Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:29:21 (3719558): wrapper (7.7.26015): starting
15:29:21 (3719558): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 15:29:21] Arguments: --nthreads 4
[2025-10-12 15:29:21] Threads: 4
[2025-10-12 15:29:21] Checking for CVMFS
[2025-10-12 15:29:21] No cvmfs_config command found, will try listing directly
[2025-10-12 15:29:21] CVMFS is ok
[2025-10-12 15:29:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:29:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:29:21] Further information can be found at the LHC@home message board.
[2025-10-12 15:29:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:29:21] Checking for apptainer binary...
[2025-10-12 15:29:21] which: no apptainer in ((null))
[2025-10-12 15:29:21] apptainer is not installed, using version from CVMFS
[2025-10-12 15:29:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:29:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-10-12 15:29:21] apptainer works
[2025-10-12 15:29:22] Set ATHENA_PROC_NUMBER=4
[2025-10-12 15:29:22] Set ATHENA_CORE_NUMBER=4
[2025-10-12 15:29:22] Starting ATLAS job with PandaID=6838230449
[2025-10-12 15:29:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:00:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:00:37] 2025-10-12 16:29:49,294 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 19:00:37] 2025-10-12 16:29:49,304 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2752.4188437500006
[2025-10-12 19:00:37] 2025-10-12 16:29:49,316 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6838230449/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,317 | INFO     | extracted standard info from prmon json
[2025-10-12 19:00:37] 2025-10-12 16:29:49,317 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:00:37] 2025-10-12 16:29:49,318 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:00:37] 2025-10-12 16:29:49,318 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:00:37] 2025-10-12 16:29:49,318 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:00:37] 2025-10-12 16:29:49,322 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:00:37] 2025-10-12 16:29:49,322 | INFO     | sum of square deviations: 1719429448.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,323 | INFO     | sum of deviations: -1299179159.000004
[2025-10-12 19:00:37] 2025-10-12 16:29:49,323 | INFO     | mean x: 1760281167.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,324 | INFO     | mean y: 2349288.779661017
[2025-10-12 19:00:37] 2025-10-12 16:29:49,324 | INFO     | -- intersect: 1332395490.330238
[2025-10-12 19:00:37] 2025-10-12 16:29:49,324 | INFO     | intersect: 1332395490.330238
[2025-10-12 19:00:37] 2025-10-12 16:29:49,324 | INFO     | chi2: 1.3989993272377168
[2025-10-12 19:00:37] 2025-10-12 16:29:49,324 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,325 | INFO     | sum of deviations: -1209651044.9999957
[2025-10-12 19:00:37] 2025-10-12 16:29:49,326 | INFO     | mean x: 1760281014.5
[2025-10-12 19:00:37] 2025-10-12 16:29:49,326 | INFO     | mean y: 2349384.9418604653
[2025-10-12 19:00:37] 2025-10-12 16:29:49,326 | INFO     | -- intersect: 1351911957.5599976
[2025-10-12 19:00:37] 2025-10-12 16:29:49,326 | INFO     | intersect: 1351911957.5599976
[2025-10-12 19:00:37] 2025-10-12 16:29:49,326 | INFO     | chi2: 1.3989544804117215
[2025-10-12 19:00:37] 2025-10-12 16:29:49,326 | INFO     | current chi2=1.3989544804117215 (change=0.003205635994393808 %)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,326 | INFO     | right removable region: 171
[2025-10-12 19:00:37] 2025-10-12 16:29:49,327 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,328 | INFO     | sum of deviations: -22933057634.499996
[2025-10-12 19:00:37] 2025-10-12 16:29:49,328 | INFO     | mean x: 1760281319.5
[2025-10-12 19:00:37] 2025-10-12 16:29:49,328 | INFO     | mean y: 2372219.5639534886
[2025-10-12 19:00:37] 2025-10-12 16:29:49,328 | INFO     | -- intersect: 25587934063.793217
[2025-10-12 19:00:37] 2025-10-12 16:29:49,328 | INFO     | intersect: 25587934063.793217
[2025-10-12 19:00:37] 2025-10-12 16:29:49,328 | INFO     | chi2: 0.08754899545906518
[2025-10-12 19:00:37] 2025-10-12 16:29:49,328 | INFO     | current chi2=0.08754899545906518 (change=93.7420273366444 %)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,329 | INFO     | sum of square deviations: 1444149868.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,330 | INFO     | sum of deviations: -19651878035.000008
[2025-10-12 19:00:37] 2025-10-12 16:29:49,330 | INFO     | mean x: 1760281472.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,330 | INFO     | mean y: 2368468.724550898
[2025-10-12 19:00:37] 2025-10-12 16:29:49,330 | INFO     | -- intersect: 23956140553.97345
[2025-10-12 19:00:37] 2025-10-12 16:29:49,330 | INFO     | intersect: 23956140553.97345
[2025-10-12 19:00:37] 2025-10-12 16:29:49,330 | INFO     | chi2: 0.08501803271661343
[2025-10-12 19:00:37] 2025-10-12 16:29:49,330 | INFO     | current chi2=0.08501803271661343 (change=2.890910088894326 %)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,331 | INFO     | left removable region: 20
[2025-10-12 19:00:37] 2025-10-12 16:29:49,331 | INFO     | sum of square deviations: 1067554900.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | sum of deviations: -11432157742.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | mean x: 1760281594.0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | mean y: 2359123.490066225
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | -- intersect: 18852740357.230083
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | intersect: 18852740357.230083
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | chi2: 0.06658662794154055
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | -- intersect: 18852740357.230083
[2025-10-12 19:00:37] 2025-10-12 16:29:49,332 | INFO     | current memory leak: -10.71 B/s (using 151 data points, chi2=0.07)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,333 | INFO     | could have reported an average CPU frequency of 2696 MHz (9 samples)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,333 | INFO     | ..............................
