Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:32:50 (140154): wrapper (7.7.26015): starting
11:32:50 (140154): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 11:32:50] Arguments: --nthreads 8
[2025-10-11 11:32:50] Threads: 8
[2025-10-11 11:32:50] Checking for CVMFS
[2025-10-11 11:32:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 11:32:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 11:32:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 11:32:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 11:32:52] 2.13.2.0 7513 76326 110952 151589 3 571 37076094 40960001 37633 16776704 0 455489159 99.753 287976397 46132 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 11:32:52] CVMFS is ok
[2025-10-11 11:32:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 11:32:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 11:32:52] Further information can be found at the LHC@home message board.
[2025-10-11 11:32:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 11:32:52] Checking for apptainer binary...
[2025-10-11 11:32:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 11:32:52] Running /usr/bin/apptainer --version
[2025-10-11 11:32:52] apptainer version 1.4.3-1.el9
[2025-10-11 11:32:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 11:32:52] c-208-40.aglt2.org
[2025-10-11 11:32:52] apptainer works
[2025-10-11 11:32:53] Set ATHENA_PROC_NUMBER=8
[2025-10-11 11:32:53] Set ATHENA_CORE_NUMBER=8
[2025-10-11 11:32:53] Starting ATLAS job with PandaID=6838119528
[2025-10-11 11:32:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 13:09:31]  *** The last 200 lines of the pilot log: ***
[2025-10-11 13:09:31] 2025-10-11 17:08:25,804 | INFO     | time since job start (5651s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:26,526 | INFO     | monitor loop #383: job 0:6838119528 is in state 'finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:26,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:09:31] 2025-10-11 17:08:27,818 | INFO     | time since job start (5653s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:28,001 | INFO     | job 6838119528 has state=finished
[2025-10-11 13:09:31] 2025-10-11 17:08:28,001 | INFO     | preparing for final server update for job 6838119528 in state='finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:28,002 | INFO     | this job has now completed (state=finished)
[2025-10-11 13:09:31] 2025-10-11 17:08:28,002 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 13:09:31] 2025-10-11 17:08:28,002 | INFO     | log transfer has been attempted: DONE
[2025-10-11 13:09:31] 2025-10-11 17:08:28,002 | INFO     | job 6838119528 has finished - writing final server update
[2025-10-11 13:09:31] 2025-10-11 17:08:28,002 | INFO     | total number of processed events: 400 (read)
[2025-10-11 13:09:31] 2025-10-11 17:08:28,009 | INFO     | executing command: lscpu
[2025-10-11 13:09:31] 2025-10-11 17:08:28,122 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 13:09:31] 2025-10-11 17:08:29,030 | INFO     | monitor loop #384: job 0:6838119528 is in state 'finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:29,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:09:31] 2025-10-11 17:08:29,827 | INFO     | time since job start (5655s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:31,541 | INFO     | monitor loop #385: job 0:6838119528 is in state 'finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:31,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:09:31] 2025-10-11 17:08:31,834 | INFO     | time since job start (5657s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:33,841 | INFO     | time since job start (5659s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:34,052 | INFO     | monitor loop #386: job 0:6838119528 is in state 'finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:34,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:09:31] 2025-10-11 17:08:35,846 | INFO     | time since job start (5661s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:36,558 | INFO     | monitor loop #387: job 0:6838119528 is in state 'finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:36,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:09:31] 2025-10-11 17:08:37,853 | INFO     | time since job start (5663s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:39,063 | INFO     | monitor loop #388: job 0:6838119528 is in state 'finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:39,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:09:31] 2025-10-11 17:08:39,860 | INFO     | time since job start (5665s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:41,470 | INFO     | PID=144471 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 13:09:31] 2025-10-11 17:08:41,470 | INFO     | .. there are 34 such processes running
[2025-10-11 13:09:31] 2025-10-11 17:08:41,569 | INFO     | monitor loop #389: job 0:6838119528 is in state 'finished'
[2025-10-11 13:09:31] 2025-10-11 17:08:41,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:09:31] 2025-10-11 17:08:42,474 | INFO     | time since job start (5668s) is within the limit (172800.0s)
[2025-10-11 13:09:31] 2025-10-11 17:08:43,926 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 13:09:31] 2025-10-11 17:08:43,931 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9918671875002
[2025-10-11 13:09:31] 2025-10-11 17:08:43,949 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6838119528/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:09:31] 2025-10-11 17:08:43,950 | INFO     | extracted standard info from prmon json
[2025-10-11 13:09:31] 2025-10-11 17:08:43,950 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 13:09:31] 2025-10-11 17:08:43,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 13:09:31] 2025-10-11 17:08:43,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 13:09:31] 2025-10-11 17:08:43,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 13:09:31] 2025-10-11 17:08:43,951 | INFO     | fitting pss+swap vs Time
[2025-10-11 13:09:31] 2025-10-11 17:08:43,952 | INFO     | sum of square deviations: 183757258.8928575
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | sum of deviations: 2921011640.6785707
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | mean x: 1760199836.5357144
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | mean y: 2494854.6071428573
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | -- intersect: -27977701647.122387
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | intersect: -27977701647.122387
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | chi2: 0.28192766343957404
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | -- intersect: -27977701647.122387
[2025-10-11 13:09:31] 2025-10-11 17:08:43,958 | INFO     | current memory leak: 15.90 B/s (using 84 data points, chi2=0.28)
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | could have reported an average CPU frequency of 3793 MHz (7 samples)
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | ..............................
