Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:56:16 (1458254): wrapper (7.7.26015): starting
11:56:16 (1458254): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 11:56:16] Arguments: --nthreads 12
[2025-10-11 11:56:16] Threads: 12
[2025-10-11 11:56:16] Checking for CVMFS
[2025-10-11 11:56:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 11:56:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 11:56:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 11:56:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 11:56:16] 2.13.2.0 135553 2961 111340 151589 0 196 31292150 32503808 7928 16776704 0 48763750 99.971 3056150 51186 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 11:56:16] CVMFS is ok
[2025-10-11 11:56:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 11:56:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 11:56:16] Further information can be found at the LHC@home message board.
[2025-10-11 11:56:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 11:56:16] Checking for apptainer binary...
[2025-10-11 11:56:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 11:56:16] Running /usr/bin/apptainer --version
[2025-10-11 11:56:16] apptainer version 1.4.3-1.el9
[2025-10-11 11:56:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 11:56:16] c8-7-2.aglt2.org
[2025-10-11 11:56:16] apptainer works
[2025-10-11 11:56:16] Set ATHENA_PROC_NUMBER=12
[2025-10-11 11:56:16] Set ATHENA_CORE_NUMBER=12
[2025-10-11 11:56:16] Starting ATLAS job with PandaID=6838001053
[2025-10-11 11:56:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 12:25:33]  *** The last 200 lines of the pilot log: ***
[2025-10-11 12:25:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 12:25:33]  replicas=None
[2025-10-11 12:25:33]  scope=mc23_13p6TeV
[2025-10-11 12:25:33]  status=None
[2025-10-11 12:25:33]  status_code=0
[2025-10-11 12:25:33]  storage_token=
[2025-10-11 12:25:33]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6838001053/log.46676269._050165.job.log.tgz.1
[2025-10-11 12:25:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/b3/log.46676269._050165.job.log.tgz.1
[2025-10-11 12:25:33]  workdir=None
[2025-10-11 12:25:33] ]
[2025-10-11 12:25:33] 2025-10-11 16:24:34,656 | INFO     | transferring file log.46676269._050165.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6838001053/log.46676269._050165.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 12:25:33] 2025-10-11 16:24:34,657 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6838001053/log.46676269._050165.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._050165.job
[2025-10-11 12:25:33] 2025-10-11 16:24:34,672 | INFO     | adding to output.list: log.46676269._050165.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/b3/log.46676269._050165.job.log.tg
[2025-10-11 12:25:33] 2025-10-11 16:24:34,672 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 12:25:33] 2025-10-11 16:24:34,672 | INFO     | summary of transferred files:
[2025-10-11 12:25:33] 2025-10-11 16:24:34,672 | INFO     |  -- lfn=log.46676269._050165.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 12:25:33] 2025-10-11 16:24:34,672 | INFO     | stage-out finished correctly
[2025-10-11 12:25:33] 2025-10-11 16:24:36,159 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 12:25:33] 2025-10-11 16:24:36,373 | INFO     | time since job start (1691s) is within the limit (172800.0s)
[2025-10-11 12:25:33] 2025-10-11 16:24:36,651 | INFO     | monitor loop #129: job 0:6838001053 is in state 'finished'
[2025-10-11 12:25:33] 2025-10-11 16:24:36,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 12:25:33] 2025-10-11 16:24:37,836 | INFO     | PID=1461983 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:25:33] 2025-10-11 16:24:37,836 | INFO     | .. there are 11 such processes running
[2025-10-11 12:25:33] 2025-10-11 16:24:38,097 | INFO     | job 6838001053 has state=finished
[2025-10-11 12:25:33] 2025-10-11 16:24:38,097 | INFO     | preparing for final server update for job 6838001053 in state='finished'
[2025-10-11 12:25:33] 2025-10-11 16:24:38,098 | INFO     | this job has now completed (state=finished)
[2025-10-11 12:25:33] 2025-10-11 16:24:38,098 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 12:25:33] 2025-10-11 16:24:38,098 | INFO     | log transfer has been attempted: DONE
[2025-10-11 12:25:33] 2025-10-11 16:24:38,098 | INFO     | job 6838001053 has finished - writing final server update
[2025-10-11 12:25:33] 2025-10-11 16:24:38,098 | INFO     | total number of processed events: 400 (read)
[2025-10-11 12:25:33] 2025-10-11 16:24:38,099 | INFO     | executing command: lscpu
[2025-10-11 12:25:33] 2025-10-11 16:24:38,163 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 12:25:33] 2025-10-11 16:24:38,837 | INFO     | time since job start (1693s) is within the limit (172800.0s)
[2025-10-11 12:25:33] 2025-10-11 16:24:39,153 | INFO     | monitor loop #130: job 0:6838001053 is in state 'finished'
[2025-10-11 12:25:33] 2025-10-11 16:24:39,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 12:25:33] 2025-10-11 16:24:40,842 | INFO     | time since job start (1695s) is within the limit (172800.0s)
[2025-10-11 12:25:33] 2025-10-11 16:24:41,586 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 12:25:33] 2025-10-11 16:24:41,604 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3623.9735156249976
