Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:00:30 (3090409): wrapper (7.7.26015): starting
02:00:30 (3090409): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 02:00:30] Arguments: --nthreads 4
[2025-10-12 02:00:30] Threads: 4
[2025-10-12 02:00:30] Checking for CVMFS
[2025-10-12 02:00:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:00:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:00:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:00:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:00:30] 2.9.2.0 1854055 3557 97204 151600 3 57 29399595 36864001 0 130560 0 3208738 99.992 119004 1047 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 02:00:30] CVMFS is ok
[2025-10-12 02:00:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:00:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:00:30] Further information can be found at the LHC@home message board.
[2025-10-12 02:00:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:00:30] Checking for apptainer binary...
[2025-10-12 02:00:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:00:30] Running /usr/bin/apptainer --version
[2025-10-12 02:00:30] apptainer version 1.4.1-1.1
[2025-10-12 02:00:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:00:30] thA332a
[2025-10-12 02:00:30] apptainer works
[2025-10-12 02:00:30] Set ATHENA_PROC_NUMBER=4
[2025-10-12 02:00:30] Set ATHENA_CORE_NUMBER=4
[2025-10-12 02:00:30] Starting ATLAS job with PandaID=6835983533
[2025-10-12 02:00:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:13:50]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | job 6835983533 has completed (purged errors)
[2025-10-12 03:13:50] 2025-10-12 01:13:12,319 | INFO     | overall cleanup function is called
[2025-10-12 03:13:50] 2025-10-12 01:13:13,326 | INFO     | --- collectZombieJob: --- 10, [3100752]
[2025-10-12 03:13:50] 2025-10-12 01:13:13,326 | INFO     | zombie collector waiting for pid 3100752
[2025-10-12 03:13:50] 2025-10-12 01:13:13,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:13:50] 2025-10-12 01:13:13,327 | INFO     | collected zombie processes
[2025-10-12 03:13:50] 2025-10-12 01:13:13,327 | INFO     | will attempt to kill all subprocesses of pid=3100752
[2025-10-12 03:13:50] 2025-10-12 01:13:13,372 | INFO     | process IDs to be killed: [3100752] (in reverse order)
[2025-10-12 03:13:50] 2025-10-12 01:13:13,404 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:13:50] 2025-10-12 01:13:13,405 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:13:50] 2025-10-12 01:13:13,406 | INFO     | did not find any defunct processes belonging to 3100752
[2025-10-12 03:13:50] 2025-10-12 01:13:13,408 | INFO     | did not find any defunct processes belonging to 3100752
[2025-10-12 03:13:50] 2025-10-12 01:13:13,408 | INFO     | ready for new job
[2025-10-12 03:13:50] 2025-10-12 01:13:13,408 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:13:50] 2025-10-12 01:13:13,409 | INFO     | ***************************************
[2025-10-12 03:13:50] 2025-10-12 01:13:13,409 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:13:50] 2025-10-12 01:13:13,409 | INFO     | ***************************************
[2025-10-12 03:13:50] 2025-10-12 01:13:13,409 | INFO     | 
[2025-10-12 03:13:50] 2025-10-12 01:13:13,409 | INFO     | architecture information:
[2025-10-12 03:13:50] 2025-10-12 01:13:13,409 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:13:50] 2025-10-12 01:13:13,423 | INFO     | cat /etc/os-release:
[2025-10-12 03:13:50] NAME="CentOS Linux"
[2025-10-12 03:13:50] VERSION="7 (Core)"
[2025-10-12 03:13:50] ID="centos"
[2025-10-12 03:13:50] ID_LIKE="rhel fedora"
[2025-10-12 03:13:50] VERSION_ID="7"
[2025-10-12 03:13:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:13:50] ANSI_COLOR="0;31"
[2025-10-12 03:13:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:13:50] HOME_URL="https://www.centos.org/"
[2025-10-12 03:13:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:13:50] 
[2025-10-12 03:13:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:13:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:13:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:13:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:13:50] 
[2025-10-12 03:13:50] 2025-10-12 01:13:13,423 | INFO     | ***************************************
