Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:24:26 (2476323): wrapper (7.7.26015): starting
02:24:26 (2476323): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 02:24:26] Arguments: --nthreads 6
[2025-10-12 02:24:26] Threads: 6
[2025-10-12 02:24:26] Checking for CVMFS
[2025-10-12 02:24:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:24:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:24:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:24:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:24:26] 2.11.5.0 3651556 3155 71000 151591 2 57 38521018 52428800 1858 130560 0 9531048 99.997 107101 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 02:24:26] CVMFS is ok
[2025-10-12 02:24:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:24:26] Checking for apptainer binary...
[2025-10-12 02:24:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:24:26] Running /usr/bin/apptainer --version
[2025-10-12 02:24:26] apptainer version 1.3.5-1.el9
[2025-10-12 02:24:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:24:26] testio008
[2025-10-12 02:24:26] apptainer works
[2025-10-12 02:24:26] Set ATHENA_PROC_NUMBER=6
[2025-10-12 02:24:26] Set ATHENA_CORE_NUMBER=6
[2025-10-12 02:24:26] Starting ATLAS job with PandaID=6838063643
[2025-10-12 02:24:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:32:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:32:05]  mtime=0
[2025-10-12 03:32:05]  protocol_id=None
[2025-10-12 03:32:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 03:32:05]  replicas=None
[2025-10-12 03:32:05]  scope=mc23_13p6TeV
[2025-10-12 03:32:05]  status=None
[2025-10-12 03:32:05]  status_code=0
[2025-10-12 03:32:05]  storage_token=
[2025-10-12 03:32:05]  surl=/var/lib/boinc/slots/11/PanDA_Pilot-6838063643/log.46676269._050520.job.log.tgz.1
[2025-10-12 03:32:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/e1/log.46676269._050520.job.log.tgz.1
[2025-10-12 03:32:05]  workdir=None
[2025-10-12 03:32:05] ]
[2025-10-12 03:32:05] 2025-10-11 18:31:31,514 | INFO     | transferring file log.46676269._050520.job.log.tgz.1 from /var/lib/boinc/slots/11/PanDA_Pilot-6838063643/log.46676269._050520.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 03:32:05] 2025-10-11 18:31:31,514 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/11/PanDA_Pilot-6838063643/log.46676269._050520.job.log.tgz.1 /var/lib/boinc/slots/11/log.46676269._050520.j
[2025-10-12 03:32:05] 2025-10-11 18:31:31,522 | INFO     | adding to output.list: log.46676269._050520.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/e1/log.46676269._050520.job.log.tg
[2025-10-12 03:32:05] 2025-10-11 18:31:31,522 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 03:32:05] 2025-10-11 18:31:31,523 | INFO     | summary of transferred files:
[2025-10-12 03:32:05] 2025-10-11 18:31:31,523 | INFO     |  -- lfn=log.46676269._050520.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 03:32:05] 2025-10-11 18:31:31,523 | INFO     | stage-out finished correctly
[2025-10-12 03:32:05] 2025-10-11 18:31:31,664 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 03:32:05] 2025-10-11 18:31:31,707 | INFO     | job 6838063643 has state=finished
[2025-10-12 03:32:05] 2025-10-11 18:31:31,707 | INFO     | preparing for final server update for job 6838063643 in state='finished'
[2025-10-12 03:32:05] 2025-10-11 18:31:31,707 | INFO     | this job has now completed (state=finished)
[2025-10-12 03:32:05] 2025-10-11 18:31:31,707 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 03:32:05] 2025-10-11 18:31:31,707 | INFO     | log transfer has been attempted: DONE
[2025-10-12 03:32:05] 2025-10-11 18:31:31,707 | INFO     | job 6838063643 has finished - writing final server update
[2025-10-12 03:32:05] 2025-10-11 18:31:31,708 | INFO     | total number of processed events: 400 (read)
[2025-10-12 03:32:05] 2025-10-11 18:31:31,708 | INFO     | executing command: lscpu
[2025-10-12 03:32:05] 2025-10-11 18:31:31,718 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 03:32:05] 2025-10-11 18:31:31,875 | INFO     | time since job start (4000s) is within the limit (172800.0s)
[2025-10-12 03:32:05] 2025-10-11 18:31:33,492 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 03:32:05] 2025-10-11 18:31:33,494 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4104.2812
[2025-10-12 03:32:05] 2025-10-11 18:31:33,495 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6838063643/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:32:05] 2025-10-11 18:31:33,496 | INFO     | extracted standard info from prmon json
[2025-10-12 03:32:05] 2025-10-11 18:31:33,496 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:32:05] 2025-10-11 18:31:33,496 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:32:05] 2025-10-11 18:31:33,496 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:32:05] 2025-10-11 18:31:33,496 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | sum of deviations: -4167974877.0
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | mean x: 1760205582.0
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | mean y: 2538106.8983050846
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | -- intersect: 115236052411.89201
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | intersect: 115236052411.89201
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | chi2: 0.029591403340527674
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | -- intersect: 115236052411.89201
[2025-10-12 03:32:05] 2025-10-11 18:31:33,497 | INFO     | current memory leak: -65.47 B/s (using 59 data points, chi2=0.03)
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | could have reported an average CPU frequency of 3711 MHz (6 samples)
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | ..............................
