Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:01:23 (3406002): wrapper (7.7.26015): starting
04:01:23 (3406002): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 04:01:23] Arguments: --nthreads 3
[2025-10-12 04:01:23] Threads: 3
[2025-10-12 04:01:23] Checking for CVMFS
[2025-10-12 04:01:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:01:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:01:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:01:23] 2.9.2.0 2254445 3793 84952 151602 0 57 30090130 36864000 0 130560 0 3020083 99.991 126727 1008 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 04:01:23] CVMFS is ok
[2025-10-12 04:01:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:01:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:01:23] Further information can be found at the LHC@home message board.
[2025-10-12 04:01:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:01:23] Checking for apptainer binary...
[2025-10-12 04:01:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:01:23] Running /usr/bin/apptainer --version
[2025-10-12 04:01:23] apptainer version 1.4.1-1.1
[2025-10-12 04:01:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:01:23] atlasA230
[2025-10-12 04:01:23] apptainer works
[2025-10-12 04:01:23] Set ATHENA_PROC_NUMBER=3
[2025-10-12 04:01:23] Set ATHENA_CORE_NUMBER=3
[2025-10-12 04:01:23] Starting ATLAS job with PandaID=6832254106
[2025-10-12 04:01:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:14:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | job 6832254106 has completed (purged errors)
[2025-10-12 05:14:58] 2025-10-12 03:14:26,353 | INFO     | overall cleanup function is called
[2025-10-12 05:14:58] 2025-10-12 03:14:26,398 | INFO     | PID=3409717 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 05:14:58] 2025-10-12 03:14:27,356 | INFO     | --- collectZombieJob: --- 10, [3416160]
[2025-10-12 05:14:58] 2025-10-12 03:14:27,356 | INFO     | zombie collector waiting for pid 3416160
[2025-10-12 05:14:58] 2025-10-12 03:14:27,356 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:14:58] 2025-10-12 03:14:27,356 | INFO     | collected zombie processes
[2025-10-12 05:14:58] 2025-10-12 03:14:27,356 | INFO     | will attempt to kill all subprocesses of pid=3416160
[2025-10-12 05:14:58] 2025-10-12 03:14:27,398 | INFO     | process IDs to be killed: [3416160] (in reverse order)
[2025-10-12 05:14:58] 2025-10-12 03:14:27,422 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:14:58] 2025-10-12 03:14:27,422 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:14:58] 2025-10-12 03:14:27,424 | INFO     | did not find any defunct processes belonging to 3416160
[2025-10-12 05:14:58] 2025-10-12 03:14:27,425 | INFO     | did not find any defunct processes belonging to 3416160
[2025-10-12 05:14:58] 2025-10-12 03:14:27,425 | INFO     | ready for new job
[2025-10-12 05:14:58] 2025-10-12 03:14:27,425 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:14:58] 2025-10-12 03:14:27,426 | INFO     | ***************************************
[2025-10-12 05:14:58] 2025-10-12 03:14:27,426 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 05:14:58] 2025-10-12 03:14:27,426 | INFO     | ***************************************
[2025-10-12 05:14:58] 2025-10-12 03:14:27,426 | INFO     | 
[2025-10-12 05:14:58] 2025-10-12 03:14:27,426 | INFO     | architecture information:
[2025-10-12 05:14:58] 2025-10-12 03:14:27,426 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:14:58] 2025-10-12 03:14:27,435 | INFO     | cat /etc/os-release:
[2025-10-12 05:14:58] NAME="CentOS Linux"
[2025-10-12 05:14:58] VERSION="7 (Core)"
[2025-10-12 05:14:58] ID="centos"
[2025-10-12 05:14:58] ID_LIKE="rhel fedora"
[2025-10-12 05:14:58] VERSION_ID="7"
[2025-10-12 05:14:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:14:58] ANSI_COLOR="0;31"
[2025-10-12 05:14:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:14:58] HOME_URL="https://www.centos.org/"
[2025-10-12 05:14:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:14:58] 
[2025-10-12 05:14:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:14:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:14:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:14:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:14:58] 
