Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:59:57 (3546292): wrapper (7.7.26015): starting
10:59:57 (3546292): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 10:59:58] Arguments: --nthreads 8
[2025-10-11 10:59:58] Threads: 8
[2025-10-11 10:59:58] Checking for CVMFS
[2025-10-11 10:59:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 11:00:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 11:00:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 11:00:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 11:00:01] 2.13.2.0 10966 61739 388316 151587 1 372 30264853 32935937 31844 16776704 4 108680467 99.522 134137962 8597 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 11:00:01] CVMFS is ok
[2025-10-11 11:00:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 11:00:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 11:00:01] Further information can be found at the LHC@home message board.
[2025-10-11 11:00:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 11:00:01] Checking for apptainer binary...
[2025-10-11 11:00:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 11:00:01] Running /usr/bin/apptainer --version
[2025-10-11 11:00:02] apptainer version 1.4.3-1.el9
[2025-10-11 11:00:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 11:00:03] c6-12-25-3.aglt2.org
[2025-10-11 11:00:03] apptainer works
[2025-10-11 11:00:03] Set ATHENA_PROC_NUMBER=8
[2025-10-11 11:00:03] Set ATHENA_CORE_NUMBER=8
[2025-10-11 11:00:03] Starting ATLAS job with PandaID=6838451348
[2025-10-11 11:00:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:04:02]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:04:02] 2025-10-12 04:02:16,400 | INFO     | -- intersect: -8363186593.811203
[2025-10-12 00:04:02] 2025-10-12 04:02:16,400 | INFO     | intersect: -8363186593.811203
[2025-10-12 00:04:02] 2025-10-12 04:02:16,426 | INFO     | chi2: 9.078496807469572
[2025-10-12 00:04:02] 2025-10-12 04:02:16,427 | INFO     | current chi2=9.078496807469572 (change=28.74782887849961 %)
[2025-10-12 00:04:02] 2025-10-12 04:02:16,452 | INFO     | sum of square deviations: 131858790539.38173
[2025-10-12 00:04:02] 2025-10-12 04:02:16,631 | INFO     | sum of deviations: 493381647358.5272
[2025-10-12 00:04:02] 2025-10-12 04:02:16,650 | INFO     | mean x: 1760218691.7885637
[2025-10-12 00:04:02] 2025-10-12 04:02:16,650 | INFO     | mean y: 2092097.1542553192
[2025-10-12 00:04:02] 2025-10-12 04:02:16,650 | INFO     | -- intersect: -6584193081.963431
[2025-10-12 00:04:02] 2025-10-12 04:02:16,651 | INFO     | intersect: -6584193081.963431
[2025-10-12 00:04:02] 2025-10-12 04:02:16,668 | INFO     | chi2: 7.307304329976655
[2025-10-12 00:04:02] 2025-10-12 04:02:16,668 | INFO     | current chi2=7.307304329976655 (change=19.509754919290398 %)
[2025-10-12 00:04:02] 2025-10-12 04:02:16,669 | INFO     | left removable region: 20
[2025-10-12 00:04:02] 2025-10-12 04:02:16,684 | INFO     | sum of square deviations: 121117719279.38962
[2025-10-12 00:04:02] 2025-10-12 04:02:16,842 | INFO     | sum of deviations: 534848951053.4116
[2025-10-12 00:04:02] 2025-10-12 04:02:16,842 | INFO     | mean x: 1760218661.2995896
[2025-10-12 00:04:02] 2025-10-12 04:02:16,843 | INFO     | mean y: 2116954.705882353
[2025-10-12 00:04:02] 2025-10-12 04:02:16,843 | INFO     | -- intersect: -7770908414.513822
[2025-10-12 00:04:02] 2025-10-12 04:02:16,843 | INFO     | intersect: -7770908414.513822
[2025-10-12 00:04:02] 2025-10-12 04:02:16,864 | INFO     | chi2: 1.735764188404519
[2025-10-12 00:04:02] 2025-10-12 04:02:16,865 | INFO     | -- intersect: -7770908414.513822
[2025-10-12 00:04:02] 2025-10-12 04:02:16,865 | INFO     | current memory leak: 4.42 B/s (using 731 data points, chi2=1.74)
[2025-10-12 00:04:02] 2025-10-12 04:02:16,885 | INFO     | could have reported an average CPU frequency of 999 MHz (28 samples)
[2025-10-12 00:04:02] 2025-10-12 04:02:16,886 | INFO     | ..............................
