Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:36:53 (1339422): wrapper (7.7.26015): starting
08:36:53 (1339422): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 08:36:53] Arguments: --nthreads 4
[2025-10-11 08:36:53] Threads: 4
[2025-10-11 08:36:53] Checking for CVMFS
[2025-10-11 08:36:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 08:36:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 08:36:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 08:36:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 08:36:53] 2.13.2.0 1257088 147 45692 151589 0 56 3192007 4096001 0 130560 0 134029 99.984 8032 1058 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 08:36:53] CVMFS is ok
[2025-10-11 08:36:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 08:36:53] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 08:36:53] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 08:36:53] Further information can be found at the LHC@home message board.
[2025-10-11 08:36:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 08:36:53] Checking for apptainer binary...
[2025-10-11 08:36:53] apptainer is not installed, using version from CVMFS
[2025-10-11 08:36:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 08:36:53] WALKTOTHESUNMINT
[2025-10-11 08:36:53] apptainer works
[2025-10-11 08:36:53] Set ATHENA_PROC_NUMBER=4
[2025-10-11 08:36:53] Set ATHENA_CORE_NUMBER=4
[2025-10-11 08:36:53] Starting ATLAS job with PandaID=6838290290
[2025-10-11 08:36:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 09:49:12]  *** The last 200 lines of the pilot log: ***
[2025-10-11 09:49:12]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-10-11 09:49:12]  is_altstaged=None
[2025-10-11 09:49:12]  is_tar=False
[2025-10-11 09:49:12]  lfn=log.46676269._054843.job.log.tgz.1
[2025-10-11 09:49:12]  mtime=0
[2025-10-11 09:49:12]  protocol_id=None
[2025-10-11 09:49:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 09:49:12]  replicas=None
[2025-10-11 09:49:12]  scope=mc23_13p6TeV
[2025-10-11 09:49:12]  status=None
[2025-10-11 09:49:12]  status_code=0
[2025-10-11 09:49:12]  storage_token=
[2025-10-11 09:49:12]  surl=/var/lib/boinc/slots/5/PanDA_Pilot-6838290290/log.46676269._054843.job.log.tgz.1
[2025-10-11 09:49:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/a0/log.46676269._054843.job.log.tgz.1
[2025-10-11 09:49:12]  workdir=None
[2025-10-11 09:49:12] ]
[2025-10-11 09:49:12] 2025-10-11 16:48:17,638 | INFO     | transferring file log.46676269._054843.job.log.tgz.1 from /var/lib/boinc/slots/5/PanDA_Pilot-6838290290/log.46676269._054843.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-11 09:49:12] 2025-10-11 16:48:17,638 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/5/PanDA_Pilot-6838290290/log.46676269._054843.job.log.tgz.1 /var/lib/boinc/slots/5/log.46676269._054843.job
[2025-10-11 09:49:12] 2025-10-11 16:48:17,650 | INFO     | adding to output.list: log.46676269._054843.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/a0/log.46676269._054843.job.log.tg
[2025-10-11 09:49:12] 2025-10-11 16:48:17,650 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 09:49:12] 2025-10-11 16:48:17,650 | INFO     | summary of transferred files:
[2025-10-11 09:49:12] 2025-10-11 16:48:17,650 | INFO     |  -- lfn=log.46676269._054843.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 09:49:12] 2025-10-11 16:48:17,650 | INFO     | stage-out finished correctly
[2025-10-11 09:49:12] 2025-10-11 16:48:18,330 | INFO     | time since job start (4278s) is within the limit (172800.0s)
[2025-10-11 09:49:12] 2025-10-11 16:48:19,497 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 09:49:12] 2025-10-11 16:48:19,587 | INFO     | job 6838290290 has state=finished
