Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:36:00 (4136483): wrapper (7.7.26015): starting
08:36:00 (4136483): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 08:36:01] Arguments: --nthreads 12
[2025-10-11 08:36:01] Threads: 12
[2025-10-11 08:36:01] Checking for CVMFS
[2025-10-11 08:36:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 08:36:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 08:36:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 08:36:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 08:36:05] 2.11.5.0 2127 28667 212300 151589 1 237 45139656 45568001 27273 130560 0 230339550 99.875 87638417 26380 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-11 08:36:05] CVMFS is ok
[2025-10-11 08:36:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 08:36:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 08:36:05] Further information can be found at the LHC@home message board.
[2025-10-11 08:36:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 08:36:05] Checking for apptainer binary...
[2025-10-11 08:36:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 08:36:05] Running /usr/bin/apptainer --version
[2025-10-11 08:36:05] apptainer version 1.4.1-1.el9
[2025-10-11 08:36:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 08:36:07] wns0041.triumf.lcg
[2025-10-11 08:36:07] apptainer works
[2025-10-11 08:36:07] Set ATHENA_PROC_NUMBER=12
[2025-10-11 08:36:07] Set ATHENA_CORE_NUMBER=12
[2025-10-11 08:36:07] Starting ATLAS job with PandaID=6838366582
[2025-10-11 08:36:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 08:45:27]  *** The last 200 lines of the pilot log: ***
[2025-10-11 08:45:27] 2025-10-11 15:44:14,446 | INFO     | could have reported an average CPU frequency of 1357 MHz (4 samples)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,446 | INFO     | ..............................
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . Timing measurements:
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . get job = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . initial setup = 4 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . payload setup = 46 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . stage-in = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . payload execution = 104 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . stage-out = 2 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . log creation = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | ..............................
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838366582/pilotlog.txt
[2025-10-11 08:45:27] 2025-10-11 15:44:14,586 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-11 08:45:27] - Log from pilotlog.txt -
[2025-10-11 08:45:27] 2025-10-11 15:44:14,430 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838366582/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,443 | INFO     | extracted standard info from prmon json
[2025-10-11 08:45:27] 2025-10-11 15:44:14,444 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 08:45:27] 2025-10-11 15:44:14,444 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 08:45:27] 2025-10-11 15:44:14,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 08:45:27] 2025-10-11 15:44:14,445 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 08:45:27] 2025-10-11 15:44:14,445 | WARNING  | wrong length of table data, x=[1760197227.0], y=[1326.0] (must be same and length>=4)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,446 | INFO     | could have reported an average CPU frequency of 1357 MHz (4 samples)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,446 | INFO     | ..............................
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . Timing measurements:
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . get job = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . initial setup = 4 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . payload setup = 46 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . stage-in = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . payload execution = 104 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . stage-out = 2 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . log creation = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | ..............................
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838366582/pilotlog.txt
[2025-10-11 08:45:27] 2025-10-11 15:44:14,587 | WARNING  | 
[2025-10-11 08:45:27] [begin log extracts]
[2025-10-11 08:45:27] - Log from pilotlog.txt -
[2025-10-11 08:45:27] 2025-10-11 15:44:14,430 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838366582/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,443 | INFO     | extracted standard info from prmon json
[2025-10-11 08:45:27] 2025-10-11 15:44:14,444 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 08:45:27] 2025-10-11 15:44:14,444 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 08:45:27] 2025-10-11 15:44:14,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 08:45:27] 2025-10-11 15:44:14,445 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 08:45:27] 2025-10-11 15:44:14,445 | WARNING  | wrong length of table data, x=[1760197227.0], y=[1326.0] (must be same and length>=4)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,446 | INFO     | could have reported an average CPU frequency of 1357 MHz (4 samples)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,446 | INFO     | ..............................
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . Timing measurements:
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . get job = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . initial setup = 4 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . payload setup = 46 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,467 | INFO     | . stage-in = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . payload execution = 104 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . stage-out = 2 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | . log creation = 0 s
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | ..............................