[2025-10-12 05:14:58] 2025-10-12 03:14:27,435 | INFO     | ***************************************
[2025-10-12 05:14:58] 2025-10-12 03:14:27,938 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 05:14:58] 2025-10-12 03:14:27,951 | INFO     | sufficient remaining disk space (329726820352 B)
[2025-10-12 05:14:58] 2025-10-12 03:14:27,951 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:14:58] 2025-10-12 03:14:27,951 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:14:58] 2025-10-12 03:14:27,951 | INFO     | update_server=False
[2025-10-12 05:14:58] 2025-10-12 03:14:27,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:14:58] 2025-10-12 03:14:27,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:14:58] 2025-10-12 03:14:27,951 | INFO     | aborting loop
[2025-10-12 05:14:58] 2025-10-12 03:14:27,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:14:58] 2025-10-12 03:14:28,396 | INFO     | all job control threads have been joined
[2025-10-12 05:14:58] 2025-10-12 03:14:28,798 | INFO     | all data control threads have been joined
[2025-10-12 05:14:58] 2025-10-12 03:14:28,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:14:58] 2025-10-12 03:14:28,864 | INFO     | all payload control threads have been joined
[2025-10-12 05:14:58] 2025-10-12 03:14:28,957 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:28,957 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:28,957 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,003 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,013 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,327 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,401 | INFO     | [job] control thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,429 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:14:58] 2025-10-12 03:14:29,804 | INFO     | [data] control thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,846 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,870 | INFO     | [payload] control thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:29,997 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:30,406 | INFO     | [job] validate thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:30,816 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:33,632 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:34,076 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:14:58] 2025-10-12 03:14:38,512 | INFO     | job.realtimelogging is not enabled
[2025-10-12 05:14:58] 2025-10-12 03:14:39,518 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:14:58] 2025-10-12 03:14:41,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140703696242496)>', '<ExcThread(monitor, started 140703424288512)>']
[2025-10-12 05:14:58] 2025-10-12 03:14:46,441 | INFO     | all workflow threads have been joined
[2025-10-12 05:14:58] 2025-10-12 03:14:46,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:14:58] 2025-10-12 03:14:46,441 | INFO     | traces error code: 0
[2025-10-12 05:14:58] 2025-10-12 03:14:46,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:14:58] 2025-10-12 03:14:58,506 | INFO     | PID=3409717 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 05:14:58] 2025-10-12 03:14:58,506 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:14:58] 2025-10-12 03:14:58,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:14:58] 2025-10-12 03:14:58,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:14:58] 2025-10-12 03:14:58,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:14:58] 2025-10-12 03:14:58,506 | INFO     | [monitor] control thread has ended
[2025-10-12 05:14:58] 2025-10-12 03:14:58,554 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:14:58] 2025-10-12 03:14:58,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:14:58] 2025-10-12 03:14:58,558 [wrapper] pilotpid: 3409717
[2025-10-12 05:14:58] 2025-10-12 03:14:58,560 [wrapper] Pilot exit status: 0
[2025-10-12 05:14:58] 2025-10-12 03:14:58,568 [wrapper] pandaids: 6832254106
[2025-10-12 05:14:58] 2025-10-12 03:14:58,584 [wrapper] cleanup supervisor_pilot 3425715 3409718
[2025-10-12 05:14:58] 2025-10-12 03:14:58,586 [wrapper] Test setup, not cleaning
[2025-10-12 05:14:58] 2025-10-12 03:14:58,589 [wrapper] apfmon messages muted
[2025-10-12 05:14:58] 2025-10-12 03:14:58,591 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:14:58] 2025-10-12 03:14:58,593 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:14:58]  *** Error codes and diagnostics ***