[2025-10-12 03:13:50] 2025-10-12 01:13:13,927 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 03:13:50] 2025-10-12 01:13:13,945 | INFO     | sufficient remaining disk space (330419929088 B)
[2025-10-12 03:13:50] 2025-10-12 01:13:13,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:13:50] 2025-10-12 01:13:13,945 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:13:50] 2025-10-12 01:13:13,945 | INFO     | update_server=False
[2025-10-12 03:13:50] 2025-10-12 01:13:13,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:13:50] 2025-10-12 01:13:13,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:13:50] 2025-10-12 01:13:13,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:13:50] 2025-10-12 01:13:13,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:13:50] 2025-10-12 01:13:13,946 | INFO     | aborting loop
[2025-10-12 03:13:50] 2025-10-12 01:13:14,092 | INFO     | all job control threads have been joined
[2025-10-12 03:13:50] 2025-10-12 01:13:14,349 | INFO     | all data control threads have been joined
[2025-10-12 03:13:50] 2025-10-12 01:13:14,362 | INFO     | all payload control threads have been joined
[2025-10-12 03:13:50] 2025-10-12 01:13:14,951 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:14,951 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:14,952 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:14,970 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,051 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,098 | INFO     | [job] control thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,136 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,355 | INFO     | [data] control thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,368 | INFO     | [payload] control thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,443 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,518 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,948 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:15,997 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:16,324 | INFO     | [job] validate thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:16,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:13:50] 2025-10-12 01:13:20,937 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:24,524 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:13:50] 2025-10-12 01:13:25,530 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:13:50] 2025-10-12 01:13:43,370 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:13:50] 2025-10-12 01:13:43,828 | INFO     | PID=3094184 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:13:50] 2025-10-12 01:13:43,828 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:13:50] 2025-10-12 01:13:43,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:13:50] 2025-10-12 01:13:43,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:13:50] 2025-10-12 01:13:45,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140126307624768)>', '<ExcThread(monitor, started 140125354833664)>']
[2025-10-12 03:13:50] 2025-10-12 01:13:45,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:13:50] 2025-10-12 01:13:45,840 | INFO     | [monitor] control thread has ended
[2025-10-12 03:13:50] 2025-10-12 01:13:50,065 | INFO     | all workflow threads have been joined
[2025-10-12 03:13:50] 2025-10-12 01:13:50,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:13:50] 2025-10-12 01:13:50,065 | INFO     | traces error code: 0
[2025-10-12 03:13:50] 2025-10-12 01:13:50,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:13:50] 2025-10-12 01:13:50,147 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:13:50] 2025-10-12 01:13:50,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:13:50] 2025-10-12 01:13:50,155 [wrapper] pilotpid: 3094184
[2025-10-12 03:13:50] 2025-10-12 01:13:50,159 [wrapper] Pilot exit status: 0
[2025-10-12 03:13:50] 2025-10-12 01:13:50,172 [wrapper] pandaids: 6835983533
[2025-10-12 03:13:50] 2025-10-12 01:13:50,195 [wrapper] cleanup supervisor_pilot 3110519 3094185
[2025-10-12 03:13:50] 2025-10-12 01:13:50,199 [wrapper] Test setup, not cleaning
[2025-10-12 03:13:50] 2025-10-12 01:13:50,203 [wrapper] apfmon messages muted
[2025-10-12 03:13:50] 2025-10-12 01:13:50,207 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:13:50] 2025-10-12 01:13:50,211 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:13:50]  *** Error codes and diagnostics ***
