Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:13:40 (26162): wrapper (7.7.26015): starting
11:13:40 (26162): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 11:13:40] Arguments: --nthreads 12
[2025-10-11 11:13:40] Threads: 12
[2025-10-11 11:13:40] Checking for CVMFS
[2025-10-11 11:13:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 11:13:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 11:13:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 11:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 11:13:40] 2.11.2.0 2987 221561 99416 151587 2 59 13195162 20275200 1 130560 1 107144287 99.984 13349238 12202 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 11:13:40] CVMFS is ok
[2025-10-11 11:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 11:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 11:13:40] Further information can be found at the LHC@home message board.
[2025-10-11 11:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 11:13:40] Checking for apptainer binary...
[2025-10-11 11:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 11:13:40] Running /usr/bin/apptainer --version
[2025-10-11 11:13:40] apptainer version 1.3.2-1.el7
[2025-10-11 11:13:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 11:13:42] c-205-19.aglt2.org
[2025-10-11 11:13:42] apptainer works
[2025-10-11 11:13:42] Set ATHENA_PROC_NUMBER=12
[2025-10-11 11:13:42] Set ATHENA_CORE_NUMBER=12
[2025-10-11 11:13:42] Starting ATLAS job with PandaID=6838294976
[2025-10-11 11:13:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 12:27:20]  *** The last 200 lines of the pilot log: ***
[2025-10-11 12:27:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838294976/log.46676269._055770.job.log.tgz.1
[2025-10-11 12:27:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/83/log.46676269._055770.job.log.tgz.1
[2025-10-11 12:27:20]  workdir=None
[2025-10-11 12:27:20] ]
[2025-10-11 12:27:20] 2025-10-11 16:26:38,870 | INFO     | transferring file log.46676269._055770.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838294976/log.46676269._055770.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 12:27:20] 2025-10-11 16:26:38,870 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838294976/log.46676269._055770.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._055770.job
[2025-10-11 12:27:20] 2025-10-11 16:26:38,892 | INFO     | adding to output.list: log.46676269._055770.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/83/log.46676269._055770.job.log.tg
[2025-10-11 12:27:20] 2025-10-11 16:26:38,893 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 12:27:20] 2025-10-11 16:26:38,893 | INFO     | summary of transferred files:
[2025-10-11 12:27:20] 2025-10-11 16:26:38,893 | INFO     |  -- lfn=log.46676269._055770.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 12:27:20] 2025-10-11 16:26:38,894 | INFO     | stage-out finished correctly
[2025-10-11 12:27:20] 2025-10-11 16:26:39,231 | INFO     | time since job start (4362s) is within the limit (172800.0s)
[2025-10-11 12:27:20] 2025-10-11 16:26:40,499 | INFO     | monitor loop #325: job 0:6838294976 is in state 'finished'
[2025-10-11 12:27:20] 2025-10-11 16:26:40,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 12:27:20] 2025-10-11 16:26:40,902 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 12:27:20] 2025-10-11 16:26:41,237 | INFO     | time since job start (4364s) is within the limit (172800.0s)
[2025-10-11 12:27:20] 2025-10-11 16:26:43,002 | INFO     | monitor loop #326: job 0:6838294976 is in state 'finished'
[2025-10-11 12:27:20] 2025-10-11 16:26:43,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 12:27:20] 2025-10-11 16:26:43,242 | INFO     | time since job start (4366s) is within the limit (172800.0s)
[2025-10-11 12:27:20] 2025-10-11 16:26:43,545 | INFO     | job 6838294976 has state=finished
