Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:02:56 (25125): wrapper (7.7.26015): starting
12:02:56 (25125): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 12:02:56] Arguments: --nthreads 12
[2025-10-11 12:02:56] Threads: 12
[2025-10-11 12:02:56] Checking for CVMFS
[2025-10-11 12:02:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:02:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:02:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:02:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:02:57] 2.11.2.0 2924 221610 103456 151589 2 57 14107735 20275200 1 130560 4 108684704 99.984 13752181 12927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 12:02:57] CVMFS is ok
[2025-10-11 12:02:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:02:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:02:57] Further information can be found at the LHC@home message board.
[2025-10-11 12:02:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:02:57] Checking for apptainer binary...
[2025-10-11 12:02:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:02:57] Running /usr/bin/apptainer --version
[2025-10-11 12:02:57] apptainer version 1.3.2-1.el7
[2025-10-11 12:02:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:02:58] c-205-28.aglt2.org
[2025-10-11 12:02:58] apptainer works
[2025-10-11 12:02:58] Set ATHENA_PROC_NUMBER=12
[2025-10-11 12:02:58] Set ATHENA_CORE_NUMBER=12
[2025-10-11 12:02:58] Starting ATLAS job with PandaID=6833156142
[2025-10-11 12:02:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 13:07:25]  *** The last 200 lines of the pilot log: ***
[2025-10-11 13:07:25] 2025-10-11 17:06:25,858 | INFO     |  -- lfn=log.46376905._122859.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 13:07:25] 2025-10-11 17:06:25,859 | INFO     | stage-out finished correctly
[2025-10-11 13:07:25] 2025-10-11 17:06:26,575 | INFO     | time since job start (3793s) is within the limit (172800.0s)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,198 | WARNING  | process 2989 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 13:07:25] 2025-10-11 17:06:27,198 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833156142/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,202 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833156142/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,204 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3998591 B
[2025-10-11 13:07:25] 2025-10-11 17:06:27,204 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15544 B
[2025-10-11 13:07:25] 2025-10-11 17:06:27,205 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 13:07:25] 2025-10-11 17:06:27,221 | INFO     | sufficient remaining disk space (29385293824 B)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,222 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,222 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6833156142: 4292153 B (within 2537553920 B limit)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,223 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6833156142/HITS.46376905._122859.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,223 | INFO     | total size of present files: 0 B (workdir size: 4292153 B)
[2025-10-11 13:07:25] 2025-10-11 17:06:27,223 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6833156142/HITS.46376905._122859.pool.root.1 since it does not exist
[2025-10-11 13:07:25] 2025-10-11 17:06:27,316 | INFO     | number of running child processes to parent process 2989: 1
[2025-10-11 13:07:25] 2025-10-11 17:06:27,316 | INFO     | maximum number of monitored processes: 6
[2025-10-11 13:07:25] 2025-10-11 17:06:28,581 | INFO     | time since job start (3795s) is within the limit (172800.0s)
[2025-10-11 13:07:25] 2025-10-11 17:06:28,713 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 13:07:25] 2025-10-11 17:06:29,819 | INFO     | monitor loop #285: job 0:6833156142 is in state 'finished'
[2025-10-11 13:07:25] 2025-10-11 17:06:29,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:07:25] 2025-10-11 17:06:30,586 | INFO     | time since job start (3797s) is within the limit (172800.0s)
[2025-10-11 13:07:25] 2025-10-11 17:06:30,792 | INFO     | job 6833156142 has state=finished