[2025-10-11 09:49:12] 2025-10-11 16:48:19,588 | INFO     | preparing for final server update for job 6838290290 in state='finished'
[2025-10-11 09:49:12] 2025-10-11 16:48:19,588 | INFO     | this job has now completed (state=finished)
[2025-10-11 09:49:12] 2025-10-11 16:48:19,588 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 09:49:12] 2025-10-11 16:48:19,588 | INFO     | log transfer has been attempted: DONE
[2025-10-11 09:49:12] 2025-10-11 16:48:19,588 | INFO     | job 6838290290 has finished - writing final server update
[2025-10-11 09:49:12] 2025-10-11 16:48:19,588 | INFO     | total number of processed events: 400 (read)
[2025-10-11 09:49:12] 2025-10-11 16:48:19,590 | INFO     | executing command: lscpu
[2025-10-11 09:49:12] 2025-10-11 16:48:19,608 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 09:49:12] 2025-10-11 16:48:19,813 | INFO     | monitor loop #328: job 0:6838290290 is in state 'finished'
[2025-10-11 09:49:12] 2025-10-11 16:48:19,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 09:49:12] 2025-10-11 16:48:20,336 | INFO     | time since job start (4280s) is within the limit (172800.0s)
[2025-10-11 09:49:12] 2025-10-11 16:48:21,382 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 09:49:12] 2025-10-11 16:48:21,383 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4425.27675
[2025-10-11 09:49:12] 2025-10-11 16:48:21,384 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6838290290/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 09:49:12] 2025-10-11 16:48:21,385 | INFO     | extracted standard info from prmon json
[2025-10-11 09:49:12] 2025-10-11 16:48:21,385 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 09:49:12] 2025-10-11 16:48:21,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 09:49:12] 2025-10-11 16:48:21,385 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 09:49:12] 2025-10-11 16:48:21,385 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 09:49:12] 2025-10-11 16:48:21,386 | INFO     | fitting pss+swap vs Time
[2025-10-11 09:49:12] 2025-10-11 16:48:21,386 | INFO     | sum of square deviations: 77515872.0
[2025-10-11 09:49:12] 2025-10-11 16:48:21,386 | INFO     | sum of deviations: -12050655103.0
[2025-10-11 09:49:12] 2025-10-11 16:48:21,386 | INFO     | mean x: 1760199233.0
[2025-10-11 09:49:12] 2025-10-11 16:48:21,386 | INFO     | mean y: 2570602.587301587
[2025-10-11 09:49:12] 2025-10-11 16:48:21,386 | INFO     | -- intersect: 273643998121.4332
[2025-10-11 09:49:12] 2025-10-11 16:48:21,386 | INFO     | intersect: 273643998121.4332
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | chi2: 0.11198003942578444
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | -- intersect: 273643998121.4332
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | current memory leak: -155.46 B/s (using 63 data points, chi2=0.11)
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | could have reported an average CPU frequency of 4549 MHz (6 samples)
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | ..............................
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . Timing measurements:
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . get job = 0 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . initial setup = 3 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . payload setup = 2 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . stage-in = 0 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . payload execution = 4259 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . stage-out = 0 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | . log creation = 0 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,387 | INFO     | ..............................