[2025-10-12 00:04:02] 2025-10-12 04:02:16,886 | INFO     | . Timing measurements:
[2025-10-12 00:04:02] 2025-10-12 04:02:16,886 | INFO     | . get job = 1 s
[2025-10-12 00:04:02] 2025-10-12 04:02:16,887 | INFO     | . initial setup = 10 s
[2025-10-12 00:04:02] 2025-10-12 04:02:16,887 | INFO     | . payload setup = 81 s
[2025-10-12 00:04:02] 2025-10-12 04:02:16,887 | INFO     | . stage-in = 0 s
[2025-10-12 00:04:02] 2025-10-12 04:02:16,887 | INFO     | . payload execution = 46500 s
[2025-10-12 00:04:02] 2025-10-12 04:02:16,887 | INFO     | . stage-out = 31 s
[2025-10-12 00:04:02] 2025-10-12 04:02:16,888 | INFO     | . log creation = 3 s
[2025-10-12 00:04:02] 2025-10-12 04:02:16,888 | INFO     | ..............................
[2025-10-12 00:04:02] 2025-10-12 04:02:17,782 | INFO     | time since job start (46808s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:18,868 | INFO     | 
[2025-10-12 00:04:02] 2025-10-12 04:02:18,869 | INFO     | job summary report
[2025-10-12 00:04:02] 2025-10-12 04:02:18,869 | INFO     | --------------------------------------------------
[2025-10-12 00:04:02] 2025-10-12 04:02:18,869 | INFO     | PanDA job id: 6838451348
[2025-10-12 00:04:02] 2025-10-12 04:02:18,869 | INFO     | task id: 46676269
[2025-10-12 00:04:02] 2025-10-12 04:02:18,869 | INFO     | errors: (none)
[2025-10-12 00:04:02] 2025-10-12 04:02:18,870 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:04:02] 2025-10-12 04:02:18,870 | INFO     | pilot state: finished 
[2025-10-12 00:04:02] 2025-10-12 04:02:18,870 | INFO     | transexitcode: 0
[2025-10-12 00:04:02] 2025-10-12 04:02:18,870 | INFO     | exeerrorcode: 0
[2025-10-12 00:04:02] 2025-10-12 04:02:18,870 | INFO     | exeerrordiag: 
[2025-10-12 00:04:02] 2025-10-12 04:02:18,871 | INFO     | exitcode: 0
[2025-10-12 00:04:02] 2025-10-12 04:02:18,871 | INFO     | exitmsg: OK
[2025-10-12 00:04:02] 2025-10-12 04:02:18,871 | INFO     | cpuconsumptiontime: 121644 s
[2025-10-12 00:04:02] 2025-10-12 04:02:18,871 | INFO     | nevents: 400
[2025-10-12 00:04:02] 2025-10-12 04:02:18,871 | INFO     | neventsw: 0
[2025-10-12 00:04:02] 2025-10-12 04:02:18,872 | INFO     | pid: 3563653
[2025-10-12 00:04:02] 2025-10-12 04:02:18,872 | INFO     | pgrp: 3563653
[2025-10-12 00:04:02] 2025-10-12 04:02:19,038 | INFO     | corecount: 8
[2025-10-12 00:04:02] 2025-10-12 04:02:19,038 | INFO     | event service: False
[2025-10-12 00:04:02] 2025-10-12 04:02:19,038 | INFO     | sizes: {0: 2348029, 2: 2348630, 4: 2348714, 8: 2348827, 9: 2348969, 10: 2348969, 25: 2349125, 36: 2349153, 49: 2349181, 59: 2349471, 61: 2349499, 46592: 2392266, 4
[2025-10-12 00:04:02] 2025-10-12 04:02:19,038 | INFO     | --------------------------------------------------
[2025-10-12 00:04:02] 2025-10-12 04:02:19,039 | INFO     | 
[2025-10-12 00:04:02] 2025-10-12 04:02:19,039 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 00:04:02] 2025-10-12 04:02:19,790 | INFO     | time since job start (46810s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:21,797 | INFO     | time since job start (46812s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:23,805 | INFO     | time since job start (46814s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:25,813 | INFO     | time since job start (46816s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:33,757 | INFO     | PID=3552702 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 00:04:02] 2025-10-12 04:02:33,776 | INFO     | .. there are 31 such processes running
[2025-10-12 00:04:02] 2025-10-12 04:02:34,779 | INFO     | time since job start (46825s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:36,799 | INFO     | time since job start (46827s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:38,810 | INFO     | time since job start (46829s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:40,847 | INFO     | time since job start (46831s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:42,876 | INFO     | time since job start (46833s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:44,903 | INFO     | time since job start (46835s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:46,909 | INFO     | time since job start (46837s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:48,918 | INFO     | time since job start (46839s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:50,929 | INFO     | time since job start (46841s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:52,941 | INFO     | time since job start (46843s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:02:54,948 | INFO     | time since job start (46845s) is within the limit (172800.0s)
