Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:52:30 (161567): wrapper (7.7.26015): starting
12:52:30 (161567): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 12:52:30] Arguments: --nthreads 8
[2025-10-11 12:52:30] Threads: 8
[2025-10-11 12:52:30] Checking for CVMFS
[2025-10-11 12:52:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:52:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:52:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:52:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:52:53] 2.13.2.0 2533812 128066 308608 151590 2 486 31742710 32935937 45139 16776704 0 365320735 99.694 277358571 19922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 12:52:53] CVMFS is ok
[2025-10-11 12:52:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:52:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:52:53] Further information can be found at the LHC@home message board.
[2025-10-11 12:52:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:52:53] Checking for apptainer binary...
[2025-10-11 12:52:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:52:53] Running /usr/bin/apptainer --version
[2025-10-11 12:52:53] apptainer version 1.4.3-1.el9
[2025-10-11 12:52:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:52:54] c6-12-29-3.aglt2.org
[2025-10-11 12:52:54] apptainer works
[2025-10-11 12:52:54] Set ATHENA_PROC_NUMBER=8
[2025-10-11 12:52:54] Set ATHENA_CORE_NUMBER=8
[2025-10-11 12:52:54] Starting ATLAS job with PandaID=6838118354
[2025-10-11 12:52:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:54:51]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:54:51] 2025-10-11 22:53:35,459 | INFO     | mean x: 1760212477.3703704
[2025-10-11 18:54:51] 2025-10-11 22:53:35,459 | INFO     | mean y: 2068657.0142450142
[2025-10-11 18:54:51] 2025-10-11 22:53:35,460 | INFO     | -- intersect: -12207054396.109776
[2025-10-11 18:54:51] 2025-10-11 22:53:35,460 | INFO     | intersect: -12207054396.109776
[2025-10-11 18:54:51] 2025-10-11 22:53:35,473 | INFO     | chi2: 4.177749191850824
[2025-10-11 18:54:51] 2025-10-11 22:53:35,474 | INFO     | sum of square deviations: 12844497711.147459
[2025-10-11 18:54:51] 2025-10-11 22:53:35,479 | INFO     | sum of deviations: 132199768692.27176
[2025-10-11 18:54:51] 2025-10-11 22:53:35,480 | INFO     | mean x: 1760212324.8699422
[2025-10-11 18:54:51] 2025-10-11 22:53:35,480 | INFO     | mean y: 2079149.583815029
[2025-10-11 18:54:51] 2025-10-11 22:53:35,480 | INFO     | -- intersect: -18114601426.810955
[2025-10-11 18:54:51] 2025-10-11 22:53:35,480 | INFO     | intersect: -18114601426.810955
[2025-10-11 18:54:51] 2025-10-11 22:53:35,481 | INFO     | chi2: 2.6206408792468845
[2025-10-11 18:54:51] 2025-10-11 22:53:35,481 | INFO     | current chi2=2.6206408792468845 (change=37.27146463558072 %)
[2025-10-11 18:54:51] 2025-10-11 22:53:35,481 | INFO     | sum of square deviations: 12295674701.442787
[2025-10-11 18:54:51] 2025-10-11 22:53:35,503 | INFO     | sum of deviations: 127153688656.90622
[2025-10-11 18:54:51] 2025-10-11 22:53:35,503 | INFO     | mean x: 1760212172.3695014
[2025-10-11 18:54:51] 2025-10-11 22:53:35,503 | INFO     | mean y: 2077747.6832844575
[2025-10-11 18:54:51] 2025-10-11 22:53:35,504 | INFO     | -- intersect: -18200865642.58916
[2025-10-11 18:54:51] 2025-10-11 22:53:35,504 | INFO     | intersect: -18200865642.58916
[2025-10-11 18:54:51] 2025-10-11 22:53:35,504 | INFO     | chi2: 2.6207006353741797
[2025-10-11 18:54:51] 2025-10-11 22:53:35,504 | INFO     | current chi2=2.6207006353741797 (change=-0.0022802104541857116 %)