[2025-10-12 03:13:50]     "exeErrorCode": 0,
[2025-10-12 03:13:50]     "exeErrorDiag": "",
[2025-10-12 03:13:50]     "pilotErrorCode": 0,
[2025-10-12 03:13:50]     "pilotErrorDiag": "",
[2025-10-12 03:13:50]  *** Listing of results directory ***
[2025-10-12 03:13:50] total 406864
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc    557409 Oct  8 12:04 pilot3.tar.gz
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc      5112 Oct  8 12:07 queuedata.json
[2025-10-12 03:13:50] -rwx------ 1 boinc boinc     36292 Oct  8 12:07 runpilot2-wrapper.sh
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc       100 Oct 12 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:13:50] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 02:00 run_atlas
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc       105 Oct 12 02:00 job.xml
[2025-10-12 03:13:50] -rw-r--r-- 2 boinc boinc 219297183 Oct 12 02:00 EVNT.46676267._000196.pool.root.1
[2025-10-12 03:13:50] -rw-r--r-- 2 boinc boinc    569678 Oct 12 02:00 input.tar.gz
[2025-10-12 03:13:50] -rw-r--r-- 2 boinc boinc     15120 Oct 12 02:00 start_atlas.sh
[2025-10-12 03:13:50] drwxrwx--x 2 boinc boinc      4096 Oct 12 02:00 shared
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc         0 Oct 12 02:00 boinc_setup_complete
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc      6371 Oct 12 02:00 init_data.xml
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc         0 Oct 12 02:00 boinc_lockfile
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc      2548 Oct 12 02:00 pandaJob.out
[2025-10-12 03:13:50] -rw------- 1 boinc boinc    975528 Oct 12 02:00 agis_schedconf.cvmfs.json
[2025-10-12 03:13:50] -rw------- 1 boinc boinc   1560580 Oct 12 02:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:13:50] drwx------ 5 boinc boinc      4096 Oct 12 02:00 pilot3
[2025-10-12 03:13:50] -rw------- 1 boinc boinc 191605506 Oct 12 03:12 HITS.46676269._004973.pool.root.1
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc       529 Oct 12 03:12 boinc_task_state.xml
[2025-10-12 03:13:50] -rw------- 1 boinc boinc      1019 Oct 12 03:13 memory_monitor_summary.json
[2025-10-12 03:13:50] -rw------- 1 boinc boinc        95 Oct 12 03:13 pilot_heartbeat.json
[2025-10-12 03:13:50] -rw------- 1 boinc boinc    267597 Oct 12 03:13 log.46676269._004973.job.log.tgz.1
[2025-10-12 03:13:50] -rw------- 1 boinc boinc      7758 Oct 12 03:13 heartbeat.json
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc      8192 Oct 12 03:13 boinc_mmap_file
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc        27 Oct 12 03:13 wrapper_checkpoint.txt
[2025-10-12 03:13:50] -rw------- 1 boinc boinc      4824 Oct 12 03:13 pilotlog.txt
[2025-10-12 03:13:50] -rw------- 1 boinc boinc    645754 Oct 12 03:13 log.46676269._004973.job.log.1
[2025-10-12 03:13:50] -rw------- 1 boinc boinc       357 Oct 12 03:13 output.list
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc       620 Oct 12 03:13 runtime_log
[2025-10-12 03:13:50] -rw------- 1 boinc boinc    931840 Oct 12 03:13 result.tar.gz
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc      8782 Oct 12 03:13 runtime_log.err
[2025-10-12 03:13:50] -rw------- 1 boinc boinc       659 Oct 12 03:13 OFwLDmtFgQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaxXNDmwN8CRn.diag
[2025-10-12 03:13:50] -rw-r--r-- 1 boinc boinc     12444 Oct 12 03:13 stderr.txt
[2025-10-12 03:13:50] HITS file was successfully produced:
[2025-10-12 03:13:50] -rw------- 1 boinc boinc 191605506 Oct 12 03:12 shared/HITS.pool.root.1
[2025-10-12 03:13:50]  *** Contents of shared directory: ***
[2025-10-12 03:13:50] total 402772
[2025-10-12 03:13:50] -rw-r--r-- 2 boinc boinc 219297183 Oct 12 02:00 ATLAS.root_0
[2025-10-12 03:13:50] -rw-r--r-- 2 boinc boinc    569678 Oct 12 02:00 input.tar.gz
[2025-10-12 03:13:50] -rw-r--r-- 2 boinc boinc     15120 Oct 12 02:00 start_atlas.sh
[2025-10-12 03:13:50] -rw------- 1 boinc boinc 191605506 Oct 12 03:12 HITS.pool.root.1
[2025-10-12 03:13:50] -rw------- 1 boinc boinc    931840 Oct 12 03:13 result.tar.gz
03:13:51 (3090409): run_atlas exited; CPU time 16459.452398
03:13:51 (3090409): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN