Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 13:56:19 (12584): vboxwrapper version 26210
2025-10-12 13:56:19 (12584): BOINC client version: 8.2.4
2025-10-12 13:56:19 (12584): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-12 13:56:19 (12584): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 13:56:20 (12584): Create VM. (boinc_ec213e3b5a4e2548, slot#4)
2025-10-12 13:56:20 (12584): Setting Memory Size for VM. (4800MB)
2025-10-12 13:56:20 (12584): Setting CPU Count for VM. (8)
2025-10-12 13:56:21 (12584): Setting Chipset Options for VM.
2025-10-12 13:56:21 (12584): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 13:56:21 (12584): Setting Boot Options for VM.
2025-10-12 13:56:22 (12584): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 13:56:22 (12584): Enabling VM Network Access.
2025-10-12 13:56:22 (12584): Disabling USB Support for VM.
2025-10-12 13:56:22 (12584): Disabling COM Port Support for VM.
2025-10-12 13:56:23 (12584): Disabling LPT Port Support for VM.
2025-10-12 13:56:23 (12584): Disabling Audio Support for VM.
2025-10-12 13:56:23 (12584): Disabling Clipboard Support for VM.
2025-10-12 13:56:23 (12584): Disabling Drag and Drop Support for VM.
2025-10-12 13:56:24 (12584): Adding storage controller(s) to VM.
2025-10-12 13:56:24 (12584): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 13:56:25 (12584): Attempts: 2
2025-10-12 13:56:26 (12584): Adding VirtualBox Guest Additions to VM.
2025-10-12 13:56:26 (12584): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 13:56:26 (12584): forwarding host port 58461 to guest port 80
2025-10-12 13:56:26 (12584): Enabling remote desktop for VM.
2025-10-12 13:56:27 (12584): Required extension pack not installed, remote desktop not enabled.
2025-10-12 13:56:27 (12584): Enabling shared directory for VM.
2025-10-12 13:56:27 (12584): Starting VM using VBoxManage interface. (boinc_ec213e3b5a4e2548, slot#4)
2025-10-12 13:56:34 (12584): Successfully started VM. (PID = '4036')
2025-10-12 13:56:34 (12584): Reporting VM Process ID to BOINC.
2025-10-12 13:56:34 (12584): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-12 13:56:34 (12584): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 13:56:34 (12584): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 13:56:34 (12584): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 13:56:34 (12584): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 13:56:34 (12584): Detected: Web Application Enabled (http://localhost:58461)
2025-10-12 13:56:34 (12584): Preference change detected
2025-10-12 13:56:34 (12584): Setting CPU throttle for VM. (100%)
2025-10-12 13:56:34 (12584): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 13:56:36 (12584): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 13:56:36 (12584): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 13:56:40 (12584): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 13:56:40 (12584): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 13:56:40 (12584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 13:56:50 (12584): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 13:56:50 (12584): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 13:57:01 (12584): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.000252 main     Log opened 2025-10-12T13:56:58.884630000Z
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.000397 main     OS Product: Linux
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.000460 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.000570 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.000644 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.000647 main     Process ID: 1371
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.000648 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 13:57:01 (12584): Guest Log: 00:00:00.001943 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 13:57:01 (12584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 13:57:01 (12584): Guest Log: [INFO] Mounting shared directory
2025-10-12 13:57:01 (12584): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 13:57:05 (12584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 13:57:05 (12584): Guest Log: [INFO] Detected branch: prod
2025-10-12 13:57:06 (12584): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 13:57:06 (12584): Guest Log: Copying input files
2025-10-12 13:57:08 (12584): Guest Log: Copied input files into RunAtlas.
2025-10-12 13:57:08 (12584): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 13:57:08 (12584): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 13:57:08 (12584): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 13:57:08 (12584): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 13:57:11 (12584): Guest Log: 00:00:10.021389 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 035 490 000ns (GuestNow=1 760 266 630 852 618 000 ns GuestLast=1 760 277 418 888 108 000 ns fSetTimeLastLoop=true )
2025-10-12 13:57:18 (12584): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 13:57:19 (12584): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 13:57:19 (12584): Guest Log: 2.6.3.0 1665 0 32196 151617 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 13:57:19 (12584): Guest Log: copied the webapp to /var/www
2025-10-12 13:57:19 (12584): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-12 13:57:19 (12584): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-12 13:57:20 (12584): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 13:57:20 (12584): Guest Log:  *** Starting ATLAS job. (PandaID=6838118400 taskID=46676269) ***
2025-10-12 15:36:39 (12584): Status Report: Elapsed Time: '6000.000000'
2025-10-12 15:36:39 (12584): Status Report: CPU Time: '40371.593750'
2025-10-12 17:16:44 (12584): Status Report: Elapsed Time: '12000.000000'
2025-10-12 17:16:44 (12584): Status Report: CPU Time: '87340.687500'
2025-10-12 18:26:37 (12584): Guest Log:  *** Job finished ***
2025-10-12 18:26:37 (12584): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:25:53,093 | INFO     | [data] copytool_out thread has finished
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:25:56,653 | INFO     | [data] queue_monitor thread has finished
