Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
15:06:28 (3102341): wrapper (7.7.26015): starting
15:06:28 (3102341): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 15:06:28] Arguments: --nthreads 12
[2025-10-11 15:06:28] Threads: 12
[2025-10-11 15:06:28] Checking for CVMFS
[2025-10-11 15:06:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 15:06:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 15:06:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 15:06:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 15:06:29] 2.13.2.0 3843265 3422 58204 151594 3 188 3249329 6144000 3668 130560 0 20349182 99.998 236293 472 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 15:06:29] CVMFS is ok
[2025-10-11 15:06:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 15:06:29] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 15:06:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 15:06:29] Further information can be found at the LHC@home message board.
[2025-10-11 15:06:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 15:06:29] Checking for apptainer binary...
[2025-10-11 15:06:29] apptainer is not installed, using version from CVMFS
[2025-10-11 15:06:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 15:06:30] XeonFire
[2025-10-11 15:06:30] apptainer works
[2025-10-11 15:06:30] Set ATHENA_PROC_NUMBER=12
[2025-10-11 15:06:30] Set ATHENA_CORE_NUMBER=12
[2025-10-11 15:06:30] Starting ATLAS job with PandaID=6838116980
[2025-10-11 15:06:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 16:06:06]  *** The last 200 lines of the pilot log: ***
[2025-10-11 16:06:06] 2025-10-11 21:05:11,118 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6838116980/log.46676269._051710.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.466762
[2025-10-11 16:06:06] 2025-10-11 21:05:11,138 | INFO     | adding to output.list: log.46676269._051710.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/17/log.46676269._051710.job.log.tg
[2025-10-11 16:06:06] 2025-10-11 21:05:11,139 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 16:06:06] 2025-10-11 21:05:11,139 | INFO     | summary of transferred files:
[2025-10-11 16:06:06] 2025-10-11 21:05:11,139 | INFO     |  -- lfn=log.46676269._051710.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 16:06:06] 2025-10-11 21:05:11,139 | INFO     | stage-out finished correctly
[2025-10-11 16:06:06] 2025-10-11 21:05:11,991 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 16:06:06] 2025-10-11 21:05:12,055 | INFO     | time since job start (3497s) is within the limit (172800.0s)
[2025-10-11 16:06:06] 2025-10-11 21:05:12,835 | INFO     | monitor loop #258: job 0:6838116980 is in state 'finished'
[2025-10-11 16:06:06] 2025-10-11 21:05:12,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:06:06] 2025-10-11 21:05:14,070 | INFO     | time since job start (3499s) is within the limit (172800.0s)
[2025-10-11 16:06:06] 2025-10-11 21:05:14,852 | INFO     | job 6838116980 has state=finished
[2025-10-11 16:06:06] 2025-10-11 21:05:14,852 | INFO     | preparing for final server update for job 6838116980 in state='finished'
[2025-10-11 16:06:06] 2025-10-11 21:05:14,853 | INFO     | this job has now completed (state=finished)
[2025-10-11 16:06:06] 2025-10-11 21:05:14,853 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 16:06:06] 2025-10-11 21:05:14,853 | INFO     | log transfer has been attempted: DONE
[2025-10-11 16:06:06] 2025-10-11 21:05:14,853 | INFO     | job 6838116980 has finished - writing final server update
[2025-10-11 16:06:06] 2025-10-11 21:05:14,854 | INFO     | total number of processed events: 400 (read)
[2025-10-11 16:06:06] 2025-10-11 21:05:14,855 | INFO     | executing command: lscpu
[2025-10-11 16:06:06] 2025-10-11 21:05:14,927 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 16:06:06] 2025-10-11 21:05:15,338 | INFO     | monitor loop #259: job 0:6838116980 is in state 'finished'