[2025-10-12 05:14:58]     "exeErrorCode": 0,
[2025-10-12 05:14:58]     "exeErrorDiag": "",
[2025-10-12 05:14:58]     "pilotErrorCode": 0,
[2025-10-12 05:14:58]     "pilotErrorDiag": "",
[2025-10-12 05:14:58]  *** Listing of results directory ***
[2025-10-12 05:14:58] total 390684
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc    552446 Oct  6 03:37 pilot3.tar.gz
[2025-10-12 05:14:58] -rwx------ 1 boinc boinc     36292 Oct  6 03:39 runpilot2-wrapper.sh
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc      5112 Oct  6 03:39 queuedata.json
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc       100 Oct 12 04:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:14:58] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 04:01 run_atlas
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc       105 Oct 12 04:01 job.xml
[2025-10-12 05:14:58] -rw-r--r-- 2 boinc boinc 215580239 Oct 12 04:01 EVNT.46376901._003781.pool.root.1
[2025-10-12 05:14:58] -rw-r--r-- 2 boinc boinc    565600 Oct 12 04:01 input.tar.gz
[2025-10-12 05:14:58] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:01 start_atlas.sh
[2025-10-12 05:14:58] drwxrwx--x 2 boinc boinc      4096 Oct 12 04:01 shared
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:01 boinc_setup_complete
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc      6442 Oct 12 04:01 init_data.xml
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:01 boinc_lockfile
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc      2519 Oct 12 04:01 pandaJob.out
[2025-10-12 05:14:58] -rw------- 1 boinc boinc    975496 Oct 12 04:01 agis_schedconf.cvmfs.json
[2025-10-12 05:14:58] -rw------- 1 boinc boinc   1560580 Oct 12 04:01 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:14:58] drwx------ 4 boinc boinc      4096 Oct 12 04:01 pilot3
[2025-10-12 05:14:58] -rw------- 1 boinc boinc 178818946 Oct 12 05:13 HITS.46376905._102258.pool.root.1
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc       529 Oct 12 05:14 boinc_task_state.xml
[2025-10-12 05:14:58] -rw------- 1 boinc boinc      1021 Oct 12 05:14 memory_monitor_summary.json
[2025-10-12 05:14:58] -rw------- 1 boinc boinc    245970 Oct 12 05:14 log.46376905._102258.job.log.tgz.1
[2025-10-12 05:14:58] -rw------- 1 boinc boinc      7766 Oct 12 05:14 heartbeat.json
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc      8192 Oct 12 05:14 boinc_mmap_file
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc        27 Oct 12 05:14 wrapper_checkpoint.txt
[2025-10-12 05:14:58] -rw------- 1 boinc boinc       747 Oct 12 05:14 pilotlog.txt
[2025-10-12 05:14:58] -rw------- 1 boinc boinc        95 Oct 12 05:14 pilot_heartbeat.json
[2025-10-12 05:14:58] -rw------- 1 boinc boinc    646691 Oct 12 05:14 log.46376905._102258.job.log.1
[2025-10-12 05:14:58] -rw------- 1 boinc boinc       357 Oct 12 05:14 output.list
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc       620 Oct 12 05:14 runtime_log
[2025-10-12 05:14:58] -rw------- 1 boinc boinc    911360 Oct 12 05:14 result.tar.gz
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc      8792 Oct 12 05:14 runtime_log.err
[2025-10-12 05:14:58] -rw------- 1 boinc boinc       661 Oct 12 05:14 liILDmINpP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0AIMDmsLi2Dn.diag
[2025-10-12 05:14:58] -rw-r--r-- 1 boinc boinc     11738 Oct 12 05:14 stderr.txt
[2025-10-12 05:14:58] HITS file was successfully produced:
[2025-10-12 05:14:58] -rw------- 1 boinc boinc 178818946 Oct 12 05:13 shared/HITS.pool.root.1
[2025-10-12 05:14:58]  *** Contents of shared directory: ***
[2025-10-12 05:14:58] total 386628
[2025-10-12 05:14:58] -rw-r--r-- 2 boinc boinc 215580239 Oct 12 04:01 ATLAS.root_0
[2025-10-12 05:14:58] -rw-r--r-- 2 boinc boinc    565600 Oct 12 04:01 input.tar.gz
[2025-10-12 05:14:58] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:01 start_atlas.sh
[2025-10-12 05:14:58] -rw------- 1 boinc boinc 178818946 Oct 12 05:13 HITS.pool.root.1
[2025-10-12 05:14:58] -rw------- 1 boinc boinc    911360 Oct 12 05:14 result.tar.gz
05:15:00 (3406002): run_atlas exited; CPU time 12498.385798
05:15:00 (3406002): called boinc_finish(0)

</stderr_txt>
]]>

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