11 09:13:53] 2025-10-11 16:13:23,303 | INFO     | 
[2025-10-11 09:13:53] 2025-10-11 16:13:23,305 | INFO     | architecture information:
[2025-10-11 09:13:53] 2025-10-11 16:13:23,306 | INFO     | executing command: cat /etc/os-release
[2025-10-11 09:13:53] 2025-10-11 16:13:23,320 | INFO     | cat /etc/os-release:
[2025-10-11 09:13:53] NAME="CentOS Linux"
[2025-10-11 09:13:53] VERSION="7 (Core)"
[2025-10-11 09:13:53] ID="centos"
[2025-10-11 09:13:53] ID_LIKE="rhel fedora"
[2025-10-11 09:13:53] VERSION_ID="7"
[2025-10-11 09:13:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 09:13:53] ANSI_COLOR="0;31"
[2025-10-11 09:13:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 09:13:53] HOME_URL="https://www.centos.org/"
[2025-10-11 09:13:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 09:13:53] 
[2025-10-11 09:13:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 09:13:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 09:13:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 09:13:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 09:13:53] 
[2025-10-11 09:13:53] 2025-10-11 16:13:23,320 | INFO     | ***************************************
[2025-10-11 09:13:53] 2025-10-11 16:13:23,823 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-11 09:13:53] 2025-10-11 16:13:23,840 | INFO     | sufficient remaining disk space (1930310975488 B)
[2025-10-11 09:13:53] 2025-10-11 16:13:23,840 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 09:13:53] 2025-10-11 16:13:23,840 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 09:13:53] 2025-10-11 16:13:23,840 | INFO     | update_server=False
[2025-10-11 09:13:53] 2025-10-11 16:13:23,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 09:13:53] 2025-10-11 16:13:23,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 09:13:53] 2025-10-11 16:13:24,289 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:13:53] 2025-10-11 16:13:24,289 | INFO     | aborting loop
[2025-10-11 09:13:53] 2025-10-11 16:13:24,453 | INFO     | all data control threads have been joined
[2025-10-11 09:13:53] 2025-10-11 16:13:24,723 | INFO     | all payload control threads have been joined
[2025-10-11 09:13:53] 2025-10-11 16:13:24,846 | INFO     | [job] retrieve thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:24,918 | INFO     | all job control threads have been joined
[2025-10-11 09:13:53] 2025-10-11 16:13:25,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 09:13:53] 2025-10-11 16:13:25,136 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,301 | INFO     | [job] job monitor thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,458 | INFO     | [data] control thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,728 | INFO     | [payload] control thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,745 | INFO     | [job] validate thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,891 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,894 | INFO     | [payload] validate_post thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:25,923 | INFO     | [job] control thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:26,115 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:26,239 | INFO     | [data] copytool_in thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:26,425 | INFO     | [payload] failed_post thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:26,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:13:53] 2025-10-11 16:13:27,031 | INFO     | [data] copytool_out thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:27,558 | INFO     | [job] queue monitor thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:27,859 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 09:13:53] 2025-10-11 16:13:33,510 | INFO     | [monitor] cgroup control has ended
[2025-10-11 09:13:53] 2025-10-11 16:13:35,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495539291968)>', '<ExcThread(monitor, started 140494998849280)>']
[2025-10-11 09:13:53] 2025-10-11 16:13:40,619 | INFO     | all workflow threads have been joined
[2025-10-11 09:13:53] 2025-10-11 16:13:40,620 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 09:13:53] 2025-10-11 16:13:40,620 | INFO     | traces error code: 0
[2025-10-11 09:13:53] 2025-10-11 16:13:40,620 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 09:13:53] 2025-10-11 16:13:53,308 | INFO     | PID=31595 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 09:13:53] 2025-10-11 16:13:53,308 | INFO     | .. there are 35 such processes running
[2025-10-11 09:13:53] 2025-10-11 16:13:53,309 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 09:13:53] 2025-10-11 16:13:53,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 09:13:53] 2025-10-11 16:13:53,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 09:13:53] 2025-10-11 16:13:53,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 09:13:53] 2025-10-11 16:13:53,309 | CRITICAL | thread 'MainThread' is not alive