[2025-10-12 19:00:37] 2025-10-12 16:29:49,333 | INFO     | . Timing measurements:
[2025-10-12 19:00:37] 2025-10-12 16:29:49,333 | INFO     | . get job = 0 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,333 | INFO     | . initial setup = 1 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,334 | INFO     | . payload setup = 6 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,334 | INFO     | . stage-in = 0 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,334 | INFO     | . payload execution = 10785 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,334 | INFO     | . stage-out = 1 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,334 | INFO     | . log creation = 0 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,334 | INFO     | ..............................
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | 
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | job summary report
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | --------------------------------------------------
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | PanDA job id: 6838230449
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | task id: 46676269
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | errors: (none)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | pilot state: finished 
[2025-10-12 19:00:37] 2025-10-12 16:29:49,432 | INFO     | transexitcode: 0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | exeerrorcode: 0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | exeerrordiag: 
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | exitcode: 0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | exitmsg: OK
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | cpuconsumptiontime: 41366 s
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | nevents: 400
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | neventsw: 0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | pid: 3739123
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | pgrp: 3739123
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | corecount: 4
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | event service: False
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | sizes: {0: 2348868, 4: 2349130, 11: 2349158, 10795: 2378236, 10797: 2387312, 10802: 2387514}
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | --------------------------------------------------
[2025-10-12 19:00:37] 2025-10-12 16:29:49,433 | INFO     | 
[2025-10-12 19:00:37] 2025-10-12 16:29:49,434 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-10-12 19:00:37] 2025-10-12 16:29:49,455 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,456 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | job 6838230449 has completed (purged errors)
[2025-10-12 19:00:37] 2025-10-12 16:29:49,457 | INFO     | overall cleanup function is called
[2025-10-12 19:00:37] 2025-10-12 16:29:50,377 | INFO     | PID=3724777 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 19:00:37] 2025-10-12 16:29:50,377 | INFO     | .. there are 5 such processes running
[2025-10-12 19:00:37] 2025-10-12 16:29:50,465 | INFO     | --- collectZombieJob: --- 10, [3739123]
[2025-10-12 19:00:37] 2025-10-12 16:29:50,466 | INFO     | zombie collector waiting for pid 3739123
[2025-10-12 19:00:37] 2025-10-12 16:29:50,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:00:37] 2025-10-12 16:29:50,466 | INFO     | collected zombie processes
[2025-10-12 19:00:37] 2025-10-12 16:29:50,466 | INFO     | will attempt to kill all subprocesses of pid=3739123
[2025-10-12 19:00:37] 2025-10-12 16:29:50,830 | INFO     | process IDs to be killed: [3739123] (in reverse order)
[2025-10-12 19:00:37] 2025-10-12 16:29:50,945 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:00:37] 2025-10-12 16:29:50,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:00:37] 2025-10-12 16:29:50,958 | INFO     | did not find any defunct processes belonging to 3739123
[2025-10-12 19:00:37] 2025-10-12 16:29:50,971 | INFO     | did not find any defunct processes belonging to 3739123
[2025-10-12 19:00:37] 2025-10-12 16:29:50,971 | INFO     | ready for new job
[2025-10-12 19:00:37] 2025-10-12 16:29:50,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:00:37] 2025-10-12 16:29:50,973 | INFO     | ***************************************
[2025-10-12 19:00:37] 2025-10-12 16:29:50,973 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:00:37] 2025-10-12 16:29:50,974 | INFO     | ***************************************
[2025-10-12 19:00:37] 2025-10-12 16:29:50,974 | INFO     | 
[2025-10-12 19:00:37] 2025-10-12 16:29:50,978 | INFO     | architecture information:
[2025-10-12 19:00:37] 2025-10-12 16:29:50,978 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:00:37] 2025-10-12 16:29:50,993 | INFO     | cat /etc/os-release:
[2025-10-12 19:00:37] NAME="CentOS Linux"
[2025-10-12 19:00:37] VERSION="7 (Core)"
[2025-10-12 19:00:37] ID="centos"
[2025-10-12 19:00:37] ID_LIKE="rhel fedora"
[2025-10-12 19:00:37] VERSION_ID="7"
[2025-10-12 19:00:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:00:37] ANSI_COLOR="0;31"
[2025-10-12 19:00:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:00:37] HOME_URL="https://www.centos.org/"
[2025-10-12 19:00:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:00:37] 
[2025-10-12 19:00:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:00:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:00:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:00:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:00:37] 
[2025-10-12 19:00:37] 2025-10-12 16:29:50,994 | INFO     | ***************************************
[2025-10-12 19:00:37] 2025-10-12 16:29:51,497 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-10-12 19:00:37] 2025-10-12 16:29:51,514 | INFO     | sufficient remaining disk space (691565232128 B)
[2025-10-12 19:00:37] 2025-10-12 16:29:51,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:00:37] 2025-10-12 16:29:51,515 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:00:37] 2025-10-12 16:29:51,515 | INFO     | update_server=False
[2025-10-12 19:00:37] 2025-10-12 16:29:51,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:00:37] 2025-10-12 16:29:51,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:00:37] 2025-10-12 16:29:51,720 | INFO     | all data control threads have been joined
[2025-10-12 19:00:37] 2025-10-12 16:29:51,778 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:00:37] 2025-10-12 16:29:51,778 | INFO     | aborting loop
[2025-10-12 19:00:37] 2025-10-12 16:29:51,966 | INFO     | all job control threads have been joined
[2025-10-12 19:00:37] 2025-10-12 16:29:52,053 | INFO     | all payload control threads have been joined
[2025-10-12 19:00:37] 2025-10-12 16:29:52,520 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:52,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:00:37] 2025-10-12 16:29:52,725 | INFO     | [data] control thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:52,783 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:52,783 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:52,971 | INFO     | [job] control thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:53,059 | INFO     | [payload] control thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:53,182 | INFO     | [job] validate thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:53,304 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:53,596 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:53,726 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:53,912 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:54,010 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:54,442 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:00:37] 2025-10-12 16:29:54,543 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:55,448 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:29:55,521 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:30:02,149 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:00:37] 2025-10-12 16:30:03,154 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:00:37] 2025-10-12 16:30:22,952 | INFO     | PID=3724777 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:00:37] 2025-10-12 16:30:22,953 | INFO     | .. there are 5 such processes running
[2025-10-12 19:00:37] 2025-10-12 16:30:22,953 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:00:37] 2025-10-12 16:30:22,953 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:00:37] 2025-10-12 16:30:22,953 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:00:37] 2025-10-12 16:30:49,461 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:00:37] 2025-10-12 16:30:50,568 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22612107429696)>', '<ExcThread(monitor, started 22611870320384)>']
[2025-10-12 19:00:37] 2025-10-12 16:30:51,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:00:37] 2025-10-12 16:30:51,081 | INFO     | [monitor] control thread has ended
[2025-10-12 19:00:37] 2025-10-12 16:30:55,592 | INFO     | all workflow threads have been joined
[2025-10-12 19:00:37] 2025-10-12 16:30:55,593 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:00:37] 2025-10-12 16:30:55,593 | INFO     | traces error code: 0
[2025-10-12 19:00:37] 2025-10-12 16:30:55,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:00:37] 2025-10-12 16:30:55,748 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:00:37] 2025-10-12 16:30:55,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:00:37] 2025-10-12 16:30:55,753 [wrapper] pilotpid: 3724777