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | 
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | job summary report
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | --------------------------------------------------
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | PanDA job id: 6838290290
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | task id: 46676269
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | errors: (none)
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | pilot state: finished 
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | transexitcode: 0
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | exeerrorcode: 0
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | exeerrordiag: 
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | exitcode: 0
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | exitmsg: OK
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | cpuconsumptiontime: 16379 s
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | nevents: 400
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | neventsw: 0
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | pid: 1349771
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | pgrp: 1349771
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | corecount: 4
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | event service: False
[2025-10-11 09:49:12] 2025-10-11 16:48:21,425 | INFO     | sizes: {0: 2348686, 1: 2348885, 2: 2349147, 11: 2349175, 4264: 2375315, 4265: 2384313, 4267: 2384497, 4269: 2384691}
[2025-10-11 09:49:12] 2025-10-11 16:48:21,426 | INFO     | --------------------------------------------------
[2025-10-11 09:49:12] 2025-10-11 16:48:21,426 | INFO     | 
[2025-10-11 09:49:12] 2025-10-11 16:48:21,426 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 09:49:12] 2025-10-11 16:48:21,438 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,438 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 09:49:12] 2025-10-11 16:48:21,438 | INFO     | job 6838290290 has completed (purged errors)
[2025-10-11 09:49:12] 2025-10-11 16:48:21,438 | INFO     | overall cleanup function is called
[2025-10-11 09:49:12] 2025-10-11 16:48:22,444 | INFO     | --- collectZombieJob: --- 10, [1349771]
[2025-10-11 09:49:12] 2025-10-11 16:48:22,444 | INFO     | zombie collector waiting for pid 1349771
[2025-10-11 09:49:12] 2025-10-11 16:48:22,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 09:49:12] 2025-10-11 16:48:22,444 | INFO     | collected zombie processes
[2025-10-11 09:49:12] 2025-10-11 16:48:22,444 | INFO     | will attempt to kill all subprocesses of pid=1349771
[2025-10-11 09:49:12] 2025-10-11 16:48:22,496 | INFO     | process IDs to be killed: [1349771] (in reverse order)
[2025-10-11 09:49:12] 2025-10-11 16:48:22,528 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 09:49:12] 2025-10-11 16:48:22,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 09:49:12] 2025-10-11 16:48:22,530 | INFO     | did not find any defunct processes belonging to 1349771
[2025-10-11 09:49:12] 2025-10-11 16:48:22,531 | INFO     | did not find any defunct processes belonging to 1349771
[2025-10-11 09:49:12] 2025-10-11 16:48:22,531 | INFO     | ready for new job
[2025-10-11 09:49:12] 2025-10-11 16:48:22,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 09:49:12] 2025-10-11 16:48:22,531 | INFO     | ***************************************
[2025-10-11 09:49:12] 2025-10-11 16:48:22,531 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 09:49:12] 2025-10-11 16:48:22,531 | INFO     | ***************************************
[2025-10-11 09:49:12] 2025-10-11 16:48:22,531 | INFO     | 
[2025-10-11 09:49:12] 2025-10-11 16:48:22,532 | INFO     | architecture information:
[2025-10-11 09:49:12] 2025-10-11 16:48:22,532 | INFO     | executing command: cat /etc/os-release
[2025-10-11 09:49:12] 2025-10-11 16:48:22,539 | INFO     | cat /etc/os-release:
[2025-10-11 09:49:12] NAME="CentOS Linux"
[2025-10-11 09:49:12] VERSION="7 (Core)"
[2025-10-11 09:49:12] ID="centos"
[2025-10-11 09:49:12] ID_LIKE="rhel fedora"
[2025-10-11 09:49:12] VERSION_ID="7"
[2025-10-11 09:49:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 09:49:12] ANSI_COLOR="0;31"
[2025-10-11 09:49:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 09:49:12] HOME_URL="https://www.centos.org/"
[2025-10-11 09:49:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 09:49:12] 
