Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:25:26 (4004170): wrapper (7.7.26015): starting
13:25:26 (4004170): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 13:25:26] Arguments: --nthreads 9
[2025-10-11 13:25:26] Threads: 9
[2025-10-11 13:25:26] Checking for CVMFS
[2025-10-11 13:25:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 13:25:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 13:25:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 13:25:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 13:25:27] 2.13.2.0 5035 111675 396100 151591 1 65 21119391 40960000 13120 16776704 1 188614996 99.670 165720686 37391 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 13:25:27] CVMFS is ok
[2025-10-11 13:25:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 13:25:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 13:25:27] Further information can be found at the LHC@home message board.
[2025-10-11 13:25:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 13:25:27] Checking for apptainer binary...
[2025-10-11 13:25:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 13:25:27] Running /usr/bin/apptainer --version
[2025-10-11 13:25:27] apptainer version 1.4.3-1.el9
[2025-10-11 13:25:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 13:25:28] c-206-41.aglt2.org
[2025-10-11 13:25:28] apptainer works
[2025-10-11 13:25:28] Set ATHENA_PROC_NUMBER=9
[2025-10-11 13:25:28] Set ATHENA_CORE_NUMBER=9
[2025-10-11 13:25:28] Starting ATLAS job with PandaID=6838363651
[2025-10-11 13:25:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 15:09:13]  *** The last 200 lines of the pilot log: ***
[2025-10-11 15:09:13]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6838363651/log.46676269._056147.job.log.tgz.1
[2025-10-11 15:09:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/19/log.46676269._056147.job.log.tgz.1
[2025-10-11 15:09:13]  workdir=None
[2025-10-11 15:09:13] ]
[2025-10-11 15:09:13] 2025-10-11 19:08:30,138 | INFO     | transferring file log.46676269._056147.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6838363651/log.46676269._056147.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 15:09:13] 2025-10-11 19:08:30,138 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6838363651/log.46676269._056147.job.log.tgz.1 /tmp/boinchome/slots/2/log.46676269._056147.job
[2025-10-11 15:09:13] 2025-10-11 19:08:30,161 | INFO     | adding to output.list: log.46676269._056147.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/19/log.46676269._056147.job.log.tg
[2025-10-11 15:09:13] 2025-10-11 19:08:30,161 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 15:09:13] 2025-10-11 19:08:30,161 | INFO     | summary of transferred files:
[2025-10-11 15:09:13] 2025-10-11 19:08:30,162 | INFO     |  -- lfn=log.46676269._056147.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 15:09:13] 2025-10-11 19:08:30,162 | INFO     | stage-out finished correctly
[2025-10-11 15:09:13] 2025-10-11 19:08:31,771 | INFO     | time since job start (6104s) is within the limit (172800.0s)
[2025-10-11 15:09:13] 2025-10-11 19:08:32,641 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 15:09:13] 2025-10-11 19:08:32,727 | INFO     | job 6838363651 has state=finished
[2025-10-11 15:09:13] 2025-10-11 19:08:32,727 | INFO     | preparing for final server update for job 6838363651 in state='finished'
[2025-10-11 15:09:13] 2025-10-11 19:08:32,728 | INFO     | this job has now completed (state=finished)
[2025-10-11 15:09:13] 2025-10-11 19:08:32,728 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 15:09:13] 2025-10-11 19:08:32,728 | INFO     | log transfer has been attempted: DONE
[2025-10-11 15:09:13] 2025-10-11 19:08:32,728 | INFO     | job 6838363651 has finished - writing final server update
[2025-10-11 15:09:13] 2025-10-11 19:08:32,728 | INFO     | total number of processed events: 400 (read)
[2025-10-11 15:09:13] 2025-10-11 19:08:32,729 | INFO     | executing command: lscpu
[2025-10-11 15:09:13] 2025-10-11 19:08:32,802 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 15:09:13] 2025-10-11 19:08:33,779 | INFO     | time since job start (6106s) is within the limit (172800.0s)
[2025-10-11 15:09:13] 2025-10-11 19:08:34,935 | WARNING  | process 4017271 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 15:09:13] 2025-10-11 19:08:34,935 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838363651/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 15:09:13] 2025-10-11 19:08:35,163 | INFO     | number of running child processes to parent process 4017271: 1
[2025-10-11 15:09:13] 2025-10-11 19:08:35,163 | INFO     | maximum number of monitored processes: 6
[2025-10-11 15:09:13] 2025-10-11 19:08:35,785 | INFO     | time since job start (6108s) is within the limit (172800.0s)
[2025-10-11 15:09:13] 2025-10-11 19:08:37,068 | INFO     | PID=4009554 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 15:09:13] 2025-10-11 19:08:37,069 | INFO     | .. there are 11 such processes running
[2025-10-11 15:09:13] 2025-10-11 19:08:37,667 | INFO     | monitor loop #440: job 0:6838363651 is in state 'finished'
[2025-10-11 15:09:13] 2025-10-11 19:08:37,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:09:13] 2025-10-11 19:08:38,069 | INFO     | time since job start (6111s) is within the limit (172800.0s)
[2025-10-11 15:09:13] 2025-10-11 19:08:40,086 | INFO     | time since job start (6113s) is within the limit (172800.0s)
[2025-10-11 15:09:13] 2025-10-11 19:08:40,175 | INFO     | monitor loop #441: job 0:6838363651 is in state 'finished'
