Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:19:32 (273758): wrapper (7.7.26015): starting
20:19:32 (273758): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 20:19:32] Arguments: --nthreads 6
[2025-10-14 20:19:32] Threads: 6
[2025-10-14 20:19:32] Checking for CVMFS
[2025-10-14 20:19:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 20:19:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 20:19:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 20:19:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 20:19:34] 2.13.1.0 3910062 900 64960 151696 0 57 30840311 52428800 922 130560 0 1699375 99.995 37107 122 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-14 20:19:34] CVMFS is ok
[2025-10-14 20:19:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 20:19:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-14 20:19:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-14 20:19:34] Further information can be found at the LHC@home message board.
[2025-10-14 20:19:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 20:19:34] Checking for apptainer binary...
[2025-10-14 20:19:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 20:19:34] Running /usr/bin/apptainer --version
[2025-10-14 20:19:34] apptainer version 1.4.1-1.el9
[2025-10-14 20:19:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 20:19:34] Atto003
[2025-10-14 20:19:34] apptainer works
[2025-10-14 20:19:34] Set ATHENA_PROC_NUMBER=6
[2025-10-14 20:19:34] Set ATHENA_CORE_NUMBER=6
[2025-10-14 20:19:34] Starting ATLAS job with PandaID=6837398329
[2025-10-14 20:19:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 21:41:15]  *** The last 200 lines of the pilot log: ***
[2025-10-14 21:41:15] 2025-10-14 12:40:30,937 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6837398329/log.46676269._031032.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._031032.job
[2025-10-14 21:41:15] 2025-10-14 12:40:30,944 | INFO     | adding to output.list: log.46676269._031032.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c4/a9/log.46676269._031032.job.log.tg
[2025-10-14 21:41:15] 2025-10-14 12:40:30,945 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-14 21:41:15] 2025-10-14 12:40:30,945 | INFO     | summary of transferred files:
[2025-10-14 21:41:15] 2025-10-14 12:40:30,945 | INFO     |  -- lfn=log.46676269._031032.job.log.tgz.1, status_code=0, status=transferred
[2025-10-14 21:41:15] 2025-10-14 12:40:30,945 | INFO     | stage-out finished correctly
[2025-10-14 21:41:15] 2025-10-14 12:40:31,947 | INFO     | monitor loop #370: job 0:6837398329 is in state 'finished'
[2025-10-14 21:41:15] 2025-10-14 12:40:31,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 21:41:15] 2025-10-14 12:40:32,100 | INFO     | time since job start (4850s) is within the limit (172800.0s)
[2025-10-14 21:41:15] 2025-10-14 12:40:33,162 | INFO     | PID=277550 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 21:41:15] 2025-10-14 12:40:33,163 | INFO     | .. there are 2 such processes running
[2025-10-14 21:41:15] 2025-10-14 12:40:33,594 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 21:41:15] 2025-10-14 12:40:34,163 | INFO     | time since job start (4852s) is within the limit (172800.0s)
[2025-10-14 21:41:15] 2025-10-14 12:40:34,450 | INFO     | monitor loop #371: job 0:6837398329 is in state 'finished'
[2025-10-14 21:41:15] 2025-10-14 12:40:34,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 21:41:15] 2025-10-14 12:40:34,821 | INFO     | job 6837398329 has state=finished
[2025-10-14 21:41:15] 2025-10-14 12:40:34,821 | INFO     | preparing for final server update for job 6837398329 in state='finished'
[2025-10-14 21:41:15] 2025-10-14 12:40:34,822 | INFO     | this job has now completed (state=finished)
[2025-10-14 21:41:15] 2025-10-14 12:40:34,822 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 21:41:15] 2025-10-14 12:40:34,822 | INFO     | log transfer has been attempted: DONE
[2025-10-14 21:41:15] 2025-10-14 12:40:34,822 | INFO     | job 6837398329 has finished - writing final server update
[2025-10-14 21:41:15] 2025-10-14 12:40:34,822 | INFO     | total number of processed events: 400 (read)
[2025-10-14 21:41:15] 2025-10-14 12:40:34,823 | INFO     | executing command: lscpu
[2025-10-14 21:41:15] 2025-10-14 12:40:34,832 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 21:41:15] 2025-10-14 12:40:36,168 | INFO     | time since job start (4854s) is within the limit (172800.0s)
[2025-10-14 21:41:15] 2025-10-14 12:40:36,953 | INFO     | monitor loop #372: job 0:6837398329 is in state 'finished'
[2025-10-14 21:41:15] 2025-10-14 12:40:36,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 21:41:15] 2025-10-14 12:40:38,173 | INFO     | time since job start (4856s) is within the limit (172800.0s)
[2025-10-14 21:41:15] 2025-10-14 12:40:39,456 | INFO     | monitor loop #373: job 0:6837398329 is in state 'finished'
[2025-10-14 21:41:15] 2025-10-14 12:40:39,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 21:41:15] 2025-10-14 12:40:40,178 | INFO     | time since job start (4858s) is within the limit (172800.0s)
[2025-10-14 21:41:15] 2025-10-14 12:40:41,959 | INFO     | monitor loop #374: job 0:6837398329 is in state 'finished'