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . Timing measurements:
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . get job = 0 s
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . initial setup = 9 s
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . payload setup = 41 s
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . stage-in = 0 s
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . payload execution = 5526 s
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . stage-out = 1 s
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | . log creation = 0 s
[2025-10-11 13:09:31] 2025-10-11 17:08:43,959 | INFO     | ..............................
[2025-10-11 13:09:31] 2025-10-11 17:08:44,124 | INFO     | 
[2025-10-11 13:09:31] 2025-10-11 17:08:44,124 | INFO     | job summary report
[2025-10-11 13:09:31] 2025-10-11 17:08:44,124 | INFO     | --------------------------------------------------
[2025-10-11 13:09:31] 2025-10-11 17:08:44,124 | INFO     | PanDA job id: 6838119528
[2025-10-11 13:09:31] 2025-10-11 17:08:44,124 | INFO     | task id: 46676269
[2025-10-11 13:09:31] 2025-10-11 17:08:44,124 | INFO     | errors: (none)
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | pilot state: finished 
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | transexitcode: 0
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | exeerrorcode: 0
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | exeerrordiag: 
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | exitcode: 0
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | exitmsg: OK
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | cpuconsumptiontime: 23655 s
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | nevents: 400
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | neventsw: 0
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | pid: 163951
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | pgrp: 163951
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | corecount: 8
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | event service: False
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 34: 2348941, 35: 2349231, 45: 2349387, 5571: 2376033, 5573: 2385031, 5574: 2385087, 5593: 2385281}
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | --------------------------------------------------
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | 
[2025-10-11 13:09:31] 2025-10-11 17:08:44,125 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 13:09:31] 2025-10-11 17:08:44,211 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 13:09:31] 2025-10-11 17:08:44,212 | INFO     | job 6838119528 has completed (purged errors)
[2025-10-11 13:09:31] 2025-10-11 17:08:44,213 | INFO     | overall cleanup function is called
[2025-10-11 13:09:31] 2025-10-11 17:08:45,220 | INFO     | --- collectZombieJob: --- 10, [163951]
[2025-10-11 13:09:31] 2025-10-11 17:08:45,220 | INFO     | zombie collector waiting for pid 163951
[2025-10-11 13:09:31] 2025-10-11 17:08:45,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 13:09:31] 2025-10-11 17:08:45,220 | INFO     | collected zombie processes
[2025-10-11 13:09:31] 2025-10-11 17:08:45,220 | INFO     | will attempt to kill all subprocesses of pid=163951
[2025-10-11 13:09:31] 2025-10-11 17:08:45,694 | INFO     | process IDs to be killed: [163951] (in reverse order)
[2025-10-11 13:09:31] 2025-10-11 17:08:45,830 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 13:09:31] 2025-10-11 17:08:45,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 13:09:31] 2025-10-11 17:08:45,855 | INFO     | did not find any defunct processes belonging to 163951
[2025-10-11 13:09:31] 2025-10-11 17:08:45,873 | INFO     | did not find any defunct processes belonging to 163951
[2025-10-11 13:09:31] 2025-10-11 17:08:45,874 | INFO     | ready for new job
[2025-10-11 13:09:31] 2025-10-11 17:08:45,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 13:09:31] 2025-10-11 17:08:45,875 | INFO     | ***************************************
[2025-10-11 13:09:31] 2025-10-11 17:08:45,875 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 13:09:31] 2025-10-11 17:08:45,875 | INFO     | ***************************************
[2025-10-11 13:09:31] 2025-10-11 17:08:45,875 | INFO     | 
[2025-10-11 13:09:31] 2025-10-11 17:08:45,880 | INFO     | architecture information:
[2025-10-11 13:09:31] 2025-10-11 17:08:45,880 | INFO     | executing command: cat /etc/os-release
[2025-10-11 13:09:31] 2025-10-11 17:08:45,898 | INFO     | cat /etc/os-release:
[2025-10-11 13:09:31] NAME="CentOS Linux"
[2025-10-11 13:09:31] VERSION="7 (Core)"
[2025-10-11 13:09:31] ID="centos"
[2025-10-11 13:09:31] ID_LIKE="rhel fedora"
[2025-10-11 13:09:31] VERSION_ID="7"
[2025-10-11 13:09:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 13:09:31] ANSI_COLOR="0;31"