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . Timing measurements:
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . get job = 0 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . initial setup = 21 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . payload setup = 2 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . stage-in = 0 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . payload execution = 3981 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . stage-out = 0 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | . log creation = 0 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,498 | INFO     | ..............................
[2025-10-12 03:32:05] 2025-10-11 18:31:33,803 | INFO     | 
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | job summary report
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | --------------------------------------------------
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | PanDA job id: 6838063643
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | task id: 46676269
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | errors: (none)
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | pilot state: finished 
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | transexitcode: 0
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | exeerrorcode: 0
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | exeerrordiag: 
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | exitcode: 0
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | exitmsg: OK
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | cpuconsumptiontime: 21434 s
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | nevents: 400
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | neventsw: 0
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | pid: 2489140
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | pgrp: 2489140
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | corecount: 6
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | event service: False
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | sizes: {0: 2348858, 2: 2349120, 10: 2349148, 3987: 2384077, 3988: 2384077, 3989: 2384271}
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | --------------------------------------------------
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | 
[2025-10-12 03:32:05] 2025-10-11 18:31:33,804 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,812 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,813 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:32:05] 2025-10-11 18:31:33,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,813 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:32:05] 2025-10-11 18:31:33,813 | INFO     | job 6838063643 has completed (purged errors)
[2025-10-12 03:32:05] 2025-10-11 18:31:33,813 | INFO     | overall cleanup function is called
[2025-10-12 03:32:05] 2025-10-11 18:31:34,818 | INFO     | --- collectZombieJob: --- 10, [2489140]
[2025-10-12 03:32:05] 2025-10-11 18:31:34,819 | INFO     | zombie collector waiting for pid 2489140
[2025-10-12 03:32:05] 2025-10-11 18:31:34,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:32:05] 2025-10-11 18:31:34,819 | INFO     | collected zombie processes
[2025-10-12 03:32:05] 2025-10-11 18:31:34,819 | INFO     | will attempt to kill all subprocesses of pid=2489140
[2025-10-12 03:32:05] 2025-10-11 18:31:34,854 | INFO     | process IDs to be killed: [2489140] (in reverse order)
[2025-10-12 03:32:05] 2025-10-11 18:31:34,873 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:32:05] 2025-10-11 18:31:34,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:32:05] 2025-10-11 18:31:34,875 | INFO     | did not find any defunct processes belonging to 2489140
[2025-10-12 03:32:05] 2025-10-11 18:31:34,876 | INFO     | did not find any defunct processes belonging to 2489140
[2025-10-12 03:32:05] 2025-10-11 18:31:34,876 | INFO     | ready for new job
[2025-10-12 03:32:05] 2025-10-11 18:31:34,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:32:05] 2025-10-11 18:31:34,877 | INFO     | ***************************************
[2025-10-12 03:32:05] 2025-10-11 18:31:34,877 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:32:05] 2025-10-11 18:31:34,877 | INFO     | ***************************************
[2025-10-12 03:32:05] 2025-10-11 18:31:34,877 | INFO     | 
[2025-10-12 03:32:05] 2025-10-11 18:31:34,878 | INFO     | architecture information:
[2025-10-12 03:32:05] 2025-10-11 18:31:34,878 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:32:05] 2025-10-11 18:31:34,884 | INFO     | cat /etc/os-release:
[2025-10-12 03:32:05] NAME="CentOS Linux"
[2025-10-12 03:32:05] VERSION="7 (Core)"
[2025-10-12 03:32:05] ID="centos"
[2025-10-12 03:32:05] ID_LIKE="rhel fedora"
[2025-10-12 03:32:05] VERSION_ID="7"
[2025-10-12 03:32:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:32:05] ANSI_COLOR="0;31"
