Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:45:10 (2238263): wrapper (7.7.26015): starting
01:45:10 (2238263): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 01:45:10] Arguments: --nthreads 3
[2025-10-12 01:45:10] Threads: 3
[2025-10-12 01:45:10] Checking for CVMFS
[2025-10-12 01:45:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 01:45:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 01:45:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 01:45:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 01:45:11] 2.9.2.0 1632445 2050 79144 151600 3 57 28714012 36864001 0 130560 0 1576528 99.990 76026 1028 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 01:45:11] CVMFS is ok
[2025-10-12 01:45:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 01:45:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 01:45:11] Further information can be found at the LHC@home message board.
[2025-10-12 01:45:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 01:45:11] Checking for apptainer binary...
[2025-10-12 01:45:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 01:45:11] Running /usr/bin/apptainer --version
[2025-10-12 01:45:11] apptainer version 1.4.1-1.1
[2025-10-12 01:45:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 01:45:11] atlasA223b
[2025-10-12 01:45:11] apptainer works
[2025-10-12 01:45:11] Set ATHENA_PROC_NUMBER=3
[2025-10-12 01:45:11] Set ATHENA_CORE_NUMBER=3
[2025-10-12 01:45:11] Starting ATLAS job with PandaID=6838119471
[2025-10-12 01:45:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:09:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:09:47] 2025-10-12 01:09:16,755 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:09:47] 2025-10-12 01:09:16,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:09:47] 2025-10-12 01:09:16,757 | INFO     | did not find any defunct processes belonging to 2248449
[2025-10-12 03:09:47] 2025-10-12 01:09:16,758 | INFO     | did not find any defunct processes belonging to 2248449
[2025-10-12 03:09:47] 2025-10-12 01:09:16,758 | INFO     | ready for new job
[2025-10-12 03:09:47] 2025-10-12 01:09:16,759 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:09:47] 2025-10-12 01:09:16,759 | INFO     | ***************************************
[2025-10-12 03:09:47] 2025-10-12 01:09:16,759 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:09:47] 2025-10-12 01:09:16,759 | INFO     | ***************************************
[2025-10-12 03:09:47] 2025-10-12 01:09:16,759 | INFO     | 
[2025-10-12 03:09:47] 2025-10-12 01:09:16,760 | INFO     | architecture information:
[2025-10-12 03:09:47] 2025-10-12 01:09:16,760 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:09:47] 2025-10-12 01:09:16,769 | INFO     | cat /etc/os-release:
[2025-10-12 03:09:47] NAME="CentOS Linux"
[2025-10-12 03:09:47] VERSION="7 (Core)"
[2025-10-12 03:09:47] ID="centos"
[2025-10-12 03:09:47] ID_LIKE="rhel fedora"
[2025-10-12 03:09:47] VERSION_ID="7"
[2025-10-12 03:09:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:09:47] ANSI_COLOR="0;31"
[2025-10-12 03:09:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:09:47] HOME_URL="https://www.centos.org/"
[2025-10-12 03:09:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:09:47] 
[2025-10-12 03:09:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:09:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:09:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:09:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:09:47] 
[2025-10-12 03:09:47] 2025-10-12 01:09:16,770 | INFO     | ***************************************
[2025-10-12 03:09:47] 2025-10-12 01:09:17,273 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 03:09:47] 2025-10-12 01:09:17,287 | INFO     | sufficient remaining disk space (376191320064 B)
[2025-10-12 03:09:47] 2025-10-12 01:09:17,287 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:09:47] 2025-10-12 01:09:17,287 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:09:47] 2025-10-12 01:09:17,287 | INFO     | update_server=False