[2025-10-12 00:04:02] 2025-10-12 04:03:07,924 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 00:04:02] 2025-10-12 04:03:08,228 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,229 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,229 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,274 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,274 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,274 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,275 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:04:02] 2025-10-12 04:03:08,275 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:04:02] 2025-10-12 04:03:08,316 | INFO     | job 6838451348 has completed (purged errors)
[2025-10-12 00:04:02] 2025-10-12 04:03:08,316 | INFO     | overall cleanup function is called
[2025-10-12 00:04:02] 2025-10-12 04:03:08,292 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9995104166666
[2025-10-12 00:04:02] 2025-10-12 04:03:09,554 | INFO     | --- collectZombieJob: --- 10, [3563653]
[2025-10-12 00:04:02] 2025-10-12 04:03:09,555 | INFO     | zombie collector waiting for pid 3563653
[2025-10-12 00:04:02] 2025-10-12 04:03:09,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:04:02] 2025-10-12 04:03:09,555 | INFO     | collected zombie processes
[2025-10-12 00:04:02] 2025-10-12 04:03:09,555 | INFO     | will attempt to kill all subprocesses of pid=3563653
[2025-10-12 00:04:02] 2025-10-12 04:03:10,009 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:04:02] 2025-10-12 04:03:10,011 | INFO     | extracted standard info from prmon json
[2025-10-12 00:04:02] 2025-10-12 04:03:10,012 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:04:02] 2025-10-12 04:03:10,012 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:04:02] 2025-10-12 04:03:10,013 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:04:02] 2025-10-12 04:03:10,081 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:04:02] 2025-10-12 04:03:10,082 | INFO     | could have reported an average CPU frequency of 999 MHz (1 samples)
[2025-10-12 00:04:02] 2025-10-12 04:03:10,387 | INFO     | PID=3552702 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 00:04:02] 2025-10-12 04:03:10,388 | INFO     | .. there are 31 such processes running
[2025-10-12 00:04:02] 2025-10-12 04:03:16,824 | INFO     | process IDs to be killed: [3563653] (in reverse order)
[2025-10-12 00:04:02] 2025-10-12 04:03:18,382 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:04:02] 2025-10-12 04:03:18,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:04:02] 2025-10-12 04:03:18,604 | INFO     | did not find any defunct processes belonging to 3563653
[2025-10-12 00:04:02] 2025-10-12 04:03:18,821 | INFO     | did not find any defunct processes belonging to 3563653
[2025-10-12 00:04:02] 2025-10-12 04:03:18,822 | INFO     | ready for new job
[2025-10-12 00:04:02] 2025-10-12 04:03:18,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:04:02] 2025-10-12 04:03:18,917 | INFO     | ***************************************
[2025-10-12 00:04:02] 2025-10-12 04:03:18,918 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:04:02] 2025-10-12 04:03:18,918 | INFO     | ***************************************
[2025-10-12 00:04:02] 2025-10-12 04:03:18,918 | INFO     | 
[2025-10-12 00:04:02] 2025-10-12 04:03:19,207 | INFO     | architecture information:
[2025-10-12 00:04:02] 2025-10-12 04:03:19,220 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:04:02] 2025-10-12 04:03:19,440 | INFO     | cat /etc/os-release:
[2025-10-12 00:04:02] NAME="CentOS Linux"
[2025-10-12 00:04:02] VERSION="7 (Core)"
[2025-10-12 00:04:02] ID="centos"
[2025-10-12 00:04:02] ID_LIKE="rhel fedora"
[2025-10-12 00:04:02] VERSION_ID="7"
[2025-10-12 00:04:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:04:02] ANSI_COLOR="0;31"
[2025-10-12 00:04:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:04:02] HOME_URL="https://www.centos.org/"
[2025-10-12 00:04:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:04:02] 
[2025-10-12 00:04:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:04:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:04:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:04:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:04:02] 