[2025-10-11 13:09:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 13:09:31] HOME_URL="https://www.centos.org/"
[2025-10-11 13:09:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 13:09:31] 
[2025-10-11 13:09:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 13:09:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 13:09:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 13:09:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 13:09:31] 
[2025-10-11 13:09:31] 2025-10-11 17:08:45,898 | INFO     | ***************************************
[2025-10-11 13:09:31] 2025-10-11 17:08:46,401 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 13:09:31] 2025-10-11 17:08:46,430 | INFO     | sufficient remaining disk space (170517331968 B)
[2025-10-11 13:09:31] 2025-10-11 17:08:46,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 13:09:31] 2025-10-11 17:08:46,431 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 13:09:31] 2025-10-11 17:08:46,431 | INFO     | update_server=False
[2025-10-11 13:09:31] 2025-10-11 17:08:46,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 13:09:31] 2025-10-11 17:08:46,590 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 13:09:31] 2025-10-11 17:08:46,590 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 13:09:31] 2025-10-11 17:08:46,591 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:09:31] 2025-10-11 17:08:46,591 | INFO     | will abort loop
[2025-10-11 13:09:31] 2025-10-11 17:08:46,734 | INFO     | all job control threads have been joined
[2025-10-11 13:09:31] 2025-10-11 17:08:46,887 | INFO     | all data control threads have been joined
[2025-10-11 13:09:31] 2025-10-11 17:08:47,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 13:09:31] 2025-10-11 17:08:47,435 | INFO     | [job] retrieve thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,438 | INFO     | [payload] validate_post thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,596 | INFO     | [job] job monitor thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,663 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,734 | INFO     | [job] validate thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,735 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,740 | INFO     | [job] control thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,755 | INFO     | [payload] failed_post thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,893 | INFO     | [data] control thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:47,903 | INFO     | all payload control threads have been joined
[2025-10-11 13:09:31] 2025-10-11 17:08:48,445 | INFO     | [data] copytool_in thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:48,603 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:48,909 | INFO     | [payload] control thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:49,097 | INFO     | [data] copytool_out thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:49,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:09:31] 2025-10-11 17:08:49,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 13:09:31] 2025-10-11 17:08:50,145 | INFO     | [job] queue monitor thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:08:53,217 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 13:09:31] 2025-10-11 17:09:16,075 | INFO     | PID=144471 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 13:09:31] 2025-10-11 17:09:16,076 | INFO     | .. there are 34 such processes running
[2025-10-11 13:09:31] 2025-10-11 17:09:16,076 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 13:09:31] 2025-10-11 17:09:16,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 13:09:31] 2025-10-11 17:09:16,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 13:09:31] 2025-10-11 17:09:23,621 | INFO     | [monitor] cgroup control has ended
[2025-10-11 13:09:31] 2025-10-11 17:09:25,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139909133264704)>', '<ExcThread(monitor, started 139908559664896)>']
[2025-10-11 13:09:31] 2025-10-11 17:09:26,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 13:09:31] 2025-10-11 17:09:26,151 | INFO     | [monitor] control thread has ended
[2025-10-11 13:09:31] 2025-10-11 17:09:30,622 | INFO     | all workflow threads have been joined
[2025-10-11 13:09:31] 2025-10-11 17:09:30,623 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 13:09:31] 2025-10-11 17:09:30,623 | INFO     | traces error code: 0
[2025-10-11 13:09:31] 2025-10-11 17:09:30,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 13:09:31] 2025-10-11 17:09:30,730 [wrapper] ==== pilot stdout END ====
[2025-10-11 13:09:31] 2025-10-11 17:09:30,733 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 13:09:31] 2025-10-11 17:09:30,735 [wrapper] pilotpid: 144471
[2025-10-11 13:09:31] 2025-10-11 17:09:30,737 [wrapper] Pilot exit status: 0