[2025-10-12 19:00:37] 2025-10-12 16:30:55,756 [wrapper] Pilot exit status: 0
[2025-10-12 19:00:37] 2025-10-12 16:30:55,767 [wrapper] pandaids: 6838230449
[2025-10-12 19:00:37] 2025-10-12 16:30:55,845 [wrapper] cleanup supervisor_pilot 3954317 3724778
[2025-10-12 19:00:37] 2025-10-12 16:30:55,848 [wrapper] Test setup, not cleaning
[2025-10-12 19:00:37] 2025-10-12 16:30:55,851 [wrapper] apfmon messages muted
[2025-10-12 19:00:37] 2025-10-12 16:30:55,854 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:00:37] 2025-10-12 16:30:55,856 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:00:37]  *** Error codes and diagnostics ***
[2025-10-12 19:00:37]     "exeErrorCode": 0,
[2025-10-12 19:00:37]     "exeErrorDiag": "",
[2025-10-12 19:00:37]     "pilotErrorCode": 0,
[2025-10-12 19:00:37]     "pilotErrorDiag": "",
[2025-10-12 19:00:37]  *** Listing of results directory ***
[2025-10-12 19:00:37] total 419156
[2025-10-12 19:00:37] -rwx------ 1 boinc boinc     36292 Oct 11 10:40 runpilot2-wrapper.sh
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc      5112 Oct 11 10:40 queuedata.json
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc    557409 Oct 11 10:40 pilot3.tar.gz
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc       100 Oct 12 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:00:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 15:29 run_atlas
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc       105 Oct 12 15:29 job.xml
[2025-10-12 19:00:37] -rw-r--r-- 2 boinc boinc 221023750 Oct 12 15:29 EVNT.46676267._002182.pool.root.1
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc      6636 Oct 12 15:29 init_data.xml
[2025-10-12 19:00:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:29 start_atlas.sh
[2025-10-12 19:00:37] drwxrwx--x 2 boinc boinc      4096 Oct 12 15:29 shared
[2025-10-12 19:00:37] -rw-r--r-- 2 boinc boinc    569674 Oct 12 15:29 input.tar.gz
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:29 boinc_lockfile
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc      2550 Oct 12 15:29 pandaJob.out
[2025-10-12 19:00:37] -rw------- 1 boinc boinc    975528 Oct 12 15:29 agis_schedconf.cvmfs.json
[2025-10-12 19:00:37] drwx------ 5 boinc boinc      4096 Oct 12 15:29 pilot3
[2025-10-12 19:00:37] -rw------- 1 boinc boinc 200490227 Oct 12 18:29 HITS.46676269._054397.pool.root.1
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc       527 Oct 12 18:29 boinc_task_state.xml
[2025-10-12 19:00:37] -rw------- 1 boinc boinc        95 Oct 12 18:29 pilot_heartbeat.json
[2025-10-12 19:00:37] -rw------- 1 boinc boinc      1033 Oct 12 18:29 memory_monitor_summary.json
[2025-10-12 19:00:37] -rw------- 1 boinc boinc   1560580 Oct 12 18:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:00:37] -rw------- 1 boinc boinc    362774 Oct 12 18:29 log.46676269._054397.job.log.tgz.1
[2025-10-12 19:00:37] -rw------- 1 boinc boinc      7833 Oct 12 18:29 heartbeat.json
[2025-10-12 19:00:37] -rw------- 1 boinc boinc      4905 Oct 12 18:30 pilotlog.txt
[2025-10-12 19:00:37] -rw------- 1 boinc boinc   1537402 Oct 12 18:30 log.46676269._054397.job.log.1
[2025-10-12 19:00:37] -rw------- 1 boinc boinc       357 Oct 12 18:30 output.list
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:30 runtime_log
[2025-10-12 19:00:37] -rw------- 1 boinc boinc   1914880 Oct 12 18:30 result.tar.gz
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc      9070 Oct 12 18:30 runtime_log.err
[2025-10-12 19:00:37] -rw------- 1 boinc boinc       665 Oct 12 18:30 aLwMDmTKkR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXZRMDmmE8Urm.diag
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc        26 Oct 12 19:00 wrapper_checkpoint.txt
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:00 boinc_mmap_file
[2025-10-12 19:00:37] -rw-r--r-- 1 boinc boinc     20945 Oct 12 19:00 stderr.txt
[2025-10-12 19:00:37] HITS file was successfully produced:
[2025-10-12 19:00:37] -rw------- 1 boinc boinc 200490227 Oct 12 18:29 shared/HITS.pool.root.1
[2025-10-12 19:00:37]  *** Contents of shared directory: ***
[2025-10-12 19:00:37] total 414092
[2025-10-12 19:00:37] -rw-r--r-- 2 boinc boinc 221023750 Oct 12 15:29 ATLAS.root_0
[2025-10-12 19:00:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:29 start_atlas.sh
[2025-10-12 19:00:37] -rw-r--r-- 2 boinc boinc    569674 Oct 12 15:29 input.tar.gz
[2025-10-12 19:00:37] -rw------- 1 boinc boinc 200490227 Oct 12 18:29 HITS.pool.root.1
[2025-10-12 19:00:37] -rw------- 1 boinc boinc   1914880 Oct 12 18:30 result.tar.gz
19:00:39 (3719558): run_atlas exited; CPU time 41783.905412
19:00:39 (3719558): called boinc_finish(0)

</stderr_txt>
]]>

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