[2025-10-11 12:27:20] 2025-10-11 16:26:43,552 | INFO     | preparing for final server update for job 6838294976 in state='finished'
[2025-10-11 12:27:20] 2025-10-11 16:26:43,552 | INFO     | this job has now completed (state=finished)
[2025-10-11 12:27:20] 2025-10-11 16:26:43,553 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 12:27:20] 2025-10-11 16:26:43,553 | INFO     | log transfer has been attempted: DONE
[2025-10-11 12:27:20] 2025-10-11 16:26:43,553 | INFO     | job 6838294976 has finished - writing final server update
[2025-10-11 12:27:20] 2025-10-11 16:26:43,553 | INFO     | total number of processed events: 400 (read)
[2025-10-11 12:27:20] 2025-10-11 16:26:43,554 | INFO     | executing command: lscpu
[2025-10-11 12:27:20] 2025-10-11 16:26:43,581 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 12:27:20] 2025-10-11 16:26:45,248 | INFO     | time since job start (4368s) is within the limit (172800.0s)
[2025-10-11 12:27:20] 2025-10-11 16:26:45,505 | INFO     | monitor loop #327: job 0:6838294976 is in state 'finished'
[2025-10-11 12:27:20] 2025-10-11 16:26:45,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 12:27:20] 2025-10-11 16:26:47,254 | INFO     | time since job start (4370s) is within the limit (172800.0s)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,008 | INFO     | monitor loop #328: job 0:6838294976 is in state 'finished'
[2025-10-11 12:27:20] 2025-10-11 16:26:48,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,377 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 12:27:20] 2025-10-11 16:26:48,381 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-11 12:27:20] 2025-10-11 16:26:48,384 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838294976/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,385 | INFO     | extracted standard info from prmon json
[2025-10-11 12:27:20] 2025-10-11 16:26:48,385 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 12:27:20] 2025-10-11 16:26:48,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 12:27:20] 2025-10-11 16:26:48,385 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:27:20] 2025-10-11 16:26:48,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:27:20] 2025-10-11 16:26:48,387 | INFO     | fitting pss+swap vs Time
[2025-10-11 12:27:20] 2025-10-11 16:26:48,388 | INFO     | sum of square deviations: 81266640.0
[2025-10-11 12:27:20] 2025-10-11 16:26:48,388 | INFO     | sum of deviations: 936080502.0
[2025-10-11 12:27:20] 2025-10-11 16:26:48,388 | INFO     | mean x: 1760197892.5
[2025-10-11 12:27:20] 2025-10-11 16:26:48,388 | INFO     | mean y: 2734097.5625
[2025-10-11 12:27:20] 2025-10-11 16:26:48,388 | INFO     | -- intersect: -20272337282.658733
[2025-10-11 12:27:20] 2025-10-11 16:26:48,388 | INFO     | intersect: -20272337282.658733
[2025-10-11 12:27:20] 2025-10-11 16:26:48,389 | INFO     | chi2: 0.016552965653178035
[2025-10-11 12:27:20] 2025-10-11 16:26:48,389 | INFO     | -- intersect: -20272337282.658733
[2025-10-11 12:27:20] 2025-10-11 16:26:48,389 | INFO     | current memory leak: 11.52 B/s (using 64 data points, chi2=0.02)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,389 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,389 | INFO     | ..............................
[2025-10-11 12:27:20] 2025-10-11 16:26:48,389 | INFO     | . Timing measurements:
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | . get job = 0 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | . initial setup = 3 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | . payload setup = 7 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | . stage-in = 0 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | . payload execution = 4334 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | . stage-out = 0 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | . log creation = 0 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,390 | INFO     | ..............................