[2025-10-11 15:09:13] 2025-10-11 19:08:40,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:09:13] 2025-10-11 19:08:41,551 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 15:09:13] 2025-10-11 19:08:41,555 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3227.327250000001
[2025-10-11 15:09:13] 2025-10-11 19:08:41,565 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838363651/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 15:09:13] 2025-10-11 19:08:41,566 | INFO     | extracted standard info from prmon json
[2025-10-11 15:09:13] 2025-10-11 19:08:41,566 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 15:09:13] 2025-10-11 19:08:41,566 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 15:09:13] 2025-10-11 19:08:41,566 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 15:09:13] 2025-10-11 19:08:41,566 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 15:09:13] 2025-10-11 19:08:41,568 | INFO     | fitting pss+swap vs Time
[2025-10-11 15:09:13] 2025-10-11 19:08:41,568 | INFO     | sum of square deviations: 233602081.1868133
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | sum of deviations: -13026331127.109894
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | mean x: 1760206789.2527473
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | mean y: 2669107.4395604394
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | -- intersect: 98156916588.89375
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | intersect: 98156916588.89375
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | chi2: 0.21197348637935073
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | -- intersect: 98156916588.89375
[2025-10-11 15:09:13] 2025-10-11 19:08:41,569 | INFO     | current memory leak: -55.76 B/s (using 91 data points, chi2=0.21)
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | could have reported an average CPU frequency of 3195 MHz (7 samples)
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | ..............................
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . Timing measurements:
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . get job = 0 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . initial setup = 3 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . payload setup = 45 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . stage-in = 0 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . payload execution = 5988 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . stage-out = 0 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | . log creation = 0 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,570 | INFO     | ..............................
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | 
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | job summary report
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | --------------------------------------------------
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | PanDA job id: 6838363651
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | task id: 46676269
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | errors: (none)
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | pilot state: finished 
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | transexitcode: 0
[2025-10-11 15:09:13] 2025-10-11 19:08:41,816 | INFO     | exeerrorcode: 0
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | exeerrordiag: 
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | exitcode: 0
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | exitmsg: OK
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | cpuconsumptiontime: 33777 s
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | nevents: 400
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | neventsw: 0
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | pid: 4017271
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | pgrp: 4017271
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | corecount: 9
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | event service: False
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 3: 2348941, 14: 2348941, 24: 2348969, 33: 2349387, 35: 2349443, 6038: 2376230, 6039: 2385228, 6042: 2385284, 6051: 2385
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | --------------------------------------------------
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | 
[2025-10-11 15:09:13] 2025-10-11 19:08:41,817 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 15:09:13] 2025-10-11 19:08:41,923 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,923 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,924 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,925 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,925 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,925 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 15:09:13] 2025-10-11 19:08:41,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 15:09:13] 2025-10-11 19:08:41,925 | INFO     | job 6838363651 has completed (purged errors)
[2025-10-11 15:09:13] 2025-10-11 19:08:41,925 | INFO     | overall cleanup function is called
[2025-10-11 15:09:13] 2025-10-11 19:08:42,933 | INFO     | --- collectZombieJob: --- 10, [4017271]
[2025-10-11 15:09:13] 2025-10-11 19:08:42,934 | INFO     | zombie collector waiting for pid 4017271
[2025-10-11 15:09:13] 2025-10-11 19:08:42,936 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 15:09:13] 2025-10-11 19:08:42,937 | INFO     | collected zombie processes