[2025-10-11 13:09:31] 2025-10-11 17:09:30,766 [wrapper] pandaids: 6838119528
[2025-10-11 13:09:31] 2025-10-11 17:09:30,890 [wrapper] cleanup supervisor_pilot  543174 144472
[2025-10-11 13:09:31] 2025-10-11 17:09:30,896 [wrapper] Test setup, not cleaning
[2025-10-11 13:09:31] 2025-10-11 17:09:30,898 [wrapper] apfmon messages muted
[2025-10-11 13:09:31] 2025-10-11 17:09:30,900 [wrapper] ==== wrapper stdout END ====
[2025-10-11 13:09:31] 2025-10-11 17:09:30,902 [wrapper] ==== wrapper stderr END ====
[2025-10-11 13:09:31]  *** Error codes and diagnostics ***
[2025-10-11 13:09:31]     "exeErrorCode": 0,
[2025-10-11 13:09:31]     "exeErrorDiag": "",
[2025-10-11 13:09:31]     "pilotErrorCode": 0,
[2025-10-11 13:09:31]     "pilotErrorDiag": "",
[2025-10-11 13:09:31]  *** Listing of results directory ***
[2025-10-11 13:09:31] total 409732
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 02:35 pilot3.tar.gz
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 02:40 queuedata.json
[2025-10-11 13:09:31] -rwx------. 1 boincer umatlas     36292 Oct 11 02:40 runpilot2-wrapper.sh
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas       100 Oct 11 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 13:09:31] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 11:32 run_atlas
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas       105 Oct 11 11:32 job.xml
[2025-10-11 13:09:31] -rw-r--r--. 2 boincer umatlas 223096344 Oct 11 11:32 EVNT.46676267._002125.pool.root.1
[2025-10-11 13:09:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 11:32 start_atlas.sh
[2025-10-11 13:09:31] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 11:32 shared
[2025-10-11 13:09:31] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 11:32 input.tar.gz
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas         0 Oct 11 11:32 boinc_lockfile
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 11:32 pandaJob.out
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas    975512 Oct 11 11:34 agis_schedconf.cvmfs.json
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas   1560580 Oct 11 11:34 agis_ddmendpoints.agis.ALL.json
[2025-10-11 13:09:31] drwx------. 5 boincer umatlas      4096 Oct 11 11:34 pilot3
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas      7174 Oct 11 13:04 init_data.xml
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas 190354658 Oct 11 13:07 HITS.46676269._052878.pool.root.1
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas       529 Oct 11 13:07 boinc_task_state.xml
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas      1049 Oct 11 13:08 memory_monitor_summary.json
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas    337508 Oct 11 13:08 log.46676269._052878.job.log.tgz.1
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas        95 Oct 11 13:08 pilot_heartbeat.json
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas      7813 Oct 11 13:08 heartbeat.json
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 13:09 boinc_mmap_file
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas        27 Oct 11 13:09 wrapper_checkpoint.txt
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas      5010 Oct 11 13:09 pilotlog.txt
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas    765579 Oct 11 13:09 log.46676269._052878.job.log.1
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas       357 Oct 11 13:09 output.list
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas       620 Oct 11 13:09 runtime_log
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas   1126400 Oct 11 13:09 result.tar.gz
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas      8703 Oct 11 13:09 runtime_log.err
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas       657 Oct 11 13:09 5e1NDmwSiR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbPRMDm54exLn.diag
[2025-10-11 13:09:31] -rw-r--r--. 1 boincer umatlas     22300 Oct 11 13:09 stderr.txt
[2025-10-11 13:09:31] HITS file was successfully produced:
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas 190354658 Oct 11 13:07 shared/HITS.pool.root.1
[2025-10-11 13:09:31]  *** Contents of shared directory: ***
[2025-10-11 13:09:31] total 405448
[2025-10-11 13:09:31] -rw-r--r--. 2 boincer umatlas 223096344 Oct 11 11:32 ATLAS.root_0
[2025-10-11 13:09:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 11:32 start_atlas.sh
[2025-10-11 13:09:31] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 11:32 input.tar.gz
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas 190354658 Oct 11 13:07 HITS.pool.root.1
[2025-10-11 13:09:31] -rw-------. 1 boincer umatlas   1126400 Oct 11 13:09 result.tar.gz
13:09:32 (140154): run_atlas exited; CPU time 23819.266828
13:09:32 (140154): called boinc_finish(0)

</stderr_txt>
]]>

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