[2025-10-11 09:13:53] 2025-10-11 16:13:53,309 | INFO     | [monitor] control thread has ended
[2025-10-11 09:13:53] 2025-10-11 16:13:53,485 [wrapper] ==== pilot stdout END ====
[2025-10-11 09:13:53] 2025-10-11 16:13:53,496 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 09:13:53] 2025-10-11 16:13:53,498 [wrapper] pilotpid: 31595
[2025-10-11 09:13:53] 2025-10-11 16:13:53,501 [wrapper] Pilot exit status: 0
[2025-10-11 09:13:53] 2025-10-11 16:13:53,521 [wrapper] pandaids: 6838452493
[2025-10-11 09:13:53] 2025-10-11 16:13:53,596 [wrapper] cleanup supervisor_pilot   31601 31596
[2025-10-11 09:13:53] 2025-10-11 16:13:53,599 [wrapper] Test setup, not cleaning
[2025-10-11 09:13:53] 2025-10-11 16:13:53,603 [wrapper] apfmon messages muted
[2025-10-11 09:13:53] 2025-10-11 16:13:53,605 [wrapper] ==== wrapper stdout END ====
[2025-10-11 09:13:53] 2025-10-11 16:13:53,609 [wrapper] ==== wrapper stderr END ====
[2025-10-11 09:13:53]  *** Error codes and diagnostics ***
[2025-10-11 09:13:53]     "exeErrorCode": 65,
[2025-10-11 09:13:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 09:13:53]     "pilotErrorCode": 1305,
[2025-10-11 09:13:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 09:13:53]  *** Listing of results directory ***
[2025-10-11 09:13:53] total 218452
[2025-10-11 09:13:53] -rwx------. 1 boinc boinc     36292 Oct 11 06:40 runpilot2-wrapper.sh
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc      5112 Oct 11 06:40 queuedata.json
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc    557409 Oct 11 06:40 pilot3.tar.gz
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc       100 Oct 11 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 09:13:53] -rwxr-xr-x. 1 boinc boinc      7986 Oct 11 09:09 run_atlas
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc       105 Oct 11 09:09 job.xml
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc      6594 Oct 11 09:09 init_data.xml
[2025-10-11 09:13:53] -rw-r--r--. 2 boinc boinc 219565661 Oct 11 09:09 EVNT.46676267._002345.pool.root.1
[2025-10-11 09:13:53] -rw-r--r--. 2 boinc boinc     15120 Oct 11 09:09 start_atlas.sh
[2025-10-11 09:13:53] drwxrwx--x. 2 boinc boinc      4096 Oct 11 09:09 shared
[2025-10-11 09:13:53] -rw-r--r--. 2 boinc boinc    569674 Oct 11 09:09 input.tar.gz
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc         0 Oct 11 09:09 boinc_lockfile
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc      2550 Oct 11 09:09 pandaJob.out
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc    975512 Oct 11 09:09 agis_schedconf.cvmfs.json
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc   1560580 Oct 11 09:09 agis_ddmendpoints.agis.ALL.json
[2025-10-11 09:13:53] drwx------. 5 boinc boinc      4096 Oct 11 09:09 pilot3
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc       523 Oct 11 09:11 boinc_task_state.xml
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc       947 Oct 11 09:11 memory_monitor_summary.json
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc     21766 Oct 11 09:11 log.46676269._058495.job.log.tgz.1
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc      8386 Oct 11 09:13 heartbeat.json
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc      8192 Oct 11 09:13 boinc_mmap_file
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc        22 Oct 11 09:13 wrapper_checkpoint.txt
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc       891 Oct 11 09:13 pilotlog.txt
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc        95 Oct 11 09:13 pilot_heartbeat.json
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc     90281 Oct 11 09:13 log.46676269._058495.job.log.1
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc       188 Oct 11 09:13 output.list
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc       620 Oct 11 09:13 runtime_log
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc    133120 Oct 11 09:13 result.tar.gz
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc      8528 Oct 11 09:13 runtime_log.err
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc       644 Oct 11 09:13 0mPODmx0oR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3yRMDm4nqW7n.diag
[2025-10-11 09:13:53] -rw-r--r--. 1 boinc boinc     21772 Oct 11 09:13 stderr.txt
[2025-10-11 09:13:53] No HITS result produced
[2025-10-11 09:13:53]  *** Contents of shared directory: ***
[2025-10-11 09:13:53] total 215132
[2025-10-11 09:13:53] -rw-r--r--. 2 boinc boinc 219565661 Oct 11 09:09 ATLAS.root_0
[2025-10-11 09:13:53] -rw-r--r--. 2 boinc boinc     15120 Oct 11 09:09 start_atlas.sh
[2025-10-11 09:13:53] -rw-r--r--. 2 boinc boinc    569674 Oct 11 09:09 input.tar.gz
[2025-10-11 09:13:53] -rw-------. 1 boinc boinc    133120 Oct 11 09:13 result.tar.gz
09:13:55 (25986): run_atlas exited; CPU time 27.200480
09:13:55 (25986): called boinc_finish(0)

</stderr_txt>
]]>

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