[2025-10-11 12:27:20] 2025-10-11 16:26:48,656 | INFO     | 
[2025-10-11 12:27:20] 2025-10-11 16:26:48,656 | INFO     | job summary report
[2025-10-11 12:27:20] 2025-10-11 16:26:48,671 | INFO     | --------------------------------------------------
[2025-10-11 12:27:20] 2025-10-11 16:26:48,671 | INFO     | PanDA job id: 6838294976
[2025-10-11 12:27:20] 2025-10-11 16:26:48,671 | INFO     | task id: 46676269
[2025-10-11 12:27:20] 2025-10-11 16:26:48,672 | INFO     | errors: (none)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,672 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 12:27:20] 2025-10-11 16:26:48,672 | INFO     | pilot state: finished 
[2025-10-11 12:27:20] 2025-10-11 16:26:48,672 | INFO     | transexitcode: 0
[2025-10-11 12:27:20] 2025-10-11 16:26:48,672 | INFO     | exeerrorcode: 0
[2025-10-11 12:27:20] 2025-10-11 16:26:48,672 | INFO     | exeerrordiag: 
[2025-10-11 12:27:20] 2025-10-11 16:26:48,673 | INFO     | exitcode: 0
[2025-10-11 12:27:20] 2025-10-11 16:26:48,673 | INFO     | exitmsg: OK
[2025-10-11 12:27:20] 2025-10-11 16:26:48,673 | INFO     | cpuconsumptiontime: 47312 s
[2025-10-11 12:27:20] 2025-10-11 16:26:48,673 | INFO     | nevents: 400
[2025-10-11 12:27:20] 2025-10-11 16:26:48,673 | INFO     | neventsw: 0
[2025-10-11 12:27:20] 2025-10-11 16:26:48,673 | INFO     | pid: 4273
[2025-10-11 12:27:20] 2025-10-11 16:26:48,674 | INFO     | pgrp: 4273
[2025-10-11 12:27:20] 2025-10-11 16:26:48,674 | INFO     | corecount: 12
[2025-10-11 12:27:20] 2025-10-11 16:26:48,674 | INFO     | event service: False
[2025-10-11 12:27:20] 2025-10-11 16:26:48,674 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4344: 2375223, 4345: 2384221, 4347: 2384277, 4355: 2384599}
[2025-10-11 12:27:20] 2025-10-11 16:26:48,674 | INFO     | --------------------------------------------------
[2025-10-11 12:27:20] 2025-10-11 16:26:48,674 | INFO     | 
[2025-10-11 12:27:20] 2025-10-11 16:26:48,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 12:27:20] 2025-10-11 16:26:48,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,698 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,698 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,698 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,698 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,699 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,699 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,699 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,699 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,700 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,700 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,700 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,700 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,700 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,701 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 12:27:20] 2025-10-11 16:26:48,701 | INFO     | job 6838294976 has completed (purged errors)
[2025-10-11 12:27:20] 2025-10-11 16:26:48,701 | INFO     | overall cleanup function is called
[2025-10-11 12:27:20] 2025-10-11 16:26:49,708 | INFO     | --- collectZombieJob: --- 10, [4273]
[2025-10-11 12:27:20] 2025-10-11 16:26:49,708 | INFO     | zombie collector waiting for pid 4273
[2025-10-11 12:27:20] 2025-10-11 16:26:49,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 12:27:20] 2025-10-11 16:26:49,708 | INFO     | collected zombie processes
[2025-10-11 12:27:20] 2025-10-11 16:26:49,708 | INFO     | will attempt to kill all subprocesses of pid=4273
[2025-10-11 12:27:20] 2025-10-11 16:26:49,802 | INFO     | process IDs to be killed: [4273] (in reverse order)
[2025-10-11 12:27:20] 2025-10-11 16:26:49,852 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 12:27:20] 2025-10-11 16:26:49,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 12:27:20] 2025-10-11 16:26:49,856 | INFO     | did not find any defunct processes belonging to 4273
[2025-10-11 12:27:20] 2025-10-11 16:26:49,858 | INFO     | did not find any defunct processes belonging to 4273
[2025-10-11 12:27:20] 2025-10-11 16:26:49,858 | INFO     | ready for new job
[2025-10-11 12:27:20] 2025-10-11 16:26:49,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 12:27:20] 2025-10-11 16:26:49,860 | INFO     | ***************************************
[2025-10-11 12:27:20] 2025-10-11 16:26:49,860 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 12:27:20] 2025-10-11 16:26:49,860 | INFO     | ***************************************
[2025-10-11 12:27:20] 2025-10-11 16:26:49,860 | INFO     | 
[2025-10-11 12:27:20] 2025-10-11 16:26:49,860 | INFO     | architecture information:
[2025-10-11 12:27:20] 2025-10-11 16:26:49,861 | INFO     | executing command: cat /etc/os-release
[2025-10-11 12:27:20] 2025-10-11 16:26:49,874 | INFO     | cat /etc/os-release:
[2025-10-11 12:27:20] NAME="CentOS Linux"
[2025-10-11 12:27:20] VERSION="7 (Core)"
[2025-10-11 12:27:20] ID="centos"