[2025-10-11 15:09:13] 2025-10-11 19:08:42,937 | INFO     | will attempt to kill all subprocesses of pid=4017271
[2025-10-11 15:09:13] 2025-10-11 19:08:43,181 | INFO     | process IDs to be killed: [4017271] (in reverse order)
[2025-10-11 15:09:13] 2025-10-11 19:08:43,301 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 15:09:13] 2025-10-11 19:08:43,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 15:09:13] 2025-10-11 19:08:43,329 | INFO     | did not find any defunct processes belonging to 4017271
[2025-10-11 15:09:13] 2025-10-11 19:08:43,339 | INFO     | did not find any defunct processes belonging to 4017271
[2025-10-11 15:09:13] 2025-10-11 19:08:43,340 | INFO     | ready for new job
[2025-10-11 15:09:13] 2025-10-11 19:08:43,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 15:09:13] 2025-10-11 19:08:43,341 | INFO     | ***************************************
[2025-10-11 15:09:13] 2025-10-11 19:08:43,341 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 15:09:13] 2025-10-11 19:08:43,341 | INFO     | ***************************************
[2025-10-11 15:09:13] 2025-10-11 19:08:43,341 | INFO     | 
[2025-10-11 15:09:13] 2025-10-11 19:08:43,345 | INFO     | architecture information:
[2025-10-11 15:09:13] 2025-10-11 19:08:43,345 | INFO     | executing command: cat /etc/os-release
[2025-10-11 15:09:13] 2025-10-11 19:08:43,390 | INFO     | cat /etc/os-release:
[2025-10-11 15:09:13] NAME="CentOS Linux"
[2025-10-11 15:09:13] VERSION="7 (Core)"
[2025-10-11 15:09:13] ID="centos"
[2025-10-11 15:09:13] ID_LIKE="rhel fedora"
[2025-10-11 15:09:13] VERSION_ID="7"
[2025-10-11 15:09:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 15:09:13] ANSI_COLOR="0;31"
[2025-10-11 15:09:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 15:09:13] HOME_URL="https://www.centos.org/"
[2025-10-11 15:09:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 15:09:13] 
[2025-10-11 15:09:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 15:09:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 15:09:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 15:09:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 15:09:13] 
[2025-10-11 15:09:13] 2025-10-11 19:08:43,390 | INFO     | ***************************************
[2025-10-11 15:09:13] 2025-10-11 19:08:43,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 15:09:13] 2025-10-11 19:08:43,917 | INFO     | sufficient remaining disk space (85339406336 B)
[2025-10-11 15:09:13] 2025-10-11 19:08:43,917 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 15:09:13] 2025-10-11 19:08:43,917 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 15:09:13] 2025-10-11 19:08:43,917 | INFO     | update_server=False
[2025-10-11 15:09:13] 2025-10-11 19:08:43,917 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 15:09:13] 2025-10-11 19:08:43,918 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 15:09:13] 2025-10-11 19:08:43,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 15:09:13] 2025-10-11 19:08:43,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:09:13] 2025-10-11 19:08:43,918 | INFO     | aborting loop
[2025-10-11 15:09:13] 2025-10-11 19:08:43,970 | INFO     | all data control threads have been joined
[2025-10-11 15:09:13] 2025-10-11 19:08:44,047 | INFO     | all job control threads have been joined
[2025-10-11 15:09:13] 2025-10-11 19:08:44,779 | INFO     | all payload control threads have been joined
[2025-10-11 15:09:13] 2025-10-11 19:08:44,923 | INFO     | [job] retrieve thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:44,934 | INFO     | [job] job monitor thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:44,976 | INFO     | [data] control thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,054 | INFO     | [job] control thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,106 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,388 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,392 | INFO     | [payload] failed_post thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,607 | INFO     | [data] copytool_in thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,735 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,784 | INFO     | [payload] control thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,785 | INFO     | [job] validate thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:45,925 | INFO     | [data] copytool_out thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:46,195 | INFO     | [payload] validate_post thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:46,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:09:13] 2025-10-11 19:08:47,669 | INFO     | [job] queue monitor thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:47,925 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 15:09:13] 2025-10-11 19:08:56,737 | INFO     | [monitor] cgroup control has ended
[2025-10-11 15:09:13] 2025-10-11 19:08:58,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843390465856)>', '<ExcThread(monitor, started 139842902017792)>']
[2025-10-11 15:09:13] 2025-10-11 19:09:03,683 | INFO     | all workflow threads have been joined
[2025-10-11 15:09:13] 2025-10-11 19:09:03,683 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 15:09:13] 2025-10-11 19:09:03,683 | INFO     | traces error code: 0
[2025-10-11 15:09:13] 2025-10-11 19:09:03,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 15:09:13] 2025-10-11 19:09:13,493 | INFO     | PID=4009554 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 15:09:13] 2025-10-11 19:09:13,493 | INFO     | .. there are 11 such processes running