[2025-10-12 03:32:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:32:05] HOME_URL="https://www.centos.org/"
[2025-10-12 03:32:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:32:05] 
[2025-10-12 03:32:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:32:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:32:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:32:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:32:05] 
[2025-10-12 03:32:05] 2025-10-11 18:31:34,884 | INFO     | ***************************************
[2025-10-12 03:32:05] 2025-10-11 18:31:35,387 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-10-12 03:32:05] 2025-10-11 18:31:35,395 | INFO     | sufficient remaining disk space (281688408064 B)
[2025-10-12 03:32:05] 2025-10-11 18:31:35,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:32:05] 2025-10-11 18:31:35,395 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:32:05] 2025-10-11 18:31:35,395 | INFO     | update_server=False
[2025-10-12 03:32:05] 2025-10-11 18:31:35,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:32:05] 2025-10-11 18:31:35,395 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:32:05] 2025-10-11 18:31:35,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:32:05] 2025-10-11 18:31:35,733 | INFO     | all data control threads have been joined
[2025-10-12 03:32:05] 2025-10-11 18:31:36,071 | INFO     | all payload control threads have been joined
[2025-10-12 03:32:05] 2025-10-11 18:31:36,090 | INFO     | all job control threads have been joined
[2025-10-12 03:32:05] 2025-10-11 18:31:36,399 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,400 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,558 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,595 | INFO     | [job] validate thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,636 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,735 | INFO     | [data] control thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,757 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,896 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:36,911 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:32:05] 2025-10-11 18:31:37,020 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:37,058 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:37,077 | INFO     | [payload] control thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:37,095 | INFO     | [job] control thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:37,401 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:37,434 | WARNING  | process 2489140 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 03:32:05] 2025-10-11 18:31:37,463 | INFO     | using path: /var/lib/boinc/slots/11/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:32:05] 2025-10-11 18:31:37,499 | INFO     | number of running child processes to parent process 2489140: 1
[2025-10-12 03:32:05] 2025-10-11 18:31:37,499 | INFO     | maximum number of monitored processes: 6
[2025-10-12 03:32:05] 2025-10-11 18:31:37,500 | INFO     | aborting job monitoring since job object (job id=6838063643) has expired
[2025-10-12 03:32:05] 2025-10-11 18:31:37,500 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:32:05] 2025-10-11 18:31:37,500 | INFO     | will abort loop
[2025-10-12 03:32:05] 2025-10-11 18:31:37,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:32:05] 2025-10-11 18:31:37,916 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:38,505 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:41,718 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:32:05] 2025-10-11 18:31:57,881 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:32:05] 2025-10-11 18:31:59,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484041238336)>', '<ExcThread(monitor, started 140483405801216)>']
[2025-10-12 03:32:05] 2025-10-11 18:32:04,083 | INFO     | all workflow threads have been joined
[2025-10-12 03:32:05] 2025-10-11 18:32:04,083 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:32:05] 2025-10-11 18:32:04,083 | INFO     | traces error code: 0
[2025-10-12 03:32:05] 2025-10-11 18:32:04,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:32:05] 2025-10-11 18:32:04,977 | INFO     | PID=2480127 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:32:05] 2025-10-11 18:32:04,978 | INFO     | .. there are 3 such processes running
[2025-10-12 03:32:05] 2025-10-11 18:32:04,978 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:32:05] 2025-10-11 18:32:04,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:32:05] 2025-10-11 18:32:04,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:32:05] 2025-10-11 18:32:04,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:32:05] 2025-10-11 18:32:04,978 | INFO     | [monitor] control thread has ended
[2025-10-12 03:32:05] 2025-10-11 18:32:05,036 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:32:05] 2025-10-11 18:32:05,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:32:05] 2025-10-11 18:32:05,038 [wrapper] pilotpid: 2480127