[2025-10-11 12:27:20] ID_LIKE="rhel fedora"
[2025-10-11 12:27:20] VERSION_ID="7"
[2025-10-11 12:27:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 12:27:20] ANSI_COLOR="0;31"
[2025-10-11 12:27:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 12:27:20] HOME_URL="https://www.centos.org/"
[2025-10-11 12:27:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 12:27:20] 
[2025-10-11 12:27:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 12:27:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 12:27:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 12:27:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 12:27:20] 
[2025-10-11 12:27:20] 2025-10-11 16:26:49,875 | INFO     | ***************************************
[2025-10-11 12:27:20] 2025-10-11 16:26:50,378 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 12:27:20] 2025-10-11 16:26:50,393 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-11 12:27:20] 2025-10-11 16:26:50,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 12:27:20] 2025-10-11 16:26:50,394 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 12:27:20] 2025-10-11 16:26:50,394 | INFO     | update_server=False
[2025-10-11 12:27:20] 2025-10-11 16:26:50,394 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 12:27:20] 2025-10-11 16:26:50,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:27:20] 2025-10-11 16:26:50,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 12:27:20] 2025-10-11 16:26:50,511 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 12:27:20] 2025-10-11 16:26:50,511 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 12:27:20] 2025-10-11 16:26:50,512 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:27:20] 2025-10-11 16:26:50,512 | INFO     | will abort loop
[2025-10-11 12:27:20] 2025-10-11 16:26:50,723 | INFO     | all payload control threads have been joined
[2025-10-11 12:27:20] 2025-10-11 16:26:51,097 | INFO     | all data control threads have been joined
[2025-10-11 12:27:20] 2025-10-11 16:26:51,400 | INFO     | [job] retrieve thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,400 | INFO     | [job] queue monitor thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,426 | INFO     | all job control threads have been joined
[2025-10-11 12:27:20] 2025-10-11 16:26:51,470 | INFO     | [job] validate thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,471 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 12:27:20] 2025-10-11 16:26:51,517 | INFO     | [job] job monitor thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,729 | INFO     | [payload] control thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,905 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,966 | INFO     | [payload] validate_post thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:51,990 | INFO     | [payload] failed_post thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:52,102 | INFO     | [data] control thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:52,151 | INFO     | [data] copytool_in thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:52,401 | INFO     | [data] copytool_out thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:52,432 | INFO     | [job] control thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:52,586 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:26:55,497 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:27:01,212 | INFO     | job.realtimelogging is not enabled
[2025-10-11 12:27:20] 2025-10-11 16:27:02,218 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 12:27:20] 2025-10-11 16:27:03,848 | INFO     | [monitor] cgroup control has ended
[2025-10-11 12:27:20] 2025-10-11 16:27:04,688 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885576574784)>', '<ExcThread(monitor, started 139884954097408)>']
[2025-10-11 12:27:20] 2025-10-11 16:27:09,714 | INFO     | all workflow threads have been joined
[2025-10-11 12:27:20] 2025-10-11 16:27:09,714 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 12:27:20] 2025-10-11 16:27:09,714 | INFO     | traces error code: 0
[2025-10-11 12:27:20] 2025-10-11 16:27:09,715 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 12:27:20] 2025-10-11 16:27:20,459 | INFO     | PID=30155 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 12:27:20] 2025-10-11 16:27:20,459 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 12:27:20] 2025-10-11 16:27:20,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 12:27:20] 2025-10-11 16:27:20,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 12:27:20] 2025-10-11 16:27:20,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 12:27:20] 2025-10-11 16:27:20,460 | INFO     | [monitor] control thread has ended
[2025-10-11 12:27:20] 2025-10-11 16:27:20,538 [wrapper] ==== pilot stdout END ====
[2025-10-11 12:27:20] 2025-10-11 16:27:20,542 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 12:27:20] 2025-10-11 16:27:20,546 [wrapper] pilotpid: 30155