[2025-10-11 13:07:25] 2025-10-11 17:06:30,792 | INFO     | preparing for final server update for job 6833156142 in state='finished'
[2025-10-11 13:07:25] 2025-10-11 17:06:30,793 | INFO     | this job has now completed (state=finished)
[2025-10-11 13:07:25] 2025-10-11 17:06:30,793 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 13:07:25] 2025-10-11 17:06:30,793 | INFO     | log transfer has been attempted: DONE
[2025-10-11 13:07:25] 2025-10-11 17:06:30,794 | INFO     | job 6833156142 has finished - writing final server update
[2025-10-11 13:07:25] 2025-10-11 17:06:30,794 | INFO     | total number of processed events: 400 (read)
[2025-10-11 13:07:25] 2025-10-11 17:06:30,795 | INFO     | executing command: lscpu
[2025-10-11 13:07:25] 2025-10-11 17:06:30,821 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 13:07:25] 2025-10-11 17:06:32,322 | INFO     | monitor loop #286: job 0:6833156142 is in state 'finished'
[2025-10-11 13:07:25] 2025-10-11 17:06:32,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:07:25] 2025-10-11 17:06:32,591 | INFO     | time since job start (3799s) is within the limit (172800.0s)
[2025-10-11 13:07:25] 2025-10-11 17:06:34,594 | INFO     | time since job start (3801s) is within the limit (172800.0s)
[2025-10-11 13:07:25] 2025-10-11 17:06:34,825 | INFO     | monitor loop #287: job 0:6833156142 is in state 'finished'
[2025-10-11 13:07:25] 2025-10-11 17:06:34,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:07:25] 2025-10-11 17:06:35,489 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 13:07:25] 2025-10-11 17:06:35,493 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-11 13:07:25] 2025-10-11 17:06:35,495 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833156142/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:07:25] 2025-10-11 17:06:35,496 | INFO     | extracted standard info from prmon json
[2025-10-11 13:07:25] 2025-10-11 17:06:35,496 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 13:07:25] 2025-10-11 17:06:35,496 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 13:07:25] 2025-10-11 17:06:35,496 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 13:07:25] 2025-10-11 17:06:35,497 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 13:07:25] 2025-10-11 17:06:35,498 | INFO     | fitting pss+swap vs Time
[2025-10-11 13:07:25] 2025-10-11 17:06:35,498 | INFO     | sum of square deviations: 51573060.0
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | sum of deviations: -1363957315.9999998
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | mean x: 1760200574.0
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | mean y: 2684480.963636364
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | -- intersect: 46554865998.49816
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | intersect: 46554865998.49816
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | chi2: 0.03321291514982267
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | -- intersect: 46554865998.49816
[2025-10-11 13:07:25] 2025-10-11 17:06:35,499 | INFO     | current memory leak: -26.45 B/s (using 55 data points, chi2=0.03)
[2025-10-11 13:07:25] 2025-10-11 17:06:35,500 | INFO     | could have reported an average CPU frequency of 1967 MHz (6 samples)
[2025-10-11 13:07:25] 2025-10-11 17:06:35,500 | INFO     | ..............................
[2025-10-11 13:07:25] 2025-10-11 17:06:35,500 | INFO     | . Timing measurements:
[2025-10-11 13:07:25] 2025-10-11 17:06:35,500 | INFO     | . get job = 0 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,500 | INFO     | . initial setup = 2 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,500 | INFO     | . payload setup = 7 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,500 | INFO     | . stage-in = 0 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,501 | INFO     | . payload execution = 3763 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,501 | INFO     | . stage-out = 0 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,501 | INFO     | . log creation = 0 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,501 | INFO     | ..............................