[2025-10-11 16:06:06] 2025-10-11 21:05:15,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:06:06] 2025-10-11 21:05:15,558 | INFO     | PID=3106392 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 16:06:06] 2025-10-11 21:05:15,558 | INFO     | .. there are 5 such processes running
[2025-10-11 16:06:06] 2025-10-11 21:05:16,559 | INFO     | time since job start (3501s) is within the limit (172800.0s)
[2025-10-11 16:06:06] 2025-10-11 21:05:17,842 | INFO     | monitor loop #260: job 0:6838116980 is in state 'finished'
[2025-10-11 16:06:06] 2025-10-11 21:05:17,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:06:06] 2025-10-11 21:05:18,565 | INFO     | time since job start (3503s) is within the limit (172800.0s)
[2025-10-11 16:06:06] 2025-10-11 21:05:20,345 | INFO     | monitor loop #261: job 0:6838116980 is in state 'finished'
[2025-10-11 16:06:06] 2025-10-11 21:05:20,346 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:06:06] 2025-10-11 21:05:20,569 | INFO     | time since job start (3505s) is within the limit (172800.0s)
[2025-10-11 16:06:06] 2025-10-11 21:05:22,575 | INFO     | time since job start (3507s) is within the limit (172800.0s)
[2025-10-11 16:06:06] 2025-10-11 21:05:22,849 | INFO     | monitor loop #262: job 0:6838116980 is in state 'finished'
[2025-10-11 16:06:06] 2025-10-11 21:05:22,849 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,429 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 16:06:06] 2025-10-11 21:05:24,444 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2323.518738636363
[2025-10-11 16:06:06] 2025-10-11 21:05:24,460 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6838116980/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,461 | INFO     | extracted standard info from prmon json
[2025-10-11 16:06:06] 2025-10-11 21:05:24,461 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 16:06:06] 2025-10-11 21:05:24,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 16:06:06] 2025-10-11 21:05:24,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 16:06:06] 2025-10-11 21:05:24,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 16:06:06] 2025-10-11 21:05:24,463 | INFO     | fitting pss+swap vs Time
[2025-10-11 16:06:06] 2025-10-11 21:05:24,463 | INFO     | sum of square deviations: 38744912.5
[2025-10-11 16:06:06] 2025-10-11 21:05:24,464 | INFO     | sum of deviations: 3540202954.0
[2025-10-11 16:06:06] 2025-10-11 21:05:24,464 | INFO     | mean x: 1760215042.5
[2025-10-11 16:06:06] 2025-10-11 21:05:24,464 | INFO     | mean y: 2641524.16
[2025-10-11 16:06:06] 2025-10-11 21:05:24,464 | INFO     | -- intersect: -160831854956.73242
[2025-10-11 16:06:06] 2025-10-11 21:05:24,464 | INFO     | intersect: -160831854956.73242
[2025-10-11 16:06:06] 2025-10-11 21:05:24,464 | INFO     | chi2: 0.17561190807898078
[2025-10-11 16:06:06] 2025-10-11 21:05:24,465 | INFO     | -- intersect: -160831854956.73242
[2025-10-11 16:06:06] 2025-10-11 21:05:24,465 | INFO     | current memory leak: 91.37 B/s (using 50 data points, chi2=0.18)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,465 | INFO     | could have reported an average CPU frequency of 2365 MHz (5 samples)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,465 | INFO     | ..............................
[2025-10-11 16:06:06] 2025-10-11 21:05:24,465 | INFO     | . Timing measurements:
[2025-10-11 16:06:06] 2025-10-11 21:05:24,465 | INFO     | . get job = 0 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,466 | INFO     | . initial setup = 15 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,466 | INFO     | . payload setup = 6 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,466 | INFO     | . stage-in = 0 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,466 | INFO     | . payload execution = 3467 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,466 | INFO     | . stage-out = 0 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,466 | INFO     | . log creation = 0 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,466 | INFO     | ..............................