[2025-10-12 03:32:05] 2025-10-11 18:32:05,039 [wrapper] Pilot exit status: 0
[2025-10-12 03:32:05] 2025-10-11 18:32:05,043 [wrapper] pandaids: 6838063643
[2025-10-12 03:32:05] 2025-10-11 18:32:05,053 [wrapper] cleanup supervisor_pilot 2539892 2480128
[2025-10-12 03:32:05] 2025-10-11 18:32:05,056 [wrapper] Test setup, not cleaning
[2025-10-12 03:32:05] 2025-10-11 18:32:05,057 [wrapper] apfmon messages muted
[2025-10-12 03:32:05] 2025-10-11 18:32:05,058 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:32:05] 2025-10-11 18:32:05,058 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:32:05]  *** Error codes and diagnostics ***
[2025-10-12 03:32:05]     "exeErrorCode": 0,
[2025-10-12 03:32:05]     "exeErrorDiag": "",
[2025-10-12 03:32:05]     "pilotErrorCode": 0,
[2025-10-12 03:32:05]     "pilotErrorDiag": "",
[2025-10-12 03:32:05]  *** Listing of results directory ***
[2025-10-12 03:32:05] total 404680
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc    557409 Oct 11 12:42 pilot3.tar.gz
[2025-10-12 03:32:05] -rwx------. 1 boinc boinc     36292 Oct 11 13:05 runpilot2-wrapper.sh
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc      5112 Oct 11 13:05 queuedata.json
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc       100 Oct 12 02:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:32:05] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 02:24 run_atlas
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc       105 Oct 12 02:24 job.xml
[2025-10-12 03:32:05] -rw-r--r--. 2 boinc boinc     15120 Oct 12 02:24 start_atlas.sh
[2025-10-12 03:32:05] drwxrwx--x. 2 boinc boinc        68 Oct 12 02:24 shared
[2025-10-12 03:32:05] -rw-r--r--. 2 boinc boinc    569676 Oct 12 02:24 input.tar.gz
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc      9510 Oct 12 02:24 init_data.xml
[2025-10-12 03:32:05] -rw-r--r--. 2 boinc boinc 220010706 Oct 12 02:24 EVNT.46676267._002033.pool.root.1
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc         0 Oct 12 02:24 boinc_lockfile
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc      2550 Oct 12 02:24 pandaJob.out
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc    975520 Oct 12 02:24 agis_schedconf.cvmfs.json
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc   1560580 Oct 12 02:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:32:05] drwx------. 5 boinc boinc      4096 Oct 12 02:24 pilot3
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc       529 Oct 12 03:31 boinc_task_state.xml
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc 188719328 Oct 12 03:31 HITS.46676269._050520.pool.root.1
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc      1019 Oct 12 03:31 memory_monitor_summary.json
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc    278923 Oct 12 03:31 log.46676269._050520.job.log.tgz.1
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc      7767 Oct 12 03:31 heartbeat.json
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc      8192 Oct 12 03:31 boinc_mmap_file
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc        27 Oct 12 03:31 wrapper_checkpoint.txt
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc       822 Oct 12 03:32 pilotlog.txt
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc        95 Oct 12 03:32 pilot_heartbeat.json
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc    607389 Oct 12 03:32 log.46676269._050520.job.log.1
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc       357 Oct 12 03:32 output.list
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc       620 Oct 12 03:32 runtime_log
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc    901120 Oct 12 03:32 result.tar.gz
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc       641 Oct 12 03:32 X7KNDmE2fR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgLfNDmCXV0rn.diag
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc      8675 Oct 12 03:32 runtime_log.err
[2025-10-12 03:32:05] -rw-r--r--. 1 boinc boinc     21328 Oct 12 03:32 stderr.txt
[2025-10-12 03:32:05] HITS file was successfully produced:
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc 188719328 Oct 12 03:31 shared/HITS.pool.root.1
[2025-10-12 03:32:05]  *** Contents of shared directory: ***
[2025-10-12 03:32:05] total 400612
[2025-10-12 03:32:05] -rw-r--r--. 2 boinc boinc     15120 Oct 12 02:24 start_atlas.sh
[2025-10-12 03:32:05] -rw-r--r--. 2 boinc boinc    569676 Oct 12 02:24 input.tar.gz
[2025-10-12 03:32:05] -rw-r--r--. 2 boinc boinc 220010706 Oct 12 02:24 ATLAS.root_0
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc 188719328 Oct 12 03:31 HITS.pool.root.1
[2025-10-12 03:32:05] -rw-------. 1 boinc boinc    901120 Oct 12 03:32 result.tar.gz
03:32:06 (2476323): run_atlas exited; CPU time 21461.081708
03:32:06 (2476323): called boinc_finish(0)

</stderr_txt>
]]>

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