[2025-10-11 13:07:25] 2025-10-11 17:06:35,917 | INFO     | 
[2025-10-11 13:07:25] 2025-10-11 17:06:35,918 | INFO     | job summary report
[2025-10-11 13:07:25] 2025-10-11 17:06:35,918 | INFO     | --------------------------------------------------
[2025-10-11 13:07:25] 2025-10-11 17:06:35,918 | INFO     | PanDA job id: 6833156142
[2025-10-11 13:07:25] 2025-10-11 17:06:35,918 | INFO     | task id: 46376905
[2025-10-11 13:07:25] 2025-10-11 17:06:35,918 | INFO     | errors: (none)
[2025-10-11 13:07:25] 2025-10-11 17:06:35,918 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 13:07:25] 2025-10-11 17:06:35,919 | INFO     | pilot state: finished 
[2025-10-11 13:07:25] 2025-10-11 17:06:35,919 | INFO     | transexitcode: 0
[2025-10-11 13:07:25] 2025-10-11 17:06:35,919 | INFO     | exeerrorcode: 0
[2025-10-11 13:07:25] 2025-10-11 17:06:35,919 | INFO     | exeerrordiag: 
[2025-10-11 13:07:25] 2025-10-11 17:06:35,919 | INFO     | exitcode: 0
[2025-10-11 13:07:25] 2025-10-11 17:06:35,919 | INFO     | exitmsg: OK
[2025-10-11 13:07:25] 2025-10-11 17:06:35,920 | INFO     | cpuconsumptiontime: 40566 s
[2025-10-11 13:07:25] 2025-10-11 17:06:35,920 | INFO     | nevents: 400
[2025-10-11 13:07:25] 2025-10-11 17:06:35,920 | INFO     | neventsw: 0
[2025-10-11 13:07:25] 2025-10-11 17:06:35,920 | INFO     | pid: 2989
[2025-10-11 13:07:25] 2025-10-11 17:06:35,920 | INFO     | pgrp: 2989
[2025-10-11 13:07:25] 2025-10-11 17:06:35,920 | INFO     | corecount: 12
[2025-10-11 13:07:25] 2025-10-11 17:06:35,920 | INFO     | event service: False
[2025-10-11 13:07:25] 2025-10-11 17:06:35,921 | INFO     | sizes: {0: 2348649, 1: 2348848, 5: 2349110, 11: 2349166, 3774: 2374919, 3776: 2383917, 3779: 2384129, 3786: 2384323}
[2025-10-11 13:07:25] 2025-10-11 17:06:35,921 | INFO     | --------------------------------------------------
[2025-10-11 13:07:25] 2025-10-11 17:06:35,921 | INFO     | 
[2025-10-11 13:07:25] 2025-10-11 17:06:35,921 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 13:07:25] 2025-10-11 17:06:35,946 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 13:07:25] 2025-10-11 17:06:35,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 13:07:25] 2025-10-11 17:06:35,949 | INFO     | job 6833156142 has completed (purged errors)
[2025-10-11 13:07:25] 2025-10-11 17:06:35,949 | INFO     | overall cleanup function is called
[2025-10-11 13:07:25] 2025-10-11 17:06:36,958 | INFO     | --- collectZombieJob: --- 10, [2989]
[2025-10-11 13:07:25] 2025-10-11 17:06:36,958 | INFO     | zombie collector waiting for pid 2989
[2025-10-11 13:07:25] 2025-10-11 17:06:36,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 13:07:25] 2025-10-11 17:06:36,959 | INFO     | collected zombie processes
[2025-10-11 13:07:25] 2025-10-11 17:06:36,959 | INFO     | will attempt to kill all subprocesses of pid=2989
[2025-10-11 13:07:25] 2025-10-11 17:06:37,050 | INFO     | process IDs to be killed: [2989] (in reverse order)
[2025-10-11 13:07:25] 2025-10-11 17:06:37,101 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 13:07:25] 2025-10-11 17:06:37,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 13:07:25] 2025-10-11 17:06:37,105 | INFO     | did not find any defunct processes belonging to 2989
[2025-10-11 13:07:25] 2025-10-11 17:06:37,107 | INFO     | did not find any defunct processes belonging to 2989
[2025-10-11 13:07:25] 2025-10-11 17:06:37,107 | INFO     | ready for new job
[2025-10-11 13:07:25] 2025-10-11 17:06:37,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 13:07:25] 2025-10-11 17:06:37,109 | INFO     | ***************************************
[2025-10-11 13:07:25] 2025-10-11 17:06:37,109 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-11 13:07:25] 2025-10-11 17:06:37,109 | INFO     | ***************************************
[2025-10-11 13:07:25] 2025-10-11 17:06:37,109 | INFO     | 
[2025-10-11 13:07:25] 2025-10-11 17:06:37,110 | INFO     | architecture information:
[2025-10-11 13:07:25] 2025-10-11 17:06:37,110 | INFO     | executing command: cat /etc/os-release
[2025-10-11 13:07:25] 2025-10-11 17:06:37,126 | INFO     | cat /etc/os-release:
[2025-10-11 13:07:25] NAME="CentOS Linux"
[2025-10-11 13:07:25] VERSION="7 (Core)"
[2025-10-11 13:07:25] ID="centos"
[2025-10-11 13:07:25] ID_LIKE="rhel fedora"
[2025-10-11 13:07:25] VERSION_ID="7"
[2025-10-11 13:07:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 13:07:25] ANSI_COLOR="0;31"
[2025-10-11 13:07:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 13:07:25] HOME_URL="https://www.centos.org/"
[2025-10-11 13:07:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 13:07:25] 