[2025-10-11 16:06:06] 2025-10-11 21:05:24,571 | INFO     | 
[2025-10-11 16:06:06] 2025-10-11 21:05:24,572 | INFO     | job summary report
[2025-10-11 16:06:06] 2025-10-11 21:05:24,572 | INFO     | --------------------------------------------------
[2025-10-11 16:06:06] 2025-10-11 21:05:24,572 | INFO     | PanDA job id: 6838116980
[2025-10-11 16:06:06] 2025-10-11 21:05:24,572 | INFO     | task id: 46676269
[2025-10-11 16:06:06] 2025-10-11 21:05:24,572 | INFO     | errors: (none)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,572 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 16:06:06] 2025-10-11 21:05:24,572 | INFO     | pilot state: finished 
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | transexitcode: 0
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | exeerrorcode: 0
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | exeerrordiag: 
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | exitcode: 0
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | exitmsg: OK
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | cpuconsumptiontime: 34687 s
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | nevents: 400
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | neventsw: 0
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | pid: 3113419
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | pgrp: 3113419
[2025-10-11 16:06:06] 2025-10-11 21:05:24,573 | INFO     | corecount: 12
[2025-10-11 16:06:06] 2025-10-11 21:05:24,574 | INFO     | event service: False
[2025-10-11 16:06:06] 2025-10-11 21:05:24,574 | INFO     | sizes: {0: 2348693, 1: 2348892, 5: 2349154, 11: 2349210, 3477: 2374702, 3478: 2374701, 3479: 2383897, 3480: 2383953, 3493: 2384179}
[2025-10-11 16:06:06] 2025-10-11 21:05:24,574 | INFO     | --------------------------------------------------
[2025-10-11 16:06:06] 2025-10-11 21:05:24,574 | INFO     | 
[2025-10-11 16:06:06] 2025-10-11 21:05:24,574 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-10-11 16:06:06] 2025-10-11 21:05:24,581 | INFO     | time since job start (3509s) is within the limit (172800.0s)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 16:06:06] 2025-10-11 21:05:24,600 | INFO     | job 6838116980 has completed (purged errors)
[2025-10-11 16:06:06] 2025-10-11 21:05:24,601 | INFO     | overall cleanup function is called
[2025-10-11 16:06:06] 2025-10-11 21:05:25,609 | INFO     | --- collectZombieJob: --- 10, [3113419]
[2025-10-11 16:06:06] 2025-10-11 21:05:25,609 | INFO     | zombie collector waiting for pid 3113419
[2025-10-11 16:06:06] 2025-10-11 21:05:25,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 16:06:06] 2025-10-11 21:05:25,610 | INFO     | collected zombie processes
[2025-10-11 16:06:06] 2025-10-11 21:05:25,610 | INFO     | will attempt to kill all subprocesses of pid=3113419
[2025-10-11 16:06:06] 2025-10-11 21:05:26,029 | INFO     | process IDs to be killed: [3113419] (in reverse order)
[2025-10-11 16:06:06] 2025-10-11 21:05:26,161 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 16:06:06] 2025-10-11 21:05:26,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 16:06:06] 2025-10-11 21:05:26,171 | INFO     | did not find any defunct processes belonging to 3113419
[2025-10-11 16:06:06] 2025-10-11 21:05:26,180 | INFO     | did not find any defunct processes belonging to 3113419
[2025-10-11 16:06:06] 2025-10-11 21:05:26,180 | INFO     | ready for new job
[2025-10-11 16:06:06] 2025-10-11 21:05:26,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 16:06:06] 2025-10-11 21:05:26,182 | INFO     | ***************************************
[2025-10-11 16:06:06] 2025-10-11 21:05:26,182 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 16:06:06] 2025-10-11 21:05:26,182 | INFO     | ***************************************
[2025-10-11 16:06:06] 2025-10-11 21:05:26,182 | INFO     | 
[2025-10-11 16:06:06] 2025-10-11 21:05:26,187 | INFO     | architecture information:
[2025-10-11 16:06:06] 2025-10-11 21:05:26,188 | INFO     | executing command: cat /etc/os-release
[2025-10-11 16:06:06] 2025-10-11 21:05:26,204 | INFO     | cat /etc/os-release:
[2025-10-11 16:06:06] NAME="CentOS Linux"
[2025-10-11 16:06:06] VERSION="7 (Core)"
[2025-10-11 16:06:06] ID="centos"
[2025-10-11 16:06:06] ID_LIKE="rhel fedora"
[2025-10-11 16:06:06] VERSION_ID="7"
[2025-10-11 16:06:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 16:06:06] ANSI_COLOR="0;31"
[2025-10-11 16:06:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 16:06:06] HOME_URL="https://www.centos.org/"
[2025-10-11 16:06:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 16:06:06] 