[2025-10-11 09:49:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 09:49:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 09:49:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 09:49:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 09:49:12] 
[2025-10-11 09:49:12] 2025-10-11 16:48:22,539 | INFO     | ***************************************
[2025-10-11 09:49:12] 2025-10-11 16:48:23,041 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-10-11 09:49:12] 2025-10-11 16:48:23,050 | INFO     | sufficient remaining disk space (707816062976 B)
[2025-10-11 09:49:12] 2025-10-11 16:48:23,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 09:49:12] 2025-10-11 16:48:23,050 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 09:49:12] 2025-10-11 16:48:23,050 | INFO     | update_server=False
[2025-10-11 09:49:12] 2025-10-11 16:48:23,050 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 09:49:12] 2025-10-11 16:48:23,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:49:12] 2025-10-11 16:48:23,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 09:49:12] 2025-10-11 16:48:23,322 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:49:12] 2025-10-11 16:48:23,322 | INFO     | aborting loop
[2025-10-11 09:49:12] 2025-10-11 16:48:23,438 | INFO     | all job control threads have been joined
[2025-10-11 09:49:12] 2025-10-11 16:48:24,055 | INFO     | [job] queue monitor thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:24,056 | INFO     | [job] retrieve thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:24,124 | INFO     | [data] copytool_in thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:24,151 | INFO     | all data control threads have been joined
[2025-10-11 09:49:12] 2025-10-11 16:48:24,233 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:24,326 | INFO     | [job] job monitor thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:24,422 | INFO     | all payload control threads have been joined
[2025-10-11 09:49:12] 2025-10-11 16:48:24,443 | INFO     | [job] control thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:24,454 | INFO     | [payload] validate_post thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,156 | INFO     | [data] control thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,194 | INFO     | [data] copytool_out thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,238 | INFO     | [payload] failed_post thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,287 | INFO     | [job] validate thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,410 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,418 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,427 | INFO     | [payload] control thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,525 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:25,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 09:49:12] 2025-10-11 16:48:29,537 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 09:49:12] 2025-10-11 16:48:53,468 | INFO     | PID=1343198 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 09:49:12] 2025-10-11 16:48:53,468 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 09:49:12] 2025-10-11 16:48:53,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 09:49:12] 2025-10-11 16:48:53,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 09:49:12] 2025-10-11 16:49:06,187 | INFO     | [monitor] cgroup control has ended
[2025-10-11 09:49:12] 2025-10-11 16:49:07,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123724431796032)>', '<ExcThread(monitor, started 123723898148608)>']
[2025-10-11 09:49:12] 2025-10-11 16:49:07,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 09:49:12] 2025-10-11 16:49:07,537 | INFO     | [monitor] control thread has ended
[2025-10-11 09:49:12] 2025-10-11 16:49:12,448 | INFO     | all workflow threads have been joined
[2025-10-11 09:49:12] 2025-10-11 16:49:12,448 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 09:49:12] 2025-10-11 16:49:12,449 | INFO     | traces error code: 0
[2025-10-11 09:49:12] 2025-10-11 16:49:12,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 09:49:12] 2025-10-11 16:49:12,504 [wrapper] ==== pilot stdout END ====
[2025-10-11 09:49:12] 2025-10-11 16:49:12,505 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 09:49:12] 2025-10-11 16:49:12,506 [wrapper] pilotpid: 1343198
[2025-10-11 09:49:12] 2025-10-11 16:49:12,507 [wrapper] Pilot exit status: 0
[2025-10-11 09:49:12] 2025-10-11 16:49:12,511 [wrapper] pandaids: 6838290290
[2025-10-11 09:49:12] 2025-10-11 16:49:12,529 [wrapper] cleanup supervisor_pilot 1371364 1343199
[2025-10-11 09:49:12] 2025-10-11 16:49:12,531 [wrapper] Test setup, not cleaning