[2025-10-14 21:41:15] 2025-10-14 12:40:41,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,184 | INFO     | time since job start (4860s) is within the limit (172800.0s)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,628 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 21:41:15] 2025-10-14 12:40:42,630 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3899.8878125
[2025-10-14 21:41:15] 2025-10-14 12:40:42,631 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6837398329/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,631 | INFO     | extracted standard info from prmon json
[2025-10-14 21:41:15] 2025-10-14 12:40:42,631 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 21:41:15] 2025-10-14 12:40:42,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 21:41:15] 2025-10-14 12:40:42,632 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 21:41:15] 2025-10-14 12:40:42,632 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 21:41:15] 2025-10-14 12:40:42,632 | INFO     | fitting pss+swap vs Time
[2025-10-14 21:41:15] 2025-10-14 12:40:42,632 | INFO     | sum of square deviations: 120605052.0
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | sum of deviations: -8679992926.0
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | mean x: 1760443301.0
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | mean y: 2638435.520547945
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | -- intersect: 126702433725.22441
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | intersect: 126702433725.22441
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | chi2: 0.04863992898765388
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | -- intersect: 126702433725.22441
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | current memory leak: -71.97 B/s (using 73 data points, chi2=0.05)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | could have reported an average CPU frequency of 3788 MHz (6 samples)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | ..............................
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | . Timing measurements:
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | . get job = 0 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | . initial setup = 5 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | . payload setup = 2 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,633 | INFO     | . stage-in = 0 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,634 | INFO     | . payload execution = 4829 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,634 | INFO     | . stage-out = 0 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,634 | INFO     | . log creation = 0 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,634 | INFO     | ..............................
[2025-10-14 21:41:15] 2025-10-14 12:40:42,667 | INFO     | 
[2025-10-14 21:41:15] 2025-10-14 12:40:42,667 | INFO     | job summary report
[2025-10-14 21:41:15] 2025-10-14 12:40:42,667 | INFO     | --------------------------------------------------
[2025-10-14 21:41:15] 2025-10-14 12:40:42,667 | INFO     | PanDA job id: 6837398329
[2025-10-14 21:41:15] 2025-10-14 12:40:42,667 | INFO     | task id: 46676269
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | errors: (none)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | pilot state: finished 
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | transexitcode: 0
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | exeerrorcode: 0
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | exeerrordiag: 
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | exitcode: 0
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | exitmsg: OK
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | cpuconsumptiontime: 26457 s
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | nevents: 400
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | neventsw: 0
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | pid: 284303
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | pgrp: 284303
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | corecount: 6
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | event service: False
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | sizes: {0: 2348806, 2: 2349068, 11: 2349096, 4834: 2375461, 4836: 2384459, 4838: 2384515, 4847: 2384837}
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | --------------------------------------------------
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | 
[2025-10-14 21:41:15] 2025-10-14 12:40:42,668 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,676 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | job 6837398329 has completed (purged errors)
[2025-10-14 21:41:15] 2025-10-14 12:40:42,677 | INFO     | overall cleanup function is called
[2025-10-14 21:41:15] 2025-10-14 12:40:43,683 | INFO     | --- collectZombieJob: --- 10, [284303]
[2025-10-14 21:41:15] 2025-10-14 12:40:43,683 | INFO     | zombie collector waiting for pid 284303
[2025-10-14 21:41:15] 2025-10-14 12:40:43,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 21:41:15] 2025-10-14 12:40:43,683 | INFO     | collected zombie processes
[2025-10-14 21:41:15] 2025-10-14 12:40:43,683 | INFO     | will attempt to kill all subprocesses of pid=284303
[2025-10-14 21:41:15] 2025-10-14 12:40:43,731 | INFO     | process IDs to be killed: [284303] (in reverse order)