[2025-10-11 13:07:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 13:07:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 13:07:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 13:07:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 13:07:25] 
[2025-10-11 13:07:25] 2025-10-11 17:06:37,126 | INFO     | ***************************************
[2025-10-11 13:07:25] 2025-10-11 17:06:37,629 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 13:07:25] 2025-10-11 17:06:37,646 | INFO     | sufficient remaining disk space (29389488128 B)
[2025-10-11 13:07:25] 2025-10-11 17:06:37,647 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 13:07:25] 2025-10-11 17:06:37,647 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 13:07:25] 2025-10-11 17:06:37,647 | INFO     | update_server=False
[2025-10-11 13:07:25] 2025-10-11 17:06:37,647 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 13:07:25] 2025-10-11 17:06:37,864 | INFO     | all job control threads have been joined
[2025-10-11 13:07:25] 2025-10-11 17:06:38,191 | INFO     | all data control threads have been joined
[2025-10-11 13:07:25] 2025-10-11 17:06:38,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:07:25] 2025-10-11 17:06:38,331 | INFO     | aborting loop
[2025-10-11 13:07:25] 2025-10-11 17:06:38,653 | INFO     | [job] retrieve thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:38,683 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:38,683 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:38,870 | INFO     | [job] control thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:38,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 13:07:25] 2025-10-11 17:06:39,040 | INFO     | all payload control threads have been joined
[2025-10-11 13:07:25] 2025-10-11 17:06:39,100 | INFO     | [payload] failed_post thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:39,197 | INFO     | [data] control thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:39,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 13:07:25] 2025-10-11 17:06:39,337 | INFO     | [job] job monitor thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:39,359 | INFO     | [data] copytool_in thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:39,668 | INFO     | [job] validate thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:39,711 | INFO     | [payload] validate_post thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:39,824 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:40,046 | INFO     | [payload] control thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:40,147 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:40,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:07:25] 2025-10-11 17:06:40,964 | INFO     | [data] copytool_out thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:41,599 | INFO     | [job] queue monitor thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:06:43,319 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 13:07:25] 2025-10-11 17:07:07,796 | INFO     | PID=28901 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 13:07:25] 2025-10-11 17:07:07,797 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 13:07:25] 2025-10-11 17:07:07,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 13:07:25] 2025-10-11 17:07:07,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 13:07:25] 2025-10-11 17:07:19,391 | INFO     | [monitor] cgroup control has ended
[2025-10-11 13:07:25] 2025-10-11 17:07:19,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304931346240)>', '<ExcThread(monitor, started 140304350959360)>']
[2025-10-11 13:07:25] 2025-10-11 17:07:20,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 13:07:25] 2025-10-11 17:07:20,854 | INFO     | [monitor] control thread has ended
[2025-10-11 13:07:25] 2025-10-11 17:07:25,002 | INFO     | all workflow threads have been joined
[2025-10-11 13:07:25] 2025-10-11 17:07:25,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 13:07:25] 2025-10-11 17:07:25,022 | INFO     | traces error code: 0
[2025-10-11 13:07:25] 2025-10-11 17:07:25,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 13:07:25] 2025-10-11 17:07:25,132 [wrapper] ==== pilot stdout END ====
[2025-10-11 13:07:25] 2025-10-11 17:07:25,136 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 13:07:25] 2025-10-11 17:07:25,140 [wrapper] pilotpid: 28901
[2025-10-11 13:07:25] 2025-10-11 17:07:25,144 [wrapper] Pilot exit status: 0
[2025-10-11 13:07:25] 2025-10-11 17:07:25,159 [wrapper] pandaids: 6833156142
[2025-10-11 13:07:25] 2025-10-11 17:07:25,204 [wrapper] cleanup supervisor_pilot 14256 28902
