Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:08:12 (32058): wrapper (7.7.26015): starting
20:08:12 (32058): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 20:08:12] Arguments: --nthreads 4
[2025-10-12 20:08:12] Threads: 4
[2025-10-12 20:08:12] Checking for CVMFS
[2025-10-12 20:08:12] No cvmfs_config command found, will try listing directly
[2025-10-12 20:08:12] CVMFS is ok
[2025-10-12 20:08:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:08:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:08:12] Further information can be found at the LHC@home message board.
[2025-10-12 20:08:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:08:12] Checking for apptainer binary...
[2025-10-12 20:08:12] which: no apptainer in ((null))
[2025-10-12 20:08:12] apptainer is not installed, using version from CVMFS
[2025-10-12 20:08:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:08:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-10-12 20:08:13] apptainer works
[2025-10-12 20:08:13] Set ATHENA_PROC_NUMBER=4
[2025-10-12 20:08:13] Set ATHENA_CORE_NUMBER=4
[2025-10-12 20:08:13] Starting ATLAS job with PandaID=6838229515
[2025-10-12 20:08:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:07:28]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:07:28] 2025-10-12 20:39:09,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:07:28] 2025-10-12 20:39:09,453 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:07:28] 2025-10-12 20:39:09,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:07:28] 2025-10-12 20:39:09,457 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:07:28] 2025-10-12 20:39:09,457 | INFO     | sum of square deviations: 1005179777.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,458 | INFO     | sum of deviations: 6313516622.5
[2025-10-12 23:07:28] 2025-10-12 20:39:09,458 | INFO     | mean x: 1760297024.5
[2025-10-12 23:07:28] 2025-10-12 20:39:09,458 | INFO     | mean y: 2292853.114864865
[2025-10-12 23:07:28] 2025-10-12 20:39:09,458 | INFO     | -- intersect: -11054102011.77908
[2025-10-12 23:07:28] 2025-10-12 20:39:09,458 | INFO     | intersect: -11054102011.77908
[2025-10-12 23:07:28] 2025-10-12 20:39:09,459 | INFO     | chi2: 1.9349180311343135
[2025-10-12 23:07:28] 2025-10-12 20:39:09,459 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,460 | INFO     | sum of deviations: 14497973456.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,460 | INFO     | mean x: 1760296872.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,460 | INFO     | mean y: 2305162.7342657344
[2025-10-12 23:07:28] 2025-10-12 20:39:09,460 | INFO     | -- intersect: -28144423053.463306
[2025-10-12 23:07:28] 2025-10-12 20:39:09,460 | INFO     | intersect: -28144423053.463306
[2025-10-12 23:07:28] 2025-10-12 20:39:09,460 | INFO     | chi2: 1.240915205643051
[2025-10-12 23:07:28] 2025-10-12 20:39:09,461 | INFO     | current chi2=1.240915205643051 (change=35.86729847591605 %)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,461 | INFO     | sum of square deviations: 814878534.5
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | sum of deviations: 13918506365.5
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | mean x: 1760296719.5
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | mean y: 2304200.0362318843
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | -- intersect: -30064386795.282307
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | intersect: -30064386795.282307
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | chi2: 1.242237973818075
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | current chi2=1.242237973818075 (change=-0.10659617748326428 %)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,462 | INFO     | right removable region: 137
[2025-10-12 23:07:28] 2025-10-12 20:39:09,463 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,463 | INFO     | sum of deviations: -10642884232.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,464 | INFO     | mean x: 1760297177.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,464 | INFO     | mean y: 2318613.2657342656
[2025-10-12 23:07:28] 2025-10-12 20:39:09,464 | INFO     | -- intersect: 20664683786.422153
[2025-10-12 23:07:28] 2025-10-12 20:39:09,464 | INFO     | intersect: 20664683786.422153
[2025-10-12 23:07:28] 2025-10-12 20:39:09,464 | INFO     | chi2: 0.7197712782875716
[2025-10-12 23:07:28] 2025-10-12 20:39:09,464 | INFO     | current chi2=0.7197712782875716 (change=62.80094212230698 %)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,464 | INFO     | sum of square deviations: 814878534.5
[2025-10-12 23:07:28] 2025-10-12 20:39:09,465 | INFO     | sum of deviations: -10380893624.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,465 | INFO     | mean x: 1760297329.5