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 08:45:27] 2025-10-11 15:44:14,468 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838366582/pilotlog.txt
[2025-10-11 08:45:27] [end log extracts]
[2025-10-11 08:45:27] 2025-10-11 15:44:14,587 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-11 08:45:27] 2025-10-11 15:44:14,588 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-11 08:45:27] 2025-10-11 15:44:14,723 | INFO     | PID=4140727 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:45:27] 2025-10-11 15:44:14,723 | INFO     | .. there are 42 such processes running
[2025-10-11 08:45:27] 2025-10-11 15:44:15,095 | INFO     | 
[2025-10-11 08:45:27] 2025-10-11 15:44:15,095 | INFO     | job summary report
[2025-10-11 08:45:27] 2025-10-11 15:44:15,095 | INFO     | --------------------------------------------------
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | PanDA job id: 6838366582
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | task id: 46676269
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-11 08:41:19,302 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | pilot state: failed 
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | transexitcode: 65
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | exeerrorcode: 65
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | exitcode: 65
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 08:45:27] 2025-10-11 15:44:15,096 | INFO     | cpuconsumptiontime: 32 s
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | nevents: 0
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | neventsw: 0
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | pid: 4147991
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | pgrp: 4147991
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | corecount: 12
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | event service: False
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | sizes: {0: 2348029, 2: 2348711, 3: 2348910, 15: 2348910, 27: 2348938, 38: 2348966, 45: 2349384, 49: 2349412, 156: 2372698, 157: 2372674, 160: 2376994, 163: 2377302
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | --------------------------------------------------
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | 
[2025-10-11 08:45:27] 2025-10-11 15:44:15,097 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-11 08:45:27] 2025-10-11 15:44:15,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,205 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,205 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,205 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,206 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,207 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 08:45:27] 2025-10-11 15:44:15,207 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,207 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 08:45:27] 2025-10-11 15:44:15,216 | INFO     | job 6838366582 has completed (purged errors)
[2025-10-11 08:45:27] 2025-10-11 15:44:15,217 | INFO     | overall cleanup function is called
[2025-10-11 08:45:27] 2025-10-11 15:44:16,224 | INFO     | --- collectZombieJob: --- 10, [4147991]
[2025-10-11 08:45:27] 2025-10-11 15:44:16,225 | INFO     | zombie collector waiting for pid 4147991
[2025-10-11 08:45:27] 2025-10-11 15:44:16,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 08:45:27] 2025-10-11 15:44:16,225 | INFO     | collected zombie processes
[2025-10-11 08:45:27] 2025-10-11 15:44:16,225 | INFO     | will attempt to kill all subprocesses of pid=4147991
[2025-10-11 08:45:27] 2025-10-11 15:44:17,428 | INFO     | process IDs to be killed: [4147991] (in reverse order)
[2025-10-11 08:45:27] 2025-10-11 15:44:17,686 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 08:45:27] 2025-10-11 15:44:17,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 08:45:27] 2025-10-11 15:44:17,762 | INFO     | did not find any defunct processes belonging to 4147991
[2025-10-11 08:45:27] 2025-10-11 15:44:17,845 | INFO     | did not find any defunct processes belonging to 4147991
[2025-10-11 08:45:27] 2025-10-11 15:44:17,845 | INFO     | ready for new job
[2025-10-11 08:45:27] 2025-10-11 15:44:17,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 08:45:27] 2025-10-11 15:44:17,848 | INFO     | ***************************************
[2025-10-11 08:45:27] 2025-10-11 15:44:17,848 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 08:45:27] 2025-10-11 15:44:17,868 | INFO     | ***************************************
[2025-10-11 08:45:27] 2025-10-11 15:44:17,868 | INFO     | 
[2025-10-11 08:45:27] 2025-10-11 15:44:17,872 | INFO     | architecture information:
[2025-10-11 08:45:27] 2025-10-11 15:44:17,892 | INFO     | executing command: cat /etc/os-release
[2025-10-11 08:45:27] 2025-10-11 15:44:17,967 | INFO     | cat /etc/os-release:
[2025-10-11 08:45:27] NAME="CentOS Linux"
[2025-10-11 08:45:27] VERSION="7 (Core)"
[2025-10-11 08:45:27] ID="centos"
[2025-10-11 08:45:27] ID_LIKE="rhel fedora"
[2025-10-11 08:45:27] VERSION_ID="7"
[2025-10-11 08:45:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 08:45:27] ANSI_COLOR="0;31"
[2025-10-11 08:45:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 08:45:27] HOME_URL="https://www.centos.org/"
[2025-10-11 08:45:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 08:45:27] 
[2025-10-11 08:45:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 08:45:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 08:45:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 08:45:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 08:45:27] 
[2025-10-11 08:45:27] 2025-10-11 15:44:17,968 | INFO     | ***************************************
[2025-10-11 08:45:27] 2025-10-11 15:44:18,471 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-11 08:45:27] 2025-10-11 15:44:18,588 | INFO     | sufficient remaining disk space (1830079692800 B)
[2025-10-11 08:45:27] 2025-10-11 15:44:18,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 08:45:27] 2025-10-11 15:44:18,588 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 08:45:27] 2025-10-11 15:44:18,588 | INFO     | update_server=False
[2025-10-11 08:45:27] 2025-10-11 15:44:18,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 08:45:27] 2025-10-11 15:44:18,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 08:45:27] 2025-10-11 15:44:18,772 | INFO     | all data control threads have been joined
[2025-10-11 08:45:27] 2025-10-11 15:44:19,065 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 08:45:27] 2025-10-11 15:44:19,065 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 08:45:27] 2025-10-11 15:44:19,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:45:27] 2025-10-11 15:44:19,066 | INFO     | will abort loop
[2025-10-11 08:45:27] 2025-10-11 15:44:19,533 | INFO     | all payload control threads have been joined
[2025-10-11 08:45:27] 2025-10-11 15:44:19,594 | INFO     | [job] retrieve thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:19,638 | INFO     | all job control threads have been joined
[2025-10-11 08:45:27] 2025-10-11 15:44:19,778 | INFO     | [data] control thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:19,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 08:45:27] 2025-10-11 15:44:20,066 | INFO     | [job] validate thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,067 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,072 | INFO     | [job] job monitor thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:45:27] 2025-10-11 15:44:20,158 | INFO     | [payload] failed_post thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,552 | INFO     | [payload] control thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,586 | INFO     | [data] copytool_in thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,592 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,608 | INFO     | [data] copytool_out thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,637 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,650 | INFO     | [job] control thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:20,788 | INFO     | [payload] validate_post thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:21,126 | INFO     | [job] queue monitor thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:23,948 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 08:45:27] 2025-10-11 15:44:48,889 | INFO     | PID=4140727 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:45:27] 2025-10-11 15:44:48,890 | INFO     | .. there are 42 such processes running
[2025-10-11 08:45:27] 2025-10-11 15:44:48,892 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 08:45:27] 2025-10-11 15:44:48,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 08:45:27] 2025-10-11 15:44:48,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 08:45:27] 2025-10-11 15:45:18,633 | INFO     | [monitor] cgroup control has ended
[2025-10-11 08:45:27] 2025-10-11 15:45:20,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351773304640)>', '<ExcThread(monitor, started 140350849009408)>']
[2025-10-11 08:45:27] 2025-10-11 15:45:21,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 08:45:27] 2025-10-11 15:45:21,095 | INFO     | [monitor] control thread has ended
[2025-10-11 08:45:27] 2025-10-11 15:45:25,480 | INFO     | all workflow threads have been joined
[2025-10-11 08:45:27] 2025-10-11 15:45:25,480 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 08:45:27] 2025-10-11 15:45:25,481 | INFO     | traces error code: 0
[2025-10-11 08:45:27] 2025-10-11 15:45:25,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 08:45:27] 2025-10-11 15:45:26,247 [wrapper] ==== pilot stdout END ====