[2025-10-11 16:06:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 16:06:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 16:06:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 16:06:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 16:06:06] 
[2025-10-11 16:06:06] 2025-10-11 21:05:26,204 | INFO     | ***************************************
[2025-10-11 16:06:06] 2025-10-11 21:05:26,707 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-11 16:06:06] 2025-10-11 21:05:26,725 | INFO     | sufficient remaining disk space (1815507632128 B)
[2025-10-11 16:06:06] 2025-10-11 21:05:26,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 16:06:06] 2025-10-11 21:05:26,726 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 16:06:06] 2025-10-11 21:05:26,726 | INFO     | update_server=False
[2025-10-11 16:06:06] 2025-10-11 21:05:26,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 16:06:06] 2025-10-11 21:05:26,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:06:06] 2025-10-11 21:05:26,727 | INFO     | aborting loop
[2025-10-11 16:06:06] 2025-10-11 21:05:26,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 16:06:06] 2025-10-11 21:05:26,879 | INFO     | all data control threads have been joined
[2025-10-11 16:06:06] 2025-10-11 21:05:27,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 16:06:06] 2025-10-11 21:05:27,732 | INFO     | [job] retrieve thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:27,732 | INFO     | [job] job monitor thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:27,884 | INFO     | [data] control thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:27,919 | INFO     | all job control threads have been joined
[2025-10-11 16:06:06] 2025-10-11 21:05:28,059 | INFO     | all payload control threads have been joined
[2025-10-11 16:06:06] 2025-10-11 21:05:28,170 | INFO     | [payload] validate_post thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,351 | INFO     | [job] validate thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,448 | INFO     | [payload] failed_post thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,463 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,659 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,762 | INFO     | [data] copytool_out thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,858 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,865 | INFO     | [data] copytool_in thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:28,924 | INFO     | [job] control thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:29,065 | INFO     | [payload] control thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:29,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:06:06] 2025-10-11 21:05:30,588 | INFO     | [job] queue monitor thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:31,110 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:37,481 | INFO     | job.realtimelogging is not enabled
[2025-10-11 16:06:06] 2025-10-11 21:05:38,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 16:06:06] 2025-10-11 21:05:58,160 | INFO     | PID=3106392 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 16:06:06] 2025-10-11 21:05:58,161 | INFO     | .. there are 5 such processes running
[2025-10-11 16:06:06] 2025-10-11 21:05:58,161 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 16:06:06] 2025-10-11 21:05:58,161 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 16:06:06] 2025-10-11 21:05:58,161 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 16:06:06] 2025-10-11 21:06:00,344 | INFO     | [monitor] cgroup control has ended
[2025-10-11 16:06:06] 2025-10-11 21:06:01,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131414055941952)>', '<ExcThread(monitor, started 131413357610752)>']
[2025-10-11 16:06:06] 2025-10-11 21:06:02,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 16:06:06] 2025-10-11 21:06:02,178 | INFO     | [monitor] control thread has ended
[2025-10-11 16:06:06] 2025-10-11 21:06:06,476 | INFO     | all workflow threads have been joined
[2025-10-11 16:06:06] 2025-10-11 21:06:06,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 16:06:06] 2025-10-11 21:06:06,476 | INFO     | traces error code: 0
[2025-10-11 16:06:06] 2025-10-11 21:06:06,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 16:06:06] 2025-10-11 21:06:06,583 [wrapper] ==== pilot stdout END ====
[2025-10-11 16:06:06] 2025-10-11 21:06:06,586 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 16:06:06] 2025-10-11 21:06:06,589 [wrapper] pilotpid: 3106392
[2025-10-11 16:06:06] 2025-10-11 21:06:06,592 [wrapper] Pilot exit status: 0
[2025-10-11 16:06:06] 2025-10-11 21:06:06,603 [wrapper] pandaids: 6838116980