[2025-10-11 12:25:33] 2025-10-11 16:24:41,618 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6838001053/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 12:25:33] 2025-10-11 16:24:41,618 | INFO     | extracted standard info from prmon json
[2025-10-11 12:25:33] 2025-10-11 16:24:41,618 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 12:25:33] 2025-10-11 16:24:41,618 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 12:25:33] 2025-10-11 16:24:41,619 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:25:33] 2025-10-11 16:24:41,619 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:25:33] 2025-10-11 16:24:41,619 | INFO     | fitting pss+swap vs Time
[2025-10-11 12:25:33] 2025-10-11 16:24:41,619 | INFO     | sum of square deviations: 2865170.0
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | sum of deviations: -94757888.0
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | mean x: 1760199124.0
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | mean y: 2402522.380952381
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | -- intersect: 58216313546.74953
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | intersect: 58216313546.74953
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | chi2: 0.0011794613155655322
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | -- intersect: 58216313546.74953
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | current memory leak: -33.07 B/s (using 21 data points, chi2=0.00)
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | could have reported an average CPU frequency of 3603 MHz (4 samples)
[2025-10-11 12:25:33] 2025-10-11 16:24:41,620 | INFO     | ..............................
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . Timing measurements:
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . get job = 0 s
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . initial setup = 2 s
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . payload setup = 4 s
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . stage-in = 0 s
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . payload execution = 1666 s
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . stage-out = 0 s
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | . log creation = 0 s
[2025-10-11 12:25:33] 2025-10-11 16:24:41,621 | INFO     | ..............................
[2025-10-11 12:25:33] 2025-10-11 16:24:42,090 | INFO     | 
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | job summary report
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | --------------------------------------------------
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | PanDA job id: 6838001053
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | task id: 46676269
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | errors: (none)
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | pilot state: finished 
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | transexitcode: 0
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | exeerrorcode: 0
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | exeerrordiag: 
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | exitcode: 0
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | exitmsg: OK
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | cpuconsumptiontime: 17294 s
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | nevents: 400
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | neventsw: 0
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | pid: 1470722
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | pgrp: 1470722
[2025-10-11 12:25:33] 2025-10-11 16:24:42,091 | INFO     | corecount: 12
[2025-10-11 12:25:33] 2025-10-11 16:24:42,092 | INFO     | event service: False
[2025-10-11 12:25:33] 2025-10-11 16:24:42,092 | INFO     | sizes: {0: 2348856, 4: 2349118, 11: 2349146, 1674: 2374014, 1675: 2383012, 1676: 2383068, 1682: 2383390}
[2025-10-11 12:25:33] 2025-10-11 16:24:42,092 | INFO     | --------------------------------------------------
[2025-10-11 12:25:33] 2025-10-11 16:24:42,092 | INFO     | 
[2025-10-11 12:25:33] 2025-10-11 16:24:42,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-11 12:25:33] 2025-10-11 16:24:42,108 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,109 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 12:25:33] 2025-10-11 16:24:42,110 | INFO     | job 6838001053 has completed (purged errors)
[2025-10-11 12:25:33] 2025-10-11 16:24:42,110 | INFO     | overall cleanup function is called
[2025-10-11 12:25:33] 2025-10-11 16:24:43,117 | INFO     | --- collectZombieJob: --- 10, [1470722]
[2025-10-11 12:25:33] 2025-10-11 16:24:43,118 | INFO     | zombie collector waiting for pid 1470722
[2025-10-11 12:25:33] 2025-10-11 16:24:43,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 12:25:33] 2025-10-11 16:24:43,118 | INFO     | collected zombie processes
[2025-10-11 12:25:33] 2025-10-11 16:24:43,118 | INFO     | will attempt to kill all subprocesses of pid=1470722
[2025-10-11 12:25:33] 2025-10-11 16:24:43,504 | INFO     | process IDs to be killed: [1470722] (in reverse order)
[2025-10-11 12:25:33] 2025-10-11 16:24:43,634 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 12:25:33] 2025-10-11 16:24:43,635 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 12:25:33] 2025-10-11 16:24:43,653 | INFO     | did not find any defunct processes belonging to 1470722