[2025-10-11 08:45:27] 2025-10-11 15:45:26,262 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 08:45:27] 2025-10-11 15:45:26,318 [wrapper] pilotpid: 4140727
[2025-10-11 08:45:27] 2025-10-11 15:45:26,348 [wrapper] Pilot exit status: 0
[2025-10-11 08:45:27] 2025-10-11 15:45:26,496 [wrapper] pandaids: 6838366582
[2025-10-11 08:45:27] 2025-10-11 15:45:26,674 [wrapper] cleanup supervisor_pilot 4140733 4140728
[2025-10-11 08:45:27] 2025-10-11 15:45:26,677 [wrapper] Test setup, not cleaning
[2025-10-11 08:45:27] 2025-10-11 15:45:26,680 [wrapper] apfmon messages muted
[2025-10-11 08:45:27] 2025-10-11 15:45:26,683 [wrapper] ==== wrapper stdout END ====
[2025-10-11 08:45:27] 2025-10-11 15:45:26,687 [wrapper] ==== wrapper stderr END ====
[2025-10-11 08:45:27]  *** Error codes and diagnostics ***
[2025-10-11 08:45:27]     "exeErrorCode": 65,
[2025-10-11 08:45:27]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 08:45:27]     "pilotErrorCode": 1305,
[2025-10-11 08:45:27]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 08:45:27]  *** Listing of results directory ***
[2025-10-11 08:45:27] total 219476
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc      5112 Oct 11 05:28 queuedata.json
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc    557409 Oct 11 05:28 pilot3.tar.gz
[2025-10-11 08:45:27] -rwx------. 1 boinc boinc     36292 Oct 11 05:28 runpilot2-wrapper.sh
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc       100 Oct 11 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 08:45:27] -rwxr-xr-x. 1 boinc boinc      7986 Oct 11 08:35 run_atlas
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc       105 Oct 11 08:35 job.xml
[2025-10-11 08:45:27] -rw-r--r--. 2 boinc boinc 220588654 Oct 11 08:36 EVNT.46676267._002307.pool.root.1
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc      6594 Oct 11 08:36 init_data.xml
[2025-10-11 08:45:27] -rw-r--r--. 2 boinc boinc     15120 Oct 11 08:36 start_atlas.sh
[2025-10-11 08:45:27] drwxrwx--x. 2 boinc boinc      4096 Oct 11 08:36 shared
[2025-10-11 08:45:27] -rw-r--r--. 2 boinc boinc    569680 Oct 11 08:36 input.tar.gz
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc         0 Oct 11 08:36 boinc_lockfile
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc      2550 Oct 11 08:36 pandaJob.out
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc    975512 Oct 11 08:37 agis_schedconf.cvmfs.json
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc   1560580 Oct 11 08:37 agis_ddmendpoints.agis.ALL.json
[2025-10-11 08:45:27] drwx------. 5 boinc boinc      4096 Oct 11 08:37 pilot3
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc       968 Oct 11 08:41 memory_monitor_summary.json
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc     22547 Oct 11 08:41 log.46676269._057465.job.log.tgz.1
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc      8413 Oct 11 08:44 heartbeat.json
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc        95 Oct 11 08:44 pilot_heartbeat.json
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc        23 Oct 11 08:45 wrapper_checkpoint.txt
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc      5009 Oct 11 08:45 pilotlog.txt
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc      8192 Oct 11 08:45 boinc_mmap_file
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc       525 Oct 11 08:45 boinc_task_state.xml
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc    104895 Oct 11 08:45 log.46676269._057465.job.log.1
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc       188 Oct 11 08:45 output.list
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc       620 Oct 11 08:45 runtime_log
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc    143360 Oct 11 08:45 result.tar.gz
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc      8528 Oct 11 08:45 runtime_log.err
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc       644 Oct 11 08:45 o11NDm4snR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm9qRMDm7FtMCo.diag
[2025-10-11 08:45:27] -rw-r--r--. 1 boinc boinc     21950 Oct 11 08:45 stderr.txt
[2025-10-11 08:45:27] No HITS result produced
[2025-10-11 08:45:27]  *** Contents of shared directory: ***
[2025-10-11 08:45:27] total 216140
[2025-10-11 08:45:27] -rw-r--r--. 2 boinc boinc 220588654 Oct 11 08:36 ATLAS.root_0
[2025-10-11 08:45:27] -rw-r--r--. 2 boinc boinc     15120 Oct 11 08:36 start_atlas.sh
[2025-10-11 08:45:27] -rw-r--r--. 2 boinc boinc    569680 Oct 11 08:36 input.tar.gz
[2025-10-11 08:45:27] -rw-------. 1 boinc boinc    143360 Oct 11 08:45 result.tar.gz
08:45:29 (4136483): run_atlas exited; CPU time 52.221370
08:45:29 (4136483): called boinc_finish(0)

</stderr_txt>
]]>

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