[2025-10-11 18:54:51] 2025-10-11 22:53:35,504 | INFO     | right removable region: 340
[2025-10-11 18:54:51] 2025-10-11 22:53:35,505 | INFO     | sum of square deviations: 12844482034.404621
[2025-10-11 18:54:51] 2025-10-11 22:53:35,528 | INFO     | sum of deviations: 25023171236.49137
[2025-10-11 18:54:51] 2025-10-11 22:53:35,528 | INFO     | mean x: 1760212629.8728323
[2025-10-11 18:54:51] 2025-10-11 22:53:35,528 | INFO     | mean y: 2086952.9884393064
[2025-10-11 18:54:51] 2025-10-11 22:53:35,528 | INFO     | -- intersect: -3427097807.593022
[2025-10-11 18:54:51] 2025-10-11 22:53:35,528 | INFO     | intersect: -3427097807.593022
[2025-10-11 18:54:51] 2025-10-11 22:53:35,529 | INFO     | chi2: 2.0018240014436275
[2025-10-11 18:54:51] 2025-10-11 22:53:35,529 | INFO     | current chi2=2.0018240014436275 (change=52.08367210390673 %)
[2025-10-11 18:54:51] 2025-10-11 22:53:35,530 | INFO     | sum of square deviations: 12295644323.953176
[2025-10-11 18:54:51] 2025-10-11 22:53:35,552 | INFO     | sum of deviations: 2115666450.6363525
[2025-10-11 18:54:51] 2025-10-11 22:53:35,553 | INFO     | mean x: 1760212782.3753667
[2025-10-11 18:54:51] 2025-10-11 22:53:35,553 | INFO     | mean y: 2093313.9090909092
[2025-10-11 18:54:51] 2025-10-11 22:53:35,553 | INFO     | -- intersect: -300780047.7087343
[2025-10-11 18:54:51] 2025-10-11 22:53:35,553 | INFO     | intersect: -300780047.7087343
[2025-10-11 18:54:51] 2025-10-11 22:53:35,554 | INFO     | chi2: 1.8023897290404385
[2025-10-11 18:54:51] 2025-10-11 22:53:35,554 | INFO     | current chi2=1.8023897290404385 (change=9.962627696509072 %)
[2025-10-11 18:54:51] 2025-10-11 22:53:35,554 | INFO     | left removable region: 20
[2025-10-11 18:54:51] 2025-10-11 22:53:35,579 | INFO     | sum of square deviations: 10161180995.950012
[2025-10-11 18:54:51] 2025-10-11 22:53:35,583 | INFO     | sum of deviations: 42107141492.025
[2025-10-11 18:54:51] 2025-10-11 22:53:35,607 | INFO     | mean x: 1760212751.8625
[2025-10-11 18:54:51] 2025-10-11 22:53:35,608 | INFO     | mean y: 2101485.31875
[2025-10-11 18:54:51] 2025-10-11 22:53:35,608 | INFO     | -- intersect: -7292082864.736852
[2025-10-11 18:54:51] 2025-10-11 22:53:35,608 | INFO     | intersect: -7292082864.736852
[2025-10-11 18:54:51] 2025-10-11 22:53:35,608 | INFO     | chi2: 0.13178384757646167
[2025-10-11 18:54:51] 2025-10-11 22:53:35,609 | INFO     | -- intersect: -7292082864.736852
[2025-10-11 18:54:51] 2025-10-11 22:53:35,609 | INFO     | current memory leak: 4.14 B/s (using 320 data points, chi2=0.13)
[2025-10-11 18:54:51] 2025-10-11 22:53:35,610 | INFO     | could have reported an average CPU frequency of 2605 MHz (15 samples)
[2025-10-11 18:54:51] 2025-10-11 22:53:35,610 | INFO     | ..............................
[2025-10-11 18:54:51] 2025-10-11 22:53:35,610 | INFO     | . Timing measurements:
[2025-10-11 18:54:51] 2025-10-11 22:53:35,610 | INFO     | . get job = 0 s
[2025-10-11 18:54:51] 2025-10-11 22:53:35,610 | INFO     | . initial setup = 4 s
[2025-10-11 18:54:51] 2025-10-11 22:53:35,610 | INFO     | . payload setup = 45 s
[2025-10-11 18:54:51] 2025-10-11 22:53:35,610 | INFO     | . stage-in = 0 s
[2025-10-11 18:54:51] 2025-10-11 22:53:35,611 | INFO     | . payload execution = 21397 s
[2025-10-11 18:54:51] 2025-10-11 22:53:35,611 | INFO     | . stage-out = 9 s
[2025-10-11 18:54:51] 2025-10-11 22:53:35,611 | INFO     | . log creation = 2 s
[2025-10-11 18:54:51] 2025-10-11 22:53:35,611 | INFO     | ..............................