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:31,247 | INFO     | [monitor] cgroup control has ended
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:31,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043039508288)>', '<ExcThread(monitor, started 140042156627712)>']
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:32,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:32,266 | INFO     | [monitor] control thread has ended
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,839 | INFO     | all workflow threads have been joined
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,839 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,839 | INFO     | traces error code: 0
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,975 [wrapper] ==== pilot stdout END ====
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,982 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,988 [wrapper] pilotpid: 6083
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:36,995 [wrapper] Pilot exit status: 0
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:37,086 [wrapper] pandaids: 6838118400
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:37,147 [wrapper] cleanup supervisor_pilot 15004 6084
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:37,159 [wrapper] Test setup, not cleaning
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:37,166 [wrapper] apfmon messages muted
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:37,173 [wrapper] ==== wrapper stdout END ====
2025-10-12 18:26:37 (12584): Guest Log: 2025-10-12 15:26:37,180 [wrapper] ==== wrapper stderr END ====
2025-10-12 18:26:37 (12584): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 18:26:37 (12584): Guest Log:     "exeErrorCode": 0,
2025-10-12 18:26:37 (12584): Guest Log:     "exeErrorDiag": "",
2025-10-12 18:26:37 (12584): Guest Log:     "pilotErrorCode": 0,
2025-10-12 18:26:37 (12584): Guest Log:     "pilotErrorDiag": "",
2025-10-12 18:26:37 (12584): Guest Log:  *** Listing of results directory ***
2025-10-12 18:26:37 (12584): Guest Log: total 200028
2025-10-12 18:26:37 (12584): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 05:36 pilot3.tar.gz
2025-10-12 18:26:37 (12584): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 05:52 queuedata.json
2025-10-12 18:26:37 (12584): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 05:54 runpilot2-wrapper.sh
2025-10-12 18:26:37 (12584): Guest Log: -rwxr-xr-x. 1 atlas atlas      8540 Oct 12 10:57 init_data.xml
2025-10-12 18:26:37 (12584): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 12 10:57 input.tar.gz
2025-10-12 18:26:37 (12584): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 10:57 start_atlas.sh
2025-10-12 18:26:37 (12584): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 10:57 EVNT.46676267._002101.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 18:26:37 (12584): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 10:57 pandaJob.out
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas    975520 Oct 12 10:58 agis_schedconf.cvmfs.json
2025-10-12 18:26:37 (12584): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 10:58 pilot3
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas 195852341 Oct 12 15:24 HITS.46676269._052287.pool.root.1
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 15:25 pilot_heartbeat.json
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas      1049 Oct 12 15:25 memory_monitor_summary.json
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 15:25 agis_ddmendpoints.agis.ALL.json
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas    487764 Oct 12 15:25 log.46676269._052287.job.log.tgz.1
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas      7837 Oct 12 15:25 heartbeat.json
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas      4612 Oct 12 15:26 pilotlog.txt
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas   2080509 Oct 12 15:26 log.46676269._052287.job.log.1
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 15:26 output.list
2025-10-12 18:26:37 (12584): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 15:26 runtime_log
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas   2590720 Oct 12 15:26 result.tar.gz
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas       659 Oct 12 15:26 UxVMDmjjhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgYfNDmP0nB8m.diag
2025-10-12 18:26:37 (12584): Guest Log: -rw-r--r--. 1 atlas atlas      8640 Oct 12 15:26 runtime_log.err
2025-10-12 18:26:37 (12584): Guest Log: Looking for outputfile HITS.46676269._052287.pool.root.1
2025-10-12 18:26:37 (12584): Guest Log: HITS file was successfully produced
2025-10-12 18:26:37 (12584): Guest Log: -rw-------. 1 atlas atlas 195852341 Oct 12 15:24 /home/atlas/RunAtlas/HITS.46676269._052287.pool.root.1
2025-10-12 18:26:39 (12584): Guest Log: Successfully finished the ATLAS job!
2025-10-12 18:26:39 (12584): Guest Log: Copying the results back to the shared directory!
2025-10-12 18:26:39 (12584): Guest Log:  *** Contents of shared directory: ***
2025-10-12 18:26:39 (12584): Guest Log: total 411284
2025-10-12 18:26:39 (12584): Guest Log: -rwxrwxrwx. 1 root root 222103214 Oct 12 10:56 ATLAS.root_0
2025-10-12 18:26:39 (12584): Guest Log: -rwxrwxrwx. 1 root root 195852341 Oct 12 15:26 HITS.pool.root.1
2025-10-12 18:26:39 (12584): Guest Log: -rwxrwxrwx. 1 root root      8540 Oct 12 10:56 init_data.xml
2025-10-12 18:26:39 (12584): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 11 15:41 input.tar.gz
2025-10-12 18:26:39 (12584): Guest Log: -rwxrwxrwx. 1 root root   2590720 Oct 12 15:26 result.tar.gz
2025-10-12 18:26:39 (12584): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 15:41 start_atlas.sh
2025-10-12 18:26:39 (12584): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 18:26:39 (12584): VM Completion File Detected.
2025-10-12 18:26:39 (12584): Powering off VM.
2025-10-12 18:26:40 (12584): Successfully stopped VM.
2025-10-12 18:26:40 (12584): Deregistering VM. (boinc_ec213e3b5a4e2548, slot#4)
2025-10-12 18:26:40 (12584): Removing network bandwidth throttle group from VM.
2025-10-12 18:26:40 (12584): Removing VM from VirtualBox.
2025-10-12 18:26:46 (12584): called boinc_finish(0)

</stderr_txt>
]]>

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