[2025-10-11 12:27:20] 2025-10-11 16:27:20,549 [wrapper] Pilot exit status: 0
[2025-10-11 12:27:20] 2025-10-11 16:27:20,564 [wrapper] pandaids: 6838294976
[2025-10-11 12:27:20] 2025-10-11 16:27:20,605 [wrapper] cleanup supervisor_pilot 21621 30156
[2025-10-11 12:27:20] 2025-10-11 16:27:20,609 [wrapper] Test setup, not cleaning
[2025-10-11 12:27:20] 2025-10-11 16:27:20,613 [wrapper] apfmon messages muted
[2025-10-11 12:27:20] 2025-10-11 16:27:20,616 [wrapper] ==== wrapper stdout END ====
[2025-10-11 12:27:20] 2025-10-11 16:27:20,620 [wrapper] ==== wrapper stderr END ====
[2025-10-11 12:27:20]  *** Error codes and diagnostics ***
[2025-10-11 12:27:20]     "exeErrorCode": 0,
[2025-10-11 12:27:20]     "exeErrorDiag": "",
[2025-10-11 12:27:20]     "pilotErrorCode": 0,
[2025-10-11 12:27:20]     "pilotErrorDiag": "",
[2025-10-11 12:27:20]  *** Listing of results directory ***
[2025-10-11 12:27:20] total 412968
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 06:07 pilot3.tar.gz
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 06:10 queuedata.json
[2025-10-11 12:27:20] -rwx------ 1 boincer umatlas     36292 Oct 11 06:12 runpilot2-wrapper.sh
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas       100 Oct 11 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 12:27:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 11:13 run_atlas
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas       105 Oct 11 11:13 job.xml
[2025-10-11 12:27:20] -rw-r--r-- 2 boincer umatlas 223232836 Oct 11 11:13 EVNT.46676267._002238.pool.root.1
[2025-10-11 12:27:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 11:13 start_atlas.sh
[2025-10-11 12:27:20] drwxrwx--x 2 boincer umatlas      4096 Oct 11 11:13 shared
[2025-10-11 12:27:20] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 11:13 input.tar.gz
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas         0 Oct 11 11:13 boinc_lockfile
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 11:13 pandaJob.out
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas    975536 Oct 11 11:13 agis_schedconf.cvmfs.json
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas   1560580 Oct 11 11:13 agis_ddmendpoints.agis.ALL.json
[2025-10-11 12:27:20] drwx------ 5 boincer umatlas      4096 Oct 11 11:13 pilot3
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas      5952 Oct 11 12:18 init_data.xml
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas 193702658 Oct 11 12:26 HITS.46676269._055770.pool.root.1
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas       529 Oct 11 12:26 boinc_task_state.xml
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas      1050 Oct 11 12:26 memory_monitor_summary.json
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas    387056 Oct 11 12:26 log.46676269._055770.job.log.tgz.1
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas      7854 Oct 11 12:26 heartbeat.json
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 12:26 boinc_mmap_file
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas        27 Oct 11 12:26 wrapper_checkpoint.txt
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas        95 Oct 11 12:27 pilot_heartbeat.json
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas       745 Oct 11 12:27 pilotlog.txt
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas    635542 Oct 11 12:27 log.46676269._055770.job.log.1
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas       357 Oct 11 12:27 output.list
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas       620 Oct 11 12:27 runtime_log
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas   1044480 Oct 11 12:27 result.tar.gz
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas       659 Oct 11 12:27 XjlNDm9klR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTAgNDmI5wukm.diag
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 12:27 runtime_log.err
[2025-10-11 12:27:20] -rw-r--r-- 1 boincer umatlas     22222 Oct 11 12:27 stderr.txt
[2025-10-11 12:27:20] HITS file was successfully produced:
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas 193702658 Oct 11 12:26 shared/HITS.pool.root.1
[2025-10-11 12:27:20]  *** Contents of shared directory: ***
[2025-10-11 12:27:20] total 408764
[2025-10-11 12:27:20] -rw-r--r-- 2 boincer umatlas 223232836 Oct 11 11:13 ATLAS.root_0
[2025-10-11 12:27:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 11:13 start_atlas.sh
[2025-10-11 12:27:20] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 11:13 input.tar.gz
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas 193702658 Oct 11 12:26 HITS.pool.root.1
[2025-10-11 12:27:20] -rw------- 1 boincer umatlas   1044480 Oct 11 12:27 result.tar.gz
12:27:21 (26162): run_atlas exited; CPU time 47293.553530
12:27:21 (26162): called boinc_finish(0)

</stderr_txt>
]]>

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