[2025-10-11 18:54:51] 2025-10-11 22:53:35,940 | INFO     | time since job start (21571s) is within the limit (172800.0s)
[2025-10-11 18:54:51] 2025-10-11 22:53:36,773 | INFO     | 
[2025-10-11 18:54:51] 2025-10-11 22:53:36,773 | INFO     | job summary report
[2025-10-11 18:54:51] 2025-10-11 22:53:36,773 | INFO     | --------------------------------------------------
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | PanDA job id: 6838118354
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | task id: 46676269
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | errors: (none)
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | pilot state: finished 
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | transexitcode: 0
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | exeerrorcode: 0
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | exeerrordiag: 
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | exitcode: 0
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | exitmsg: OK
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | cpuconsumptiontime: 47396 s
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | nevents: 400
[2025-10-11 18:54:51] 2025-10-11 22:53:36,774 | INFO     | neventsw: 0
[2025-10-11 18:54:51] 2025-10-11 22:53:36,775 | INFO     | pid: 178481
[2025-10-11 18:54:51] 2025-10-11 22:53:36,775 | INFO     | pgrp: 178481
[2025-10-11 18:54:51] 2025-10-11 22:53:36,775 | INFO     | corecount: 8
[2025-10-11 18:54:51] 2025-10-11 22:53:36,775 | INFO     | event service: False
[2025-10-11 18:54:51] 2025-10-11 22:53:36,775 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 13: 2348913, 25: 2348969, 36: 2349415, 47: 2349415, 21448: 2382948, 21458: 2391974, 21459: 2392030, 21496: 2392224}
[2025-10-11 18:54:51] 2025-10-11 22:53:36,779 | INFO     | --------------------------------------------------
[2025-10-11 18:54:51] 2025-10-11 22:53:36,779 | INFO     | 
[2025-10-11 18:54:51] 2025-10-11 22:53:36,779 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 18:54:51] 2025-10-11 22:53:37,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | job 6838118354 has completed (purged errors)
[2025-10-11 18:54:51] 2025-10-11 22:53:37,145 | INFO     | overall cleanup function is called
[2025-10-11 18:54:51] 2025-10-11 22:53:38,305 | INFO     | --- collectZombieJob: --- 10, [178481]
[2025-10-11 18:54:51] 2025-10-11 22:53:38,305 | INFO     | zombie collector waiting for pid 178481
[2025-10-11 18:54:51] 2025-10-11 22:53:38,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:54:51] 2025-10-11 22:53:38,306 | INFO     | collected zombie processes
[2025-10-11 18:54:51] 2025-10-11 22:53:38,306 | INFO     | will attempt to kill all subprocesses of pid=178481
[2025-10-11 18:54:51] 2025-10-11 22:53:45,122 | INFO     | PID=166636 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 18:54:51] 2025-10-11 22:53:45,122 | INFO     | .. there are 58 such processes running
[2025-10-11 18:54:51] 2025-10-11 22:53:45,193 | INFO     | process IDs to be killed: [178481] (in reverse order)
[2025-10-11 18:54:51] 2025-10-11 22:53:45,829 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:54:51] 2025-10-11 22:53:45,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:54:51] 2025-10-11 22:53:45,879 | INFO     | did not find any defunct processes belonging to 178481
[2025-10-11 18:54:51] 2025-10-11 22:53:45,925 | INFO     | did not find any defunct processes belonging to 178481
[2025-10-11 18:54:51] 2025-10-11 22:53:45,926 | INFO     | ready for new job
[2025-10-11 18:54:51] 2025-10-11 22:53:45,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:54:51] 2025-10-11 22:53:45,933 | INFO     | ***************************************
[2025-10-11 18:54:51] 2025-10-11 22:53:45,933 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:54:51] 2025-10-11 22:53:45,933 | INFO     | ***************************************
[2025-10-11 18:54:51] 2025-10-11 22:53:45,933 | INFO     | 
[2025-10-11 18:54:51] 2025-10-11 22:53:45,955 | INFO     | architecture information:
[2025-10-11 18:54:51] 2025-10-11 22:53:45,960 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:54:51] 2025-10-11 22:53:46,197 | INFO     | cat /etc/os-release:
[2025-10-11 18:54:51] NAME="CentOS Linux"
[2025-10-11 18:54:51] VERSION="7 (Core)"
[2025-10-11 18:54:51] ID="centos"
[2025-10-11 18:54:51] ID_LIKE="rhel fedora"
[2025-10-11 18:54:51] VERSION_ID="7"
[2025-10-11 18:54:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:54:51] ANSI_COLOR="0;31"
[2025-10-11 18:54:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:54:51] HOME_URL="https://www.centos.org/"
[2025-10-11 18:54:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:54:51] 