[2025-10-11 16:06:06] 2025-10-11 21:06:06,676 [wrapper] cleanup supervisor_pilot 3202934 3106393
[2025-10-11 16:06:06] 2025-10-11 21:06:06,680 [wrapper] Test setup, not cleaning
[2025-10-11 16:06:06] 2025-10-11 21:06:06,683 [wrapper] apfmon messages muted
[2025-10-11 16:06:06] 2025-10-11 21:06:06,686 [wrapper] ==== wrapper stdout END ====
[2025-10-11 16:06:06] 2025-10-11 21:06:06,689 [wrapper] ==== wrapper stderr END ====
[2025-10-11 16:06:06]  *** Error codes and diagnostics ***
[2025-10-11 16:06:06]     "exeErrorCode": 0,
[2025-10-11 16:06:06]     "exeErrorDiag": "",
[2025-10-11 16:06:06]     "pilotErrorCode": 0,
[2025-10-11 16:06:06]     "pilotErrorDiag": "",
[2025-10-11 16:06:06]  *** Listing of results directory ***
[2025-10-11 16:06:06] total 408300
[2025-10-11 16:06:06] -rw-r--r-- 1 mark mark    557409 Oct 11 00:13 pilot3.tar.gz
[2025-10-11 16:06:06] -rwx------ 1 mark mark     36292 Oct 11 00:16 runpilot2-wrapper.sh
[2025-10-11 16:06:06] -rw-r--r-- 1 mark mark      5112 Oct 11 00:16 queuedata.json
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark       100 Oct 11 15:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 16:06:06] -rwxr-xr-x 1 mark mark      7986 Oct 11 15:06 run_atlas
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark       105 Oct 11 15:06 job.xml
[2025-10-11 16:06:06] -rw-r--r-- 2 mark mark 219175960 Oct 11 15:06 EVNT.46676267._002078.pool.root.1
[2025-10-11 16:06:06] -rw-r--r-- 2 mark mark     15120 Oct 11 15:06 start_atlas.sh
[2025-10-11 16:06:06] drwxrwx--x 2 mark mark      4096 Oct 11 15:06 shared
[2025-10-11 16:06:06] -rw-r--r-- 2 mark mark    569678 Oct 11 15:06 input.tar.gz
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark      9341 Oct 11 15:06 init_data.xml
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark         0 Oct 11 15:06 boinc_setup_complete
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark         0 Oct 11 15:06 boinc_lockfile
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark      2550 Oct 11 15:06 pandaJob.out
[2025-10-11 16:06:06] -rw------- 1 mark mark    975512 Oct 11 15:06 agis_schedconf.cvmfs.json
[2025-10-11 16:06:06] -rw------- 1 mark mark   1560580 Oct 11 15:06 agis_ddmendpoints.agis.ALL.json
[2025-10-11 16:06:06] drwx------ 5 mark mark      4096 Oct 11 15:06 pilot3
[2025-10-11 16:06:06] -rw------- 1 mark mark 193210971 Oct 11 16:04 HITS.46676269._051710.pool.root.1
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark       529 Oct 11 16:04 boinc_task_state.xml
[2025-10-11 16:06:06] -rw------- 1 mark mark        95 Oct 11 16:05 pilot_heartbeat.json
[2025-10-11 16:06:06] -rw------- 1 mark mark      1033 Oct 11 16:05 memory_monitor_summary.json
[2025-10-11 16:06:06] -rw------- 1 mark mark    376086 Oct 11 16:05 log.46676269._051710.job.log.tgz.1
[2025-10-11 16:06:06] -rw------- 1 mark mark      7786 Oct 11 16:05 heartbeat.json
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark      8192 Oct 11 16:05 boinc_mmap_file
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark        27 Oct 11 16:05 wrapper_checkpoint.txt
[2025-10-11 16:06:06] -rw------- 1 mark mark      4904 Oct 11 16:06 pilotlog.txt
[2025-10-11 16:06:06] -rw------- 1 mark mark    526684 Oct 11 16:06 log.46676269._051710.job.log.1
[2025-10-11 16:06:06] -rw------- 1 mark mark       357 Oct 11 16:06 output.list
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark       620 Oct 11 16:06 runtime_log
[2025-10-11 16:06:06] -rw------- 1 mark mark    921600 Oct 11 16:06 result.tar.gz
[2025-10-11 16:06:06] -rw------- 1 mark mark       644 Oct 11 16:06 vFMODmt8gR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmoHRMDmwpKOwn.diag
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark      8759 Oct 11 16:06 runtime_log.err
[2025-10-11 16:06:06] -rw-rw-r-- 1 mark mark     22549 Oct 11 16:06 stderr.txt
[2025-10-11 16:06:06] HITS file was successfully produced:
[2025-10-11 16:06:06] -rw------- 1 mark mark 193210971 Oct 11 16:04 shared/HITS.pool.root.1
[2025-10-11 16:06:06]  *** Contents of shared directory: ***
[2025-10-11 16:06:06] total 404208
[2025-10-11 16:06:06] -rw-r--r-- 2 mark mark 219175960 Oct 11 15:06 ATLAS.root_0
[2025-10-11 16:06:06] -rw-r--r-- 2 mark mark     15120 Oct 11 15:06 start_atlas.sh
[2025-10-11 16:06:06] -rw-r--r-- 2 mark mark    569678 Oct 11 15:06 input.tar.gz
[2025-10-11 16:06:06] -rw------- 1 mark mark 193210971 Oct 11 16:04 HITS.pool.root.1
[2025-10-11 16:06:06] -rw------- 1 mark mark    921600 Oct 11 16:06 result.tar.gz
16:06:08 (3102341): run_atlas exited; CPU time 34828.267364
16:06:08 (3102341): called boinc_finish(0)

</stderr_txt>
]]>

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