[2025-10-12 03:09:47] 2025-10-12 01:09:17,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:09:47] 2025-10-12 01:09:17,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:09:47] 2025-10-12 01:09:17,486 | INFO     | all job control threads have been joined
[2025-10-12 03:09:47] 2025-10-12 01:09:17,683 | INFO     | all data control threads have been joined
[2025-10-12 03:09:47] 2025-10-12 01:09:17,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:09:47] 2025-10-12 01:09:17,689 | INFO     | aborting loop
[2025-10-12 03:09:47] 2025-10-12 01:09:18,293 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:18,319 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:18,392 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:18,425 | INFO     | all payload control threads have been joined
[2025-10-12 03:09:47] 2025-10-12 01:09:18,492 | INFO     | [job] control thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:18,688 | INFO     | [data] control thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:18,695 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,225 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,294 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,421 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,428 | INFO     | [payload] control thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,658 | INFO     | [job] validate thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:09:47] 2025-10-12 01:09:19,690 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:19,725 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:20,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:09:47] 2025-10-12 01:09:21,269 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:22,764 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:09:47] 2025-10-12 01:09:23,684 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:09:47] 2025-10-12 01:09:25,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630778722112)>', '<ExcThread(monitor, started 140629745055488)>']
[2025-10-12 03:09:47] 2025-10-12 01:09:30,630 | INFO     | all workflow threads have been joined
[2025-10-12 03:09:47] 2025-10-12 01:09:30,631 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:09:47] 2025-10-12 01:09:30,631 | INFO     | traces error code: 0
[2025-10-12 03:09:47] 2025-10-12 01:09:30,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:09:47] 2025-10-12 01:09:47,634 | INFO     | PID=2241991 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:09:47] 2025-10-12 01:09:47,635 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:09:47] 2025-10-12 01:09:47,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:09:47] 2025-10-12 01:09:47,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:09:47] 2025-10-12 01:09:47,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:09:47] 2025-10-12 01:09:47,635 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 03:09:47] 2025-10-12 01:09:47,635 | INFO     | [monitor] control thread has ended
[2025-10-12 03:09:47] 2025-10-12 01:09:47,688 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:09:47] 2025-10-12 01:09:47,691 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:09:47] 2025-10-12 01:09:47,693 [wrapper] pilotpid: 2241991
[2025-10-12 03:09:47] 2025-10-12 01:09:47,696 [wrapper] Pilot exit status: 0
[2025-10-12 03:09:47] 2025-10-12 01:09:47,703 [wrapper] pandaids: 6838119471
[2025-10-12 03:09:47] 2025-10-12 01:09:47,723 [wrapper] cleanup supervisor_pilot 2260873 2241992
[2025-10-12 03:09:47] 2025-10-12 01:09:47,726 [wrapper] Test setup, not cleaning
[2025-10-12 03:09:47] 2025-10-12 01:09:47,728 [wrapper] apfmon messages muted
[2025-10-12 03:09:47] 2025-10-12 01:09:47,731 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:09:47] 2025-10-12 01:09:47,733 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:09:47]  *** Error codes and diagnostics ***
[2025-10-12 03:09:47]     "exeErrorCode": 0,
[2025-10-12 03:09:47]     "exeErrorDiag": "",
[2025-10-12 03:09:47]     "pilotErrorCode": 0,
[2025-10-12 03:09:47]     "pilotErrorDiag": "",