[2025-10-11 18:54:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:54:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:54:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:54:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:54:51] 
[2025-10-11 18:54:51] 2025-10-11 22:53:46,199 | INFO     | ***************************************
[2025-10-11 18:54:51] 2025-10-11 22:53:46,702 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 18:54:51] 2025-10-11 22:53:46,844 | INFO     | sufficient remaining disk space (94034198528 B)
[2025-10-11 18:54:51] 2025-10-11 22:53:46,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:54:51] 2025-10-11 22:53:46,845 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:54:51] 2025-10-11 22:53:46,845 | INFO     | update_server=False
[2025-10-11 18:54:51] 2025-10-11 22:53:46,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:54:51] 2025-10-11 22:53:46,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:54:51] 2025-10-11 22:53:46,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:54:51] 2025-10-11 22:53:47,038 | INFO     | all data control threads have been joined
[2025-10-11 18:54:51] 2025-10-11 22:53:47,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:54:51] 2025-10-11 22:53:47,135 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 18:54:51] 2025-10-11 22:53:47,135 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 18:54:51] 2025-10-11 22:53:47,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:54:51] 2025-10-11 22:53:47,136 | INFO     | will abort loop
[2025-10-11 18:54:51] 2025-10-11 22:53:47,139 | INFO     | all payload control threads have been joined
[2025-10-11 18:54:51] 2025-10-11 22:53:47,546 | INFO     | all job control threads have been joined
[2025-10-11 18:54:51] 2025-10-11 22:53:47,851 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:47,852 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:47,989 | INFO     | [job] validate thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:48,046 | INFO     | [data] control thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:48,141 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:48,147 | INFO     | [payload] control thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:48,552 | INFO     | [job] control thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:48,641 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:48,643 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:49,022 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:49,023 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:49,029 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:49,104 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:49,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:49,344 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:50,860 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:54:51] 2025-10-11 22:53:59,360 [wrapper] supervise_pilot (15 min periods counter: 25)
[2025-10-11 18:54:51] 2025-10-11 22:54:20,992 | INFO     | PID=166636 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 18:54:51] 2025-10-11 22:54:20,993 | INFO     | .. there are 58 such processes running
[2025-10-11 18:54:51] 2025-10-11 22:54:20,994 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:54:51] 2025-10-11 22:54:20,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:54:51] 2025-10-11 22:54:20,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:54:51] 2025-10-11 22:54:42,544 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:54:51] 2025-10-11 22:54:43,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140096105797440)>', '<ExcThread(monitor, started 140095365564160)>']
[2025-10-11 18:54:51] 2025-10-11 22:54:44,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:54:51] 2025-10-11 22:54:44,191 | INFO     | [monitor] control thread has ended
[2025-10-11 18:54:51] 2025-10-11 22:54:48,859 | INFO     | all workflow threads have been joined
[2025-10-11 18:54:51] 2025-10-11 22:54:48,859 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:54:51] 2025-10-11 22:54:48,860 | INFO     | traces error code: 0
[2025-10-11 18:54:51] 2025-10-11 22:54:48,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:54:51] 2025-10-11 22:54:49,471 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:54:51] 2025-10-11 22:54:49,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:54:51] 2025-10-11 22:54:49,544 [wrapper] pilotpid: 166636
[2025-10-11 18:54:51] 2025-10-11 22:54:49,611 [wrapper] Pilot exit status: 0
[2025-10-11 18:54:51] 2025-10-11 22:54:49,735 [wrapper] pandaids: 6838118354
[2025-10-11 18:54:51] 2025-10-11 22:54:50,175 [wrapper] cleanup supervisor_pilot 1909751 166637