[2025-10-12 23:07:28] 2025-10-12 20:39:09,465 | INFO     | mean y: 2318172.3188405796
[2025-10-12 23:07:28] 2025-10-12 20:39:09,466 | INFO     | -- intersect: 22427082785.07571
[2025-10-12 23:07:28] 2025-10-12 20:39:09,466 | INFO     | intersect: 22427082785.07571
[2025-10-12 23:07:28] 2025-10-12 20:39:09,466 | INFO     | chi2: 0.7199581139248109
[2025-10-12 23:07:28] 2025-10-12 20:39:09,466 | INFO     | current chi2=0.7199581139248109 (change=-0.025957639999725907 %)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,466 | INFO     | left removable region: 20
[2025-10-12 23:07:28] 2025-10-12 20:39:09,466 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,467 | INFO     | sum of deviations: -1072446856.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,467 | INFO     | mean x: 1760297299.0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,467 | INFO     | mean y: 2329911.017094017
[2025-10-12 23:07:28] 2025-10-12 20:39:09,467 | INFO     | -- intersect: 3803852020.9090633
[2025-10-12 23:07:28] 2025-10-12 20:39:09,467 | INFO     | intersect: 3803852020.9090633
[2025-10-12 23:07:28] 2025-10-12 20:39:09,467 | INFO     | chi2: 0.003180347322220085
[2025-10-12 23:07:28] 2025-10-12 20:39:09,468 | INFO     | -- intersect: 3803852020.9090633
[2025-10-12 23:07:28] 2025-10-12 20:39:09,468 | INFO     | current memory leak: -2.16 B/s (using 117 data points, chi2=0.00)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,468 | INFO     | could have reported an average CPU frequency of 2742 MHz (8 samples)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,468 | INFO     | ..............................
[2025-10-12 23:07:28] 2025-10-12 20:39:09,468 | INFO     | . Timing measurements:
[2025-10-12 23:07:28] 2025-10-12 20:39:09,468 | INFO     | . get job = 0 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,468 | INFO     | . initial setup = 1 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,469 | INFO     | . payload setup = 9 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,469 | INFO     | . stage-in = 0 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,469 | INFO     | . payload execution = 8999 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,469 | INFO     | . stage-out = 0 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,469 | INFO     | . log creation = 0 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,469 | INFO     | ..............................
[2025-10-12 23:07:28] 2025-10-12 20:39:09,566 | INFO     | 
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | job summary report
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | --------------------------------------------------
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | PanDA job id: 6838229515
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | task id: 46676269
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | errors: (none)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | pilot state: finished 
[2025-10-12 23:07:28] 2025-10-12 20:39:09,567 | INFO     | transexitcode: 0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | exeerrorcode: 0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | exeerrordiag: 
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | exitcode: 0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | exitmsg: OK
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | cpuconsumptiontime: 34583 s
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | nevents: 400
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | neventsw: 0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | pid: 144155
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | pgrp: 144155
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | corecount: 4
[2025-10-12 23:07:28] 2025-10-12 20:39:09,568 | INFO     | event service: False
[2025-10-12 23:07:28] 2025-10-12 20:39:09,569 | INFO     | sizes: {0: 2348869, 1: 2348869, 7: 2349159, 11: 2349187, 9012: 2377746, 9014: 2386768, 9016: 2386952, 9025: 2387146}
[2025-10-12 23:07:28] 2025-10-12 20:39:09,569 | INFO     | --------------------------------------------------
[2025-10-12 23:07:28] 2025-10-12 20:39:09,569 | INFO     | 
[2025-10-12 23:07:28] 2025-10-12 20:39:09,569 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-10-12 23:07:28] 2025-10-12 20:39:09,603 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,603 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,603 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,603 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,605 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:07:28] 2025-10-12 20:39:09,605 | INFO     | job 6838229515 has completed (purged errors)
[2025-10-12 23