[2025-10-12 03:09:47]  *** Listing of results directory ***
[2025-10-12 03:09:47] total 410368
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc    557409 Oct 11 08:35 pilot3.tar.gz
[2025-10-12 03:09:47] -rwx------ 1 boinc boinc     36292 Oct 11 08:40 runpilot2-wrapper.sh
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc      5112 Oct 11 08:40 queuedata.json
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc       100 Oct 12 01:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:09:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 01:45 run_atlas
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc       105 Oct 12 01:45 job.xml
[2025-10-12 03:09:47] -rw-r--r-- 2 boinc boinc 221230078 Oct 12 01:45 EVNT.46676267._002123.pool.root.1
[2025-10-12 03:09:47] -rw-r--r-- 2 boinc boinc    569677 Oct 12 01:45 input.tar.gz
[2025-10-12 03:09:47] -rw-r--r-- 2 boinc boinc     15120 Oct 12 01:45 start_atlas.sh
[2025-10-12 03:09:47] drwxrwx--x 2 boinc boinc      4096 Oct 12 01:45 shared
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 01:45 boinc_setup_complete
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc      6449 Oct 12 01:45 init_data.xml
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 01:45 boinc_lockfile
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc      2550 Oct 12 01:45 pandaJob.out
[2025-10-12 03:09:47] -rw------- 1 boinc boinc    975528 Oct 12 01:45 agis_schedconf.cvmfs.json
[2025-10-12 03:09:47] -rw------- 1 boinc boinc   1560580 Oct 12 01:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:09:47] drwx------ 5 boinc boinc      4096 Oct 12 01:45 pilot3
[2025-10-12 03:09:47] -rw------- 1 boinc boinc 193128609 Oct 12 03:08 HITS.46676269._052821.pool.root.1
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc       529 Oct 12 03:08 boinc_task_state.xml
[2025-10-12 03:09:47] -rw------- 1 boinc boinc      1017 Oct 12 03:09 memory_monitor_summary.json
[2025-10-12 03:09:47] -rw------- 1 boinc boinc    243764 Oct 12 03:09 log.46676269._052821.job.log.tgz.1
[2025-10-12 03:09:47] -rw------- 1 boinc boinc      7761 Oct 12 03:09 heartbeat.json
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc      8192 Oct 12 03:09 boinc_mmap_file
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc        27 Oct 12 03:09 wrapper_checkpoint.txt
[2025-10-12 03:09:47] -rw------- 1 boinc boinc       817 Oct 12 03:09 pilotlog.txt
[2025-10-12 03:09:47] -rw------- 1 boinc boinc        95 Oct 12 03:09 pilot_heartbeat.json
[2025-10-12 03:09:47] -rw------- 1 boinc boinc    737528 Oct 12 03:09 log.46676269._052821.job.log.1
[2025-10-12 03:09:47] -rw------- 1 boinc boinc       357 Oct 12 03:09 output.list
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc       620 Oct 12 03:09 runtime_log
[2025-10-12 03:09:47] -rw------- 1 boinc boinc   1003520 Oct 12 03:09 result.tar.gz
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc      8797 Oct 12 03:09 runtime_log.err
[2025-10-12 03:09:47] -rw------- 1 boinc boinc       662 Oct 12 03:09 N58KDmtSiR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUdfNDmnkwtum.diag
[2025-10-12 03:09:47] -rw-r--r-- 1 boinc boinc     10065 Oct 12 03:09 stderr.txt
[2025-10-12 03:09:47] HITS file was successfully produced:
[2025-10-12 03:09:47] -rw------- 1 boinc boinc 193128609 Oct 12 03:08 shared/HITS.pool.root.1
[2025-10-12 03:09:47]  *** Contents of shared directory: ***
[2025-10-12 03:09:47] total 406216
[2025-10-12 03:09:47] -rw-r--r-- 2 boinc boinc 221230078 Oct 12 01:45 ATLAS.root_0
[2025-10-12 03:09:47] -rw-r--r-- 2 boinc boinc    569677 Oct 12 01:45 input.tar.gz
[2025-10-12 03:09:47] -rw-r--r-- 2 boinc boinc     15120 Oct 12 01:45 start_atlas.sh
[2025-10-12 03:09:47] -rw------- 1 boinc boinc 193128609 Oct 12 03:08 HITS.pool.root.1
[2025-10-12 03:09:47] -rw------- 1 boinc boinc   1003520 Oct 12 03:09 result.tar.gz
03:10:09 (2238263): run_atlas exited; CPU time 14393.539341
03:10:09 (2238263): called boinc_finish(0)

</stderr_txt>
]]>

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