[2025-10-11 12:25:33] 2025-10-11 16:24:43,668 | INFO     | did not find any defunct processes belonging to 1470722
[2025-10-11 12:25:33] 2025-10-11 16:24:43,669 | INFO     | ready for new job
[2025-10-11 12:25:33] 2025-10-11 16:24:43,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 12:25:33] 2025-10-11 16:24:43,670 | INFO     | ***************************************
[2025-10-11 12:25:33] 2025-10-11 16:24:43,670 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 12:25:33] 2025-10-11 16:24:43,670 | INFO     | ***************************************
[2025-10-11 12:25:33] 2025-10-11 16:24:43,670 | INFO     | 
[2025-10-11 12:25:33] 2025-10-11 16:24:43,688 | INFO     | architecture information:
[2025-10-11 12:25:33] 2025-10-11 16:24:43,688 | INFO     | executing command: cat /etc/os-release
[2025-10-11 12:25:33] 2025-10-11 16:24:43,703 | INFO     | cat /etc/os-release:
[2025-10-11 12:25:33] NAME="CentOS Linux"
[2025-10-11 12:25:33] VERSION="7 (Core)"
[2025-10-11 12:25:33] ID="centos"
[2025-10-11 12:25:33] ID_LIKE="rhel fedora"
[2025-10-11 12:25:33] VERSION_ID="7"
[2025-10-11 12:25:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 12:25:33] ANSI_COLOR="0;31"
[2025-10-11 12:25:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 12:25:33] HOME_URL="https://www.centos.org/"
[2025-10-11 12:25:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 12:25:33] 
[2025-10-11 12:25:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 12:25:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 12:25:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 12:25:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 12:25:33] 
[2025-10-11 12:25:33] 2025-10-11 16:24:43,703 | INFO     | ***************************************
[2025-10-11 12:25:33] 2025-10-11 16:24:44,206 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-11 12:25:33] 2025-10-11 16:24:44,221 | INFO     | sufficient remaining disk space (90847576064 B)
[2025-10-11 12:25:33] 2025-10-11 16:24:44,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 12:25:33] 2025-10-11 16:24:44,222 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 12:25:33] 2025-10-11 16:24:44,222 | INFO     | update_server=False
[2025-10-11 12:25:33] 2025-10-11 16:24:44,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 12:25:33] 2025-10-11 16:24:44,801 | INFO     | all data control threads have been joined
[2025-10-11 12:25:33] 2025-10-11 16:24:45,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:25:33] 2025-10-11 16:24:45,170 | INFO     | aborting loop
[2025-10-11 12:25:33] 2025-10-11 16:24:45,205 | INFO     | all job control threads have been joined
[2025-10-11 12:25:33] 2025-10-11 16:24:45,227 | INFO     | all payload control threads have been joined
[2025-10-11 12:25:33] 2025-10-11 16:24:45,227 | INFO     | [job] retrieve thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:45,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 12:25:33] 2025-10-11 16:24:45,289 | INFO     | [payload] failed_post thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:45,408 | INFO     | [data] copytool_in thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:45,620 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:45,807 | INFO     | [data] control thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:45,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,053 | INFO     | [job] validate thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,175 | INFO     | [job] job monitor thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,210 | INFO     | [job] control thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,228 | INFO     | [payload] control thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,274 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,278 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,376 | INFO     | [payload] validate_post thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:46,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:25:33] 2025-10-11 16:24:46,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 12:25:33] 2025-10-11 16:24:47,243 | INFO     | [data] copytool_out thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:47,692 | INFO     | [job] queue monitor thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:24:50,730 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 12:25:33] 2025-10-11 16:25:14,387 | INFO     | PID=1461983 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:25:33] 2025-10-11 16:25:14,388 | INFO     | .. there are 11 such processes running
[2025-10-11 12:25:33] 2025-10-11 16:25:14,389 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 12:25:33] 2025-10-11 16:25:14,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 12:25:33] 2025-10-11 16:25:14,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 12:25:33] 2025-10-11 16:25:27,068 | INFO     | [monitor] cgroup control has ended
[2025-10-11 12:25:33] 2025-10-11 16:25:27,836 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140008775198528)>', '<ExcThread(monitor, started 140008149219072)>']
[2025-10-11 12:25:33] 2025-10-11 16:25:28,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 12:25:33] 2025-10-11 16:25:28,457 | INFO     | [monitor] control thread has ended
[2025-10-11 12:25:33] 2025-10-11 16:25:32,861 | INFO     | all workflow threads have been joined