[2025-10-11 13:07:25] 2025-10-11 17:07:25,208 [wrapper] Test setup, not cleaning
[2025-10-11 13:07:25] 2025-10-11 17:07:25,211 [wrapper] apfmon messages muted
[2025-10-11 13:07:25] 2025-10-11 17:07:25,215 [wrapper] ==== wrapper stdout END ====
[2025-10-11 13:07:25] 2025-10-11 17:07:25,218 [wrapper] ==== wrapper stderr END ====
[2025-10-11 13:07:25]  *** Error codes and diagnostics ***
[2025-10-11 13:07:25]     "exeErrorCode": 0,
[2025-10-11 13:07:25]     "exeErrorDiag": "",
[2025-10-11 13:07:25]     "pilotErrorCode": 0,
[2025-10-11 13:07:25]     "pilotErrorDiag": "",
[2025-10-11 13:07:25]  *** Listing of results directory ***
[2025-10-11 13:07:25] total 388768
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 19:44 pilot3.tar.gz
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 19:52 queuedata.json
[2025-10-11 13:07:25] -rwx------ 1 boincer umatlas     36292 Oct  6 19:52 runpilot2-wrapper.sh
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas       100 Oct 11 12:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 13:07:25] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 12:02 run_atlas
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas       105 Oct 11 12:02 job.xml
[2025-10-11 13:07:25] -rw-r--r-- 2 boincer umatlas 214263015 Oct 11 12:02 EVNT.46376901._004556.pool.root.1
[2025-10-11 13:07:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 12:02 start_atlas.sh
[2025-10-11 13:07:25] drwxrwx--x 2 boincer umatlas      4096 Oct 11 12:02 shared
[2025-10-11 13:07:25] -rw-r--r-- 2 boincer umatlas    565601 Oct 11 12:02 input.tar.gz
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas         0 Oct 11 12:02 boinc_lockfile
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas      2521 Oct 11 12:02 pandaJob.out
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas    975512 Oct 11 12:03 agis_schedconf.cvmfs.json
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas   1560580 Oct 11 12:03 agis_ddmendpoints.agis.ALL.json
[2025-10-11 13:07:25] drwx------ 4 boincer umatlas      4096 Oct 11 12:03 pilot3
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas      5952 Oct 11 13:04 init_data.xml
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas 178096278 Oct 11 13:05 HITS.46376905._122859.pool.root.1
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas       529 Oct 11 13:05 boinc_task_state.xml
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas      1050 Oct 11 13:06 memory_monitor_summary.json
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas    366491 Oct 11 13:06 log.46376905._122859.job.log.tgz.1
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas      7853 Oct 11 13:06 heartbeat.json
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 13:07 boinc_mmap_file
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas        27 Oct 11 13:07 wrapper_checkpoint.txt
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas        95 Oct 11 13:07 pilot_heartbeat.json
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas      4746 Oct 11 13:07 pilotlog.txt
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas    559433 Oct 11 13:07 log.46376905._122859.job.log.1
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas       357 Oct 11 13:07 output.list
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas       620 Oct 11 13:07 runtime_log
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas    942080 Oct 11 13:07 result.tar.gz
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 13:07 runtime_log.err
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas       659 Oct 11 13:07 Lh2KDmJBAQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1RKMDm0FIKqn.diag
[2025-10-11 13:07:25] -rw-r--r-- 1 boincer umatlas     22424 Oct 11 13:07 stderr.txt
[2025-10-11 13:07:25] HITS file was successfully produced:
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas 178096278 Oct 11 13:05 shared/HITS.pool.root.1
[2025-10-11 13:07:25]  *** Contents of shared directory: ***
[2025-10-11 13:07:25] total 384664
[2025-10-11 13:07:25] -rw-r--r-- 2 boincer umatlas 214263015 Oct 11 12:02 ATLAS.root_0
[2025-10-11 13:07:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 12:02 start_atlas.sh
[2025-10-11 13:07:25] -rw-r--r-- 2 boincer umatlas    565601 Oct 11 12:02 input.tar.gz
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas 178096278 Oct 11 13:05 HITS.pool.root.1
[2025-10-11 13:07:25] -rw------- 1 boincer umatlas    942080 Oct 11 13:07 result.tar.gz
13:07:26 (25125): run_atlas exited; CPU time 40535.144517
13:07:26 (25125): called boinc_finish(0)

</stderr_txt>
]]>

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