[2025-10-11 18:54:51] 2025-10-11 22:54:50,266 [wrapper] Test setup, not cleaning
[2025-10-11 18:54:51] 2025-10-11 22:54:50,278 [wrapper] apfmon messages muted
[2025-10-11 18:54:51] 2025-10-11 22:54:50,294 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:54:51] 2025-10-11 22:54:50,314 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:54:51]  *** Error codes and diagnostics ***
[2025-10-11 18:54:51]     "exeErrorCode": 0,
[2025-10-11 18:54:51]     "exeErrorDiag": "",
[2025-10-11 18:54:51]     "pilotErrorCode": 0,
[2025-10-11 18:54:51]     "pilotErrorDiag": "",
[2025-10-11 18:54:51]  *** Listing of results directory ***
[2025-10-11 18:54:51] total 407552
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 01:36 pilot3.tar.gz
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 01:46 queuedata.json
[2025-10-11 18:54:51] -rwx------. 1 boincer umatlas     36292 Oct 11 01:47 runpilot2-wrapper.sh
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas       100 Oct 11 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:54:51] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 12:52 run_atlas
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas       105 Oct 11 12:52 job.xml
[2025-10-11 18:54:51] -rw-r--r--. 2 boincer umatlas 219695042 Oct 11 12:52 EVNT.46676267._002099.pool.root.1
[2025-10-11 18:54:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 12:52 start_atlas.sh
[2025-10-11 18:54:51] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 12:52 shared
[2025-10-11 18:54:51] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 12:52 input.tar.gz
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas         0 Oct 11 12:52 boinc_lockfile
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 12:52 pandaJob.out
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas    975512 Oct 11 12:53 agis_schedconf.cvmfs.json
[2025-10-11 18:54:51] drwx------. 5 boincer umatlas      4096 Oct 11 12:54 pilot3
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas      6860 Oct 11 18:45 init_data.xml
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas 187567263 Oct 11 18:51 HITS.46676269._052241.pool.root.1
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas       530 Oct 11 18:51 boinc_task_state.xml
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas      1044 Oct 11 18:52 memory_monitor_summary.json
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas   1560580 Oct 11 18:52 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas    556524 Oct 11 18:52 log.46676269._052241.job.log.tgz.1
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas      7829 Oct 11 18:53 heartbeat.json
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas        95 Oct 11 18:54 pilot_heartbeat.json
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 18:54 boinc_mmap_file
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas        28 Oct 11 18:54 wrapper_checkpoint.txt
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas      5009 Oct 11 18:54 pilotlog.txt
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas   2524641 Oct 11 18:54 log.46676269._052241.job.log.1
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas       357 Oct 11 18:54 output.list
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas       620 Oct 11 18:54 runtime_log
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas   3102720 Oct 11 18:54 result.tar.gz
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas      8714 Oct 11 18:54 runtime_log.err
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas       658 Oct 11 18:54 HIHKDmjchR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1XfNDmM6TDBn.diag
[2025-10-11 18:54:51] -rw-r--r--. 1 boincer umatlas     21210 Oct 11 18:54 stderr.txt
[2025-10-11 18:54:51] HITS file was successfully produced:
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas 187567263 Oct 11 18:51 shared/HITS.pool.root.1
[2025-10-11 18:54:51]  *** Contents of shared directory: ***
[2025-10-11 18:54:51] total 401336
[2025-10-11 18:54:51] -rw-r--r--. 2 boincer umatlas 219695042 Oct 11 12:52 ATLAS.root_0
[2025-10-11 18:54:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 12:52 start_atlas.sh
[2025-10-11 18:54:51] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 12:52 input.tar.gz
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas 187567263 Oct 11 18:51 HITS.pool.root.1
[2025-10-11 18:54:51] -rw-------. 1 boincer umatlas   3102720 Oct 11 18:54 result.tar.gz
18:55:13 (161567): run_atlas exited; CPU time 48584.372500
18:55:13 (161567): called boinc_finish(0)

</stderr_txt>
]]>

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