[2025-10-11 09:49:12] 2025-10-11 16:49:12,532 [wrapper] apfmon messages muted
[2025-10-11 09:49:12] 2025-10-11 16:49:12,533 [wrapper] ==== wrapper stdout END ====
[2025-10-11 09:49:12] 2025-10-11 16:49:12,534 [wrapper] ==== wrapper stderr END ====
[2025-10-11 09:49:12]  *** Error codes and diagnostics ***
[2025-10-11 09:49:12]     "exeErrorCode": 0,
[2025-10-11 09:49:12]     "exeErrorDiag": "",
[2025-10-11 09:49:12]     "pilotErrorCode": 0,
[2025-10-11 09:49:12]     "pilotErrorDiag": "",
[2025-10-11 09:49:12]  *** Listing of results directory ***
[2025-10-11 09:49:12] total 414780
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc    557409 Oct 11 02:03 pilot3.tar.gz
[2025-10-11 09:49:12] -rwx------ 1 boinc boinc     36292 Oct 11 02:03 runpilot2-wrapper.sh
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc      5112 Oct 11 02:03 queuedata.json
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc       100 Oct 11 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 09:49:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 08:36 run_atlas
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc       105 Oct 11 08:36 job.xml
[2025-10-11 09:49:12] -rw-r--r-- 2 boinc boinc 221274376 Oct 11 08:36 EVNT.46676267._002199.pool.root.1
[2025-10-11 09:49:12] -rw-r--r-- 2 boinc boinc    569673 Oct 11 08:36 input.tar.gz
[2025-10-11 09:49:12] -rw-r--r-- 2 boinc boinc     15120 Oct 11 08:36 start_atlas.sh
[2025-10-11 09:49:12] drwxrwx--x 2 boinc boinc      4096 Oct 11 08:36 shared
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc         0 Oct 11 08:36 boinc_setup_complete
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc      9041 Oct 11 08:36 init_data.xml
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc         0 Oct 11 08:36 boinc_lockfile
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc      2550 Oct 11 08:36 pandaJob.out
[2025-10-11 09:49:12] -rw------- 1 boinc boinc    975512 Oct 11 08:36 agis_schedconf.cvmfs.json
[2025-10-11 09:49:12] -rw------- 1 boinc boinc   1560580 Oct 11 08:36 agis_ddmendpoints.agis.ALL.json
[2025-10-11 09:49:12] drwx------ 5 boinc boinc      4096 Oct 11 08:37 pilot3
[2025-10-11 09:49:12] -rw------- 1 boinc boinc 197749650 Oct 11 09:47 HITS.46676269._054843.pool.root.1
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc       529 Oct 11 09:48 boinc_task_state.xml
[2025-10-11 09:49:12] -rw------- 1 boinc boinc      1019 Oct 11 09:48 memory_monitor_summary.json
[2025-10-11 09:49:12] -rw------- 1 boinc boinc    264260 Oct 11 09:48 log.46676269._054843.job.log.tgz.1
[2025-10-11 09:49:12] -rw------- 1 boinc boinc      7782 Oct 11 09:48 heartbeat.json
[2025-10-11 09:49:12] -rw------- 1 boinc boinc        95 Oct 11 09:48 pilot_heartbeat.json
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc      8192 Oct 11 09:49 boinc_mmap_file
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc        27 Oct 11 09:49 wrapper_checkpoint.txt
[2025-10-11 09:49:12] -rw------- 1 boinc boinc      4749 Oct 11 09:49 pilotlog.txt
[2025-10-11 09:49:12] -rw------- 1 boinc boinc    633419 Oct 11 09:49 log.46676269._054843.job.log.1
[2025-10-11 09:49:12] -rw------- 1 boinc boinc       357 Oct 11 09:49 output.list
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc       620 Oct 11 09:49 runtime_log
[2025-10-11 09:49:12] -rw------- 1 boinc boinc    921600 Oct 11 09:49 result.tar.gz
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc      8693 Oct 11 09:49 runtime_log.err
[2025-10-11 09:49:12] -rw------- 1 boinc boinc       647 Oct 11 09:49 dxNMDmHhkR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcbRMDmx3j3Ym.diag
[2025-10-11 09:49:12] -rw-r--r-- 1 boinc boinc     21509 Oct 11 09:49 stderr.txt
[2025-10-11 09:49:12] HITS file was successfully produced:
[2025-10-11 09:49:12] -rw------- 1 boinc boinc 197749650 Oct 11 09:47 shared/HITS.pool.root.1
[2025-10-11 09:49:12]  *** Contents of shared directory: ***
[2025-10-11 09:49:12] total 410692
[2025-10-11 09:49:12] -rw-r--r-- 2 boinc boinc 221274376 Oct 11 08:36 ATLAS.root_0
[2025-10-11 09:49:12] -rw-r--r-- 2 boinc boinc    569673 Oct 11 08:36 input.tar.gz
[2025-10-11 09:49:12] -rw-r--r-- 2 boinc boinc     15120 Oct 11 08:36 start_atlas.sh
[2025-10-11 09:49:12] -rw------- 1 boinc boinc 197749650 Oct 11 09:47 HITS.pool.root.1
[2025-10-11 09:49:12] -rw------- 1 boinc boinc    921600 Oct 11 09:49 result.tar.gz
09:49:14 (1339422): run_atlas exited; CPU time 16407.047772
09:49:14 (1339422): called boinc_finish(0)

</stderr_txt>
]]>

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