[2025-10-14 21:41:15] 2025-10-14 12:40:43,748 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 21:41:15] 2025-10-14 12:40:43,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 21:41:15] 2025-10-14 12:40:43,750 | INFO     | did not find any defunct processes belonging to 284303
[2025-10-14 21:41:15] 2025-10-14 12:40:43,751 | INFO     | did not find any defunct processes belonging to 284303
[2025-10-14 21:41:15] 2025-10-14 12:40:43,751 | INFO     | ready for new job
[2025-10-14 21:41:15] 2025-10-14 12:40:43,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 21:41:15] 2025-10-14 12:40:43,752 | INFO     | ***************************************
[2025-10-14 21:41:15] 2025-10-14 12:40:43,752 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 21:41:15] 2025-10-14 12:40:43,752 | INFO     | ***************************************
[2025-10-14 21:41:15] 2025-10-14 12:40:43,752 | INFO     | 
[2025-10-14 21:41:15] 2025-10-14 12:40:43,752 | INFO     | architecture information:
[2025-10-14 21:41:15] 2025-10-14 12:40:43,753 | INFO     | executing command: cat /etc/os-release
[2025-10-14 21:41:15] 2025-10-14 12:40:43,758 | INFO     | cat /etc/os-release:
[2025-10-14 21:41:15] NAME="CentOS Linux"
[2025-10-14 21:41:15] VERSION="7 (Core)"
[2025-10-14 21:41:15] ID="centos"
[2025-10-14 21:41:15] ID_LIKE="rhel fedora"
[2025-10-14 21:41:15] VERSION_ID="7"
[2025-10-14 21:41:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 21:41:15] ANSI_COLOR="0;31"
[2025-10-14 21:41:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 21:41:15] HOME_URL="https://www.centos.org/"
[2025-10-14 21:41:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 21:41:15] 
[2025-10-14 21:41:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 21:41:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 21:41:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 21:41:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 21:41:15] 
[2025-10-14 21:41:15] 2025-10-14 12:40:43,758 | INFO     | ***************************************
[2025-10-14 21:41:15] 2025-10-14 12:40:44,261 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | INFO     | sufficient remaining disk space (112746037248 B)
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | INFO     | update_server=False
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 21:41:15] 2025-10-14 12:40:44,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 21:41:15] 2025-10-14 12:40:44,415 | INFO     | all data control threads have been joined
[2025-10-14 21:41:15] 2025-10-14 12:40:44,462 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 21:41:15] 2025-10-14 12:40:44,462 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 21:41:15] 2025-10-14 12:40:44,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 21:41:15] 2025-10-14 12:40:44,462 | INFO     | will abort loop
[2025-10-14 21:41:15] 2025-10-14 12:40:44,904 | INFO     | all job control threads have been joined
[2025-10-14 21:41:15] 2025-10-14 12:40:45,271 | INFO     | [job] retrieve thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:45,273 | INFO     | [job] queue monitor thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:45,287 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:45,420 | INFO     | [data] control thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:45,468 | INFO     | [job] job monitor thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:45,611 | INFO     | all payload control threads have been joined
[2025-10-14 21:41:15] 2025-10-14 12:40:45,773 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:45,774 | INFO     | [data] copytool_in thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:45,910 | INFO     | [job] control thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:46,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:46,273 | INFO     | [data] copytool_out thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:46,341 | INFO     | [payload] failed_post thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:46,510 | INFO     | [job] validate thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:46,616 | INFO     | [payload] control thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:46,649 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:46,833 | INFO     | [payload] validate_post thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:48,273 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 21:41:15] 2025-10-14 12:40:49,320 | INFO     | [monitor] cgroup control has ended
[2025-10-14 21:41:15] 2025-10-14 12:40:49,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933711271744)>', '<ExcThread(monitor, started 139933205370624)>']
[2025-10-14 21:41:15] 2025-10-14 12:40:54,363 | INFO     | all workflow threads have been joined
[2025-10-14 21:41:15] 2025-10-14 12:40:54,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 21:41:15] 2025-10-14 12:40:54,363 | INFO     | traces error code: 0
[2025-10-14 21:41:15] 2025-10-14 12:40:54,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 21:41:15] 2025-10-14 12:41:15,320 | INFO     | PID=277550 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 21:41:15] 2025-10-14 12:41:15,320 | INFO     | .. there are 2 such processes running