[2025-10-12 00:04:02] 2025-10-12 04:03:19,441 | INFO     | ***************************************
[2025-10-12 00:04:02] 2025-10-12 04:03:19,945 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 00:04:02] 2025-10-12 04:03:20,123 | INFO     | sufficient remaining disk space (94242865152 B)
[2025-10-12 00:04:02] 2025-10-12 04:03:20,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:04:02] 2025-10-12 04:03:20,142 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:04:02] 2025-10-12 04:03:20,142 | INFO     | update_server=False
[2025-10-12 00:04:02] 2025-10-12 04:03:20,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:04:02] 2025-10-12 04:03:20,219 | INFO     | all data control threads have been joined
[2025-10-12 00:04:02] 2025-10-12 04:03:20,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:04:02] 2025-10-12 04:03:20,378 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 00:04:02] 2025-10-12 04:03:20,379 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 00:04:02] 2025-10-12 04:03:20,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:04:02] 2025-10-12 04:03:20,380 | INFO     | will abort loop
[2025-10-12 00:04:02] 2025-10-12 04:03:20,434 | INFO     | all job control threads have been joined
[2025-10-12 00:04:02] 2025-10-12 04:03:20,435 | INFO     | all payload control threads have been joined
[2025-10-12 00:04:02] 2025-10-12 04:03:20,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:04:02] 2025-10-12 04:03:21,151 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,224 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,226 | INFO     | [job] validate thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,227 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,237 | INFO     | [data] control thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,275 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,386 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,392 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,402 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,447 | INFO     | [job] control thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,449 | INFO     | [payload] control thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,513 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:04:02] 2025-10-12 04:03:21,732 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:21,790 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:22,737 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:25,522 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:04:02] 2025-10-12 04:03:40,299 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:04:02] 2025-10-12 04:03:42,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140440493074240)>', '<ExcThread(monitor, started 140439852148480)>']
[2025-10-12 00:04:02] 2025-10-12 04:03:47,301 | INFO     | all workflow threads have been joined
[2025-10-12 00:04:02] 2025-10-12 04:03:47,302 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:04:02] 2025-10-12 04:03:47,303 | INFO     | traces error code: 0
[2025-10-12 00:04:02] 2025-10-12 04:03:47,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:04:02] 2025-10-12 04:03:57,170 | INFO     | PID=3552702 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 00:04:02] 2025-10-12 04:03:57,171 | INFO     | .. there are 31 such processes running
[2025-10-12 00:04:02] 2025-10-12 04:03:57,205 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:04:02] 2025-10-12 04:03:57,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:04:02] 2025-10-12 04:03:57,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:04:02] 2025-10-12 04:03:57,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:04:02] 2025-10-12 04:03:57,207 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 00:04:02] 2025-10-12 04:03:57,237 | INFO     | [monitor] control thread has ended
[2025-10-12 00:04:02] 2025-10-12 04:03:59,444 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:04:02] 2025-10-12 04:03:59,488 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:04:02] 2025-10-12 04:03:59,547 [wrapper] pilotpid: 3552702
[2025-10-12 00:04:02] 2025-10-12 04:03:59,626 [wrapper] Pilot exit status: 0
[2025-10-12 00:04:02] 2025-10-12 04:03:59,914 [wrapper] pandaids: 6838451348
[2025-10-12 00:04:02] 2025-10-12 04:04:01,280 [wrapper] cleanup supervisor_pilot 1246071 3552703