[2025-10-11 15:09:13] 2025-10-11 19:09:13,493 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 15:09:13] 2025-10-11 19:09:13,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 15:09:13] 2025-10-11 19:09:13,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 15:09:13] 2025-10-11 19:09:13,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 15:09:13] 2025-10-11 19:09:13,494 | INFO     | [monitor] control thread has ended
[2025-10-11 15:09:13] 2025-10-11 19:09:13,616 [wrapper] ==== pilot stdout END ====
[2025-10-11 15:09:13] 2025-10-11 19:09:13,618 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 15:09:13] 2025-10-11 19:09:13,636 [wrapper] pilotpid: 4009554
[2025-10-11 15:09:13] 2025-10-11 19:09:13,640 [wrapper] Pilot exit status: 0
[2025-10-11 15:09:13] 2025-10-11 19:09:13,653 [wrapper] pandaids: 6838363651
[2025-10-11 15:09:13] 2025-10-11 19:09:13,720 [wrapper] cleanup supervisor_pilot 4146979 4009555
[2025-10-11 15:09:13] 2025-10-11 19:09:13,724 [wrapper] Test setup, not cleaning
[2025-10-11 15:09:13] 2025-10-11 19:09:13,727 [wrapper] apfmon messages muted
[2025-10-11 15:09:13] 2025-10-11 19:09:13,730 [wrapper] ==== wrapper stdout END ====
[2025-10-11 15:09:13] 2025-10-11 19:09:13,733 [wrapper] ==== wrapper stderr END ====
[2025-10-11 15:09:13]  *** Error codes and diagnostics ***
[2025-10-11 15:09:13]     "exeErrorCode": 0,
[2025-10-11 15:09:13]     "exeErrorDiag": "",
[2025-10-11 15:09:13]     "pilotErrorCode": 0,
[2025-10-11 15:09:13]     "pilotErrorDiag": "",
[2025-10-11 15:09:13]  *** Listing of results directory ***
[2025-10-11 15:09:13] total 412304
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 06:16 pilot3.tar.gz
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 06:27 queuedata.json
[2025-10-11 15:09:13] -rwx------. 1 boincer umatlas     36292 Oct 11 06:28 runpilot2-wrapper.sh
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas       100 Oct 11 13:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 15:09:13] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 13:25 run_atlas
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas       105 Oct 11 13:25 job.xml
[2025-10-11 15:09:13] -rw-r--r--. 2 boincer umatlas 220085750 Oct 11 13:25 EVNT.46676267._002258.pool.root.1
[2025-10-11 15:09:13] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 13:25 shared
[2025-10-11 15:09:13] -rw-r--r--. 2 boincer umatlas    569682 Oct 11 13:25 input.tar.gz
[2025-10-11 15:09:13] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:25 start_atlas.sh
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas         0 Oct 11 13:25 boinc_lockfile
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 13:25 pandaJob.out
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas    975520 Oct 11 13:26 agis_schedconf.cvmfs.json
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas   1560580 Oct 11 13:26 agis_ddmendpoints.agis.ALL.json
[2025-10-11 15:09:13] drwx------. 5 boincer umatlas      4096 Oct 11 13:26 pilot3
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas      6898 Oct 11 15:03 init_data.xml
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas 195770118 Oct 11 15:07 HITS.46676269._056147.pool.root.1
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas       529 Oct 11 15:08 boinc_task_state.xml
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas        95 Oct 11 15:08 pilot_heartbeat.json
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas      1029 Oct 11 15:08 memory_monitor_summary.json
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas    364844 Oct 11 15:08 log.46676269._056147.job.log.tgz.1
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas      7779 Oct 11 15:08 heartbeat.json
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 15:09 boinc_mmap_file
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas        27 Oct 11 15:09 wrapper_checkpoint.txt
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas       823 Oct 11 15:09 pilotlog.txt
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas    858300 Oct 11 15:09 log.46676269._056147.job.log.1
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas       357 Oct 11 15:09 output.list
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas       620 Oct 11 15:09 runtime_log
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas   1239040 Oct 11 15:09 result.tar.gz
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas      8703 Oct 11 15:09 runtime_log.err
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas       652 Oct 11 15:09 j7eNDm40lR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNDgNDmKQU1fn.diag
[2025-10-11 15:09:13] -rw-r--r--. 1 boincer umatlas     22442 Oct 11 15:09 stderr.txt
[2025-10-11 15:09:13] HITS file was successfully produced:
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas 195770118 Oct 11 15:07 shared/HITS.pool.root.1
[2025-10-11 15:09:13]  *** Contents of shared directory: ***
[2025-10-11 15:09:13] total 407904
[2025-10-11 15:09:13] -rw-r--r--. 2 boincer umatlas 220085750 Oct 11 13:25 ATLAS.root_0
[2025-10-11 15:09:13] -rw-r--r--. 2 boincer umatlas    569682 Oct 11 13:25 input.tar.gz
[2025-10-11 15:09:13] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 13:25 start_atlas.sh
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas 195770118 Oct 11 15:07 HITS.pool.root.1
[2025-10-11 15:09:13] -rw-------. 1 boincer umatlas   1239040 Oct 11 15:09 result.tar.gz
15:09:15 (4004170): run_atlas exited; CPU time 33786.461147
15:09:15 (4004170): called boinc_finish(0)

</stderr_txt>
]]>

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