[2025-10-14 21:41:15] 2025-10-14 12:41:15,320 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 21:41:15] 2025-10-14 12:41:15,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 21:41:15] 2025-10-14 12:41:15,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 21:41:15] 2025-10-14 12:41:15,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 21:41:15] 2025-10-14 12:41:15,320 | INFO     | [monitor] control thread has ended
[2025-10-14 21:41:15] 2025-10-14 12:41:15,379 [wrapper] ==== pilot stdout END ====
[2025-10-14 21:41:15] 2025-10-14 12:41:15,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 21:41:15] 2025-10-14 12:41:15,381 [wrapper] pilotpid: 277550
[2025-10-14 21:41:15] 2025-10-14 12:41:15,383 [wrapper] Pilot exit status: 0
[2025-10-14 21:41:15] 2025-10-14 12:41:15,387 [wrapper] pandaids: 6837398329
[2025-10-14 21:41:15] 2025-10-14 12:41:15,398 [wrapper] cleanup supervisor_pilot  322541 277551
[2025-10-14 21:41:15] 2025-10-14 12:41:15,399 [wrapper] Test setup, not cleaning
[2025-10-14 21:41:15] 2025-10-14 12:41:15,400 [wrapper] apfmon messages muted
[2025-10-14 21:41:15] 2025-10-14 12:41:15,401 [wrapper] ==== wrapper stdout END ====
[2025-10-14 21:41:15] 2025-10-14 12:41:15,402 [wrapper] ==== wrapper stderr END ====
[2025-10-14 21:41:15]  *** Error codes and diagnostics ***
[2025-10-14 21:41:15]     "exeErrorCode": 0,
[2025-10-14 21:41:15]     "exeErrorDiag": "",
[2025-10-14 21:41:15]     "pilotErrorCode": 0,
[2025-10-14 21:41:15]     "pilotErrorDiag": "",
[2025-10-14 21:41:15]  *** Listing of results directory ***
[2025-10-14 21:41:15] total 415176
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc    557409 Oct 10 11:47 pilot3.tar.gz
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc      5112 Oct 10 11:56 queuedata.json
[2025-10-14 21:41:15] -rwx------. 1 boinc boinc     36292 Oct 10 11:57 runpilot2-wrapper.sh
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc       100 Oct 14 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 21:41:15] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 20:19 run_atlas
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc       105 Oct 14 20:19 job.xml
[2025-10-14 21:41:15] -rw-r--r--. 2 boinc boinc     15120 Oct 14 20:19 start_atlas.sh
[2025-10-14 21:41:15] drwxrwx--x. 2 boinc boinc        68 Oct 14 20:19 shared
[2025-10-14 21:41:15] -rw-r--r--. 2 boinc boinc    569686 Oct 14 20:19 input.tar.gz
[2025-10-14 21:41:15] -rw-r--r--. 2 boinc boinc 222337368 Oct 14 20:19 EVNT.46676267._001265.pool.root.1
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc         0 Oct 14 20:19 boinc_lockfile
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc      2549 Oct 14 20:19 pandaJob.out
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc    973972 Oct 14 20:19 agis_schedconf.cvmfs.json
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc   1560580 Oct 14 20:19 agis_ddmendpoints.agis.ALL.json
[2025-10-14 21:41:15] drwx------. 5 boinc boinc      4096 Oct 14 20:19 pilot3
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc      9350 Oct 14 20:34 init_data.xml
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc 196864206 Oct 14 21:40 HITS.46676269._031032.pool.root.1
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc       529 Oct 14 21:40 boinc_task_state.xml
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc      1015 Oct 14 21:40 memory_monitor_summary.json
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc    300943 Oct 14 21:40 log.46676269._031032.job.log.tgz.1
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc      7770 Oct 14 21:40 heartbeat.json
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc      8192 Oct 14 21:41 boinc_mmap_file
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc        27 Oct 14 21:41 wrapper_checkpoint.txt
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc       821 Oct 14 21:41 pilotlog.txt
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc        95 Oct 14 21:41 pilot_heartbeat.json
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc    725320 Oct 14 21:41 log.46676269._031032.job.log.1
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc       357 Oct 14 21:41 output.list
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc       620 Oct 14 21:41 runtime_log
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc   1044480 Oct 14 21:41 result.tar.gz
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc      8651 Oct 14 21:41 runtime_log.err
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc       638 Oct 14 21:41 QOPMDmRVIR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXDPMDmd9tI5n.diag
[2025-10-14 21:41:15] -rw-r--r--. 1 boinc boinc     22467 Oct 14 21:41 stderr.txt
[2025-10-14 21:41:15] HITS file was successfully produced:
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc 196864206 Oct 14 21:40 shared/HITS.pool.root.1
[2025-10-14 21:41:15]  *** Contents of shared directory: ***
[2025-10-14 21:41:15] total 410976
[2025-10-14 21:41:15] -rw-r--r--. 2 boinc boinc     15120 Oct 14 20:19 start_atlas.sh
[2025-10-14 21:41:15] -rw-r--r--. 2 boinc boinc    569686 Oct 14 20:19 input.tar.gz
[2025-10-14 21:41:15] -rw-r--r--. 2 boinc boinc 222337368 Oct 14 20:19 ATLAS.root_0
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc 196864206 Oct 14 21:40 HITS.pool.root.1
[2025-10-14 21:41:15] -rw-------. 1 boinc boinc   1044480 Oct 14 21:41 result.tar.gz
21:41:17 (273758): run_atlas exited; CPU time 26512.871199
21:41:17 (273758): called boinc_finish(0)

</stderr_txt>
]]>

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