Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 14:13:28 (26348): vboxwrapper version 26210
2025-10-11 14:13:28 (26348): BOINC client version: 8.0.2
2025-10-11 14:13:28 (26348): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-11 14:13:28 (26348): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 14:13:29 (26348): Create VM. (boinc_6879c37d999d9d28, slot#1)
2025-10-11 14:13:29 (26348): Setting Memory Size for VM. (4600MB)
2025-10-11 14:13:29 (26348): Setting CPU Count for VM. (6)
2025-10-11 14:13:30 (26348): Setting Chipset Options for VM.
2025-10-11 14:13:30 (26348): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 14:13:30 (26348): Setting Boot Options for VM.
2025-10-11 14:13:31 (26348): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 14:13:31 (26348): Enabling VM Network Access.
2025-10-11 14:13:31 (26348): Disabling USB Support for VM.
2025-10-11 14:13:32 (26348): Disabling COM Port Support for VM.
2025-10-11 14:13:32 (26348): Disabling LPT Port Support for VM.
2025-10-11 14:13:32 (26348): Disabling Audio Support for VM.
2025-10-11 14:13:32 (26348): Disabling Clipboard Support for VM.
2025-10-11 14:13:33 (26348): Disabling Drag and Drop Support for VM.
2025-10-11 14:13:33 (26348): Adding storage controller(s) to VM.
2025-10-11 14:13:33 (26348): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 14:13:35 (26348): Adding VirtualBox Guest Additions to VM.
2025-10-11 14:13:35 (26348): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 14:13:36 (26348): forwarding host port 51536 to guest port 80
2025-10-11 14:13:36 (26348): Enabling remote desktop for VM.
2025-10-11 14:13:36 (26348): Required extension pack not installed, remote desktop not enabled.
2025-10-11 14:13:36 (26348): Enabling shared directory for VM.
2025-10-11 14:13:37 (26348): Starting VM using VBoxManage interface. (boinc_6879c37d999d9d28, slot#1)
2025-10-11 14:13:41 (26348): Successfully started VM. (PID = '26040')
2025-10-11 14:13:41 (26348): Reporting VM Process ID to BOINC.
2025-10-11 14:13:41 (26348): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-11 14:13:41 (26348): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 14:13:41 (26348): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 14:13:41 (26348): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 14:13:41 (26348): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 14:13:41 (26348): Detected: Web Application Enabled (http://localhost:51536)
2025-10-11 14:13:41 (26348): Preference change detected
2025-10-11 14:13:41 (26348): Setting CPU throttle for VM. (50%)
2025-10-11 14:13:41 (26348): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 14:13:43 (26348): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 14:13:43 (26348): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 14:13:46 (26348): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 14:13:46 (26348): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 14:13:46 (26348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 14:13:50 (26348): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 14:13:50 (26348): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 14:13:55 (26348): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000125 main     Log opened 2025-10-11T14:13:54.415883000Z
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000198 main     OS Product: Linux
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000221 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000237 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000252 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000252 main     Process ID: 1338
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000253 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 14:13:55 (26348): Guest Log: 00:00:00.000642 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 14:13:56 (26348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 14:13:56 (26348): Guest Log: [INFO] Mounting shared directory
2025-10-11 14:13:56 (26348): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 14:14:05 (26348): Guest Log: 00:00:10.003990 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 174 249 000ns (GuestNow=1 760 206 445 591 481 000 ns GuestLast=1 760 192 034 417 232 000 ns fSetTimeLastLoop=true )
2025-10-11 14:14:21 (26348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 14:14:21 (26348): Guest Log: [INFO] Detected branch: prod
2025-10-11 14:14:21 (26348): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 14:14:21 (26348): Guest Log: Copying input files
2025-10-11 14:14:22 (26348): Guest Log: Copied input files into RunAtlas.