[2025-10-12 00:04:02] 2025-10-12 04:04:01,350 [wrapper] Test setup, not cleaning
[2025-10-12 00:04:02] 2025-10-12 04:04:01,401 [wrapper] apfmon messages muted
[2025-10-12 00:04:02] 2025-10-12 04:04:01,453 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:04:02] 2025-10-12 04:04:01,526 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:04:02]  *** Error codes and diagnostics ***
[2025-10-12 00:04:02]  *** Listing of results directory ***
[2025-10-12 00:04:02] total 423864
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 08:28 pilot3.tar.gz
[2025-10-12 00:04:02] -rwx------. 1 boincer umatlas     36292 Oct 11 08:50 runpilot2-wrapper.sh
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 08:50 queuedata.json
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas       100 Oct 11 10:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:04:02] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 10:59 run_atlas
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas       105 Oct 11 10:59 job.xml
[2025-10-12 00:04:02] -rw-r--r--. 2 boincer umatlas 222156404 Oct 11 10:59 EVNT.46676267._002327.pool.root.1
[2025-10-12 00:04:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 10:59 start_atlas.sh
[2025-10-12 00:04:02] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 10:59 shared
[2025-10-12 00:04:02] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 10:59 input.tar.gz
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas         0 Oct 11 10:59 boinc_lockfile
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 11:00 pandaJob.out
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas    975536 Oct 11 11:02 agis_schedconf.cvmfs.json
[2025-10-12 00:04:02] drwx------. 5 boincer umatlas      4096 Oct 11 11:02 pilot3
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas 198199760 Oct 11 23:53 HITS.46676269._058028.pool.root.1
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas       532 Oct 11 23:54 boinc_task_state.xml
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas      1043 Oct 12 00:00 memory_monitor_summary.json
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas   1560580 Oct 12 00:01 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas    756866 Oct 12 00:01 log.46676269._058028.job.log.tgz.1
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas      1166 Oct 12 00:03 heartbeat.json
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas      6861 Oct 12 00:03 init_data.xml
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas        96 Oct 12 00:03 pilot_heartbeat.json
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas       893 Oct 12 00:03 pilotlog.txt
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 00:03 boinc_mmap_file
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas        29 Oct 12 00:03 wrapper_checkpoint.txt
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas   4137838 Oct 12 00:04 log.46676269._058028.job.log.1
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas       357 Oct 12 00:04 output.list
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas       620 Oct 12 00:04 runtime_log
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas   4904960 Oct 12 00:04 result.tar.gz
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas      8714 Oct 12 00:04 runtime_log.err
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas       661 Oct 12 00:04 pQyNDm0EoR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSUgNDmIlfsen.diag
[2025-10-12 00:04:02] -rw-r--r--. 1 boincer umatlas     21756 Oct 12 00:04 stderr.txt
[2025-10-12 00:04:02] HITS file was successfully produced:
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas 198199760 Oct 11 23:53 shared/HITS.pool.root.1
[2025-10-12 00:04:02]  *** Contents of shared directory: ***
[2025-10-12 00:04:02] total 415884
[2025-10-12 00:04:02] -rw-r--r--. 2 boincer umatlas 222156404 Oct 11 10:59 ATLAS.root_0
[2025-10-12 00:04:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 10:59 start_atlas.sh
[2025-10-12 00:04:02] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 10:59 input.tar.gz
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas 198199760 Oct 11 23:53 HITS.pool.root.1
[2025-10-12 00:04:02] -rw-------. 1 boincer umatlas   4904960 Oct 12 00:04 result.tar.gz
00:04:04 (3546292): run_atlas exited; CPU time 125662.289287
00:04:04 (3546292): called boinc_finish(0)

</stderr_txt>
]]>

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