[2025-10-11 12:25:33] 2025-10-11 16:25:32,861 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 12:25:33] 2025-10-11 16:25:32,862 | INFO     | traces error code: 0
[2025-10-11 12:25:33] 2025-10-11 16:25:32,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 12:25:33] 2025-10-11 16:25:32,939 [wrapper] ==== pilot stdout END ====
[2025-10-11 12:25:33] 2025-10-11 16:25:32,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 12:25:33] 2025-10-11 16:25:32,942 [wrapper] pilotpid: 1461983
[2025-10-11 12:25:33] 2025-10-11 16:25:32,943 [wrapper] Pilot exit status: 0
[2025-10-11 12:25:33] 2025-10-11 16:25:32,951 [wrapper] pandaids: 6838001053
[2025-10-11 12:25:33] 2025-10-11 16:25:33,046 [wrapper] cleanup supervisor_pilot 1583963 1461984
[2025-10-11 12:25:33] 2025-10-11 16:25:33,049 [wrapper] Test setup, not cleaning
[2025-10-11 12:25:33] 2025-10-11 16:25:33,051 [wrapper] apfmon messages muted
[2025-10-11 12:25:33] 2025-10-11 16:25:33,054 [wrapper] ==== wrapper stdout END ====
[2025-10-11 12:25:33] 2025-10-11 16:25:33,056 [wrapper] ==== wrapper stderr END ====
[2025-10-11 12:25:33]  *** Error codes and diagnostics ***
[2025-10-11 12:25:33]     "exeErrorCode": 0,
[2025-10-11 12:25:33]     "exeErrorDiag": "",
[2025-10-11 12:25:33]     "pilotErrorCode": 0,
[2025-10-11 12:25:33]     "pilotErrorDiag": "",
[2025-10-11 12:25:33]  *** Listing of results directory ***
[2025-10-11 12:25:33] total 413184
[2025-10-11 12:25:33] -rwx------. 1 boincer umatlas     36292 Oct 10 23:19 runpilot2-wrapper.sh
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 23:19 queuedata.json
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 23:19 pilot3.tar.gz
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas       100 Oct 11 11:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 12:25:33] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 11:56 run_atlas
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas       105 Oct 11 11:56 job.xml
[2025-10-11 12:25:33] -rw-r--r--. 2 boincer umatlas 221410916 Oct 11 11:56 EVNT.46676267._002019.pool.root.1
[2025-10-11 12:25:33] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 11:56 start_atlas.sh
[2025-10-11 12:25:33] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 11:56 shared
[2025-10-11 12:25:33] -rw-r--r--. 2 boincer umatlas    569667 Oct 11 11:56 input.tar.gz
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas         0 Oct 11 11:56 boinc_lockfile
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 11:56 pandaJob.out
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas    975512 Oct 11 11:56 agis_schedconf.cvmfs.json
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas   1560580 Oct 11 11:56 agis_ddmendpoints.agis.ALL.json
[2025-10-11 12:25:33] drwx------. 5 boincer umatlas      4096 Oct 11 11:56 pilot3
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 12:20 init_data.xml
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas 196507306 Oct 11 12:24 HITS.46676269._050165.pool.root.1
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas       529 Oct 11 12:24 boinc_task_state.xml
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas      1030 Oct 11 12:24 memory_monitor_summary.json
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas    357489 Oct 11 12:24 log.46676269._050165.job.log.tgz.1
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas      7772 Oct 11 12:24 heartbeat.json
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas        95 Oct 11 12:25 pilot_heartbeat.json
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas        27 Oct 11 12:25 wrapper_checkpoint.txt
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 12:25 boinc_mmap_file
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas      4824 Oct 11 12:25 pilotlog.txt
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas    281018 Oct 11 12:25 log.46676269._050165.job.log.1
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas       357 Oct 11 12:25 output.list
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas       620 Oct 11 12:25 runtime_log
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas    655360 Oct 11 12:25 result.tar.gz
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas       649 Oct 11 12:25 ygbMDmvJfR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmP3QMDmdkbRUn.diag
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 12:25 runtime_log.err
[2025-10-11 12:25:33] -rw-r--r--. 1 boincer umatlas     21943 Oct 11 12:25 stderr.txt
[2025-10-11 12:25:33] HITS file was successfully produced:
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas 196507306 Oct 11 12:24 shared/HITS.pool.root.1
[2025-10-11 12:25:33]  *** Contents of shared directory: ***
[2025-10-11 12:25:33] total 409352
[2025-10-11 12:25:33] -rw-r--r--. 2 boincer umatlas 221410916 Oct 11 11:56 ATLAS.root_0
[2025-10-11 12:25:33] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 11:56 start_atlas.sh
[2025-10-11 12:25:33] -rw-r--r--. 2 boincer umatlas    569667 Oct 11 11:56 input.tar.gz
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas 196507306 Oct 11 12:24 HITS.pool.root.1
[2025-10-11 12:25:33] -rw-------. 1 boincer umatlas    655360 Oct 11 12:25 result.tar.gz
12:25:34 (1458254): run_atlas exited; CPU time 17332.043343
12:25:34 (1458254): called boinc_finish(0)

</stderr_txt>
]]>

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