2025-10-11 14:14:22 (26348): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 14:14:22 (26348): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 14:14:22 (26348): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 14:14:22 (26348): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 14:14:29 (26348): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 14:14:29 (26348): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 14:14:29 (26348): Guest Log: 2.6.3.0 1642 0 32332 151593 4 1 3120538 4096000 0 65024 0 0 n/a 1292 2778 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 14:14:30 (26348): Guest Log: copied the webapp to /var/www
2025-10-11 14:14:30 (26348): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-11 14:14:30 (26348): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-11 14:14:30 (26348): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 14:14:30 (26348): Guest Log:  *** Starting ATLAS job. (PandaID=6838293344 taskID=46676269) ***
2025-10-11 14:38:53 (26348): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 14:39:13 (26348): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 14:44:53 (26348): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 14:45:13 (26348): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 15:39:57 (26348): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 15:40:17 (26348): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 15:54:46 (26348): Status Report: Elapsed Time: '6000.000000'
2025-10-11 15:54:46 (26348): Status Report: CPU Time: '20349.875000'
2025-10-11 16:55:14 (26348): Guest Log:  *** Job finished ***
2025-10-11 16:55:14 (26348): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:08,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:08,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:11,212 | INFO     | [monitor] cgroup control has ended
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:11,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799270065984)>', '<ExcThread(monitor, started 139798543058688)>']
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:12,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:12,644 | INFO     | [monitor] control thread has ended
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,757 | INFO     | all workflow threads have been joined
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,757 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,757 | INFO     | traces error code: 0
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,827 [wrapper] ==== pilot stdout END ====
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,829 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,831 [wrapper] pilotpid: 6037
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,834 [wrapper] Pilot exit status: 0
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,896 [wrapper] pandaids: 6838293344
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,913 [wrapper] cleanup supervisor_pilot  6480 6038
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,919 [wrapper] Test setup, not cleaning
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,922 [wrapper] apfmon messages muted
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,924 [wrapper] ==== wrapper stdout END ====
2025-10-11 16:55:14 (26348): Guest Log: 2025-10-11 20:54:16,926 [wrapper] ==== wrapper stderr END ====
2025-10-11 16:55:14 (26348): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 16:55:14 (26348): Guest Log:     "exeErrorCode": 0,
2025-10-11 16:55:14 (26348): Guest Log:     "exeErrorDiag": "",
2025-10-11 16:55:14 (26348): Guest Log:     "pilotErrorCode": 0,
2025-10-11 16:55:14 (26348): Guest Log:     "pilotErrorDiag": "",
2025-10-11 16:55:14 (26348): Guest Log:  *** Listing of results directory ***
2025-10-11 16:55:14 (26348): Guest Log: total 202784
2025-10-11 16:55:14 (26348): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 09:19 pilot3.tar.gz
2025-10-11 16:55:14 (26348): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 09:25 runpilot2-wrapper.sh
2025-10-11 16:55:14 (26348): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 09:25 queuedata.json
2025-10-11 16:55:14 (26348): Guest Log: -rwxr-xr-x. 1 atlas atlas    569675 Oct 11 18:14 input.tar.gz
2025-10-11 16:55:14 (26348): Guest Log: -rwxr-xr-x. 1 atlas atlas      9127 Oct 11 18:14 init_data.xml
2025-10-11 16:55:14 (26348): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 18:14 start_atlas.sh
2025-10-11 16:55:14 (26348): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 18:14 EVNT.46676267._002217.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 16:55:14 (26348): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 18:14 pandaJob.out
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas    975520 Oct 11 18:14 agis_schedconf.cvmfs.json
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 18:14 agis_ddmendpoints.agis.ALL.json
2025-10-11 16:55:14 (26348): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 18:14 pilot3
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas 200788491 Oct 11 20:53 HITS.46676269._055292.pool.root.1
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 11 20:53 memory_monitor_summary.json
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas    353047 Oct 11 20:53 log.46676269._055292.job.log.tgz.1
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas      7817 Oct 11 20:53 heartbeat.json
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 20:54 pilot_heartbeat.json
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas      4807 Oct 11 20:54 pilotlog.txt
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas   1158878 Oct 11 20:54 log.46676269._055292.job.log.1
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 20:54 output.list
2025-10-11 16:55:14 (26348): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 20:54 runtime_log
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas   1536000 Oct 11 20:54 result.tar.gz
2025-10-11 16:55:14 (26348): Guest Log: -rw-r--r--. 1 atlas atlas      8645 Oct 11 20:54 runtime_log.err
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas       657 Oct 11 20:54 1yKKDm01kR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxcRMDmJhn1Sn.diag
2025-10-11 16:55:14 (26348): Guest Log: Looking for outputfile HITS.46676269._055292.pool.root.1
2025-10-11 16:55:14 (26348): Guest Log: HITS file was successfully produced
2025-10-11 16:55:14 (26348): Guest Log: -rw-------. 1 atlas atlas 200788491 Oct 11 20:53 /home/atlas/RunAtlas/HITS.46676269._055292.pool.root.1
2025-10-11 16:55:15 (26348): Guest Log: Successfully finished the ATLAS job!
2025-10-11 16:55:15 (26348): Guest Log: Copying the results back to the shared directory!
2025-10-11 16:55:15 (26348): Guest Log:  *** Contents of shared directory: ***
2025-10-11 16:55:15 (26348): Guest Log: total 413696
2025-10-11 16:55:15 (26348): Guest Log: -rwxrwxrwx. 1 root root 220694963 Oct 11 18:13 ATLAS.root_0
2025-10-11 16:55:15 (26348): Guest Log: -rwxrwxrwx. 1 root root 200788491 Oct 11  2025 HITS.pool.root.1
2025-10-11 16:55:15 (26348): Guest Log: -rwxrwxrwx. 1 root root      9127 Oct 11 18:13 init_data.xml
2025-10-11 16:55:15 (26348): Guest Log: -rwxrwxrwx. 1 root root    569675 Oct 11 14:44 input.tar.gz
2025-10-11 16:55:15 (26348): Guest Log: -rwxrwxrwx. 1 root root   1536000 Oct 11  2025 result.tar.gz
2025-10-11 16:55:15 (26348): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 14:44 start_atlas.sh
2025-10-11 16:55:15 (26348): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 16:55:15 (26348): VM Completion File Detected.
2025-10-11 16:55:15 (26348): Powering off VM.
2025-10-11 16:55:16 (26348): Successfully stopped VM.
2025-10-11 16:55:16 (26348): Deregistering VM. (boinc_6879c37d999d9d28, slot#1)
2025-10-11 16:55:16 (26348): Removing network bandwidth throttle group from VM.
2025-10-11 16:55:16 (26348): Removing VM from VirtualBox.
2025-10-11 16:55:21 (26348): called boinc_finish(0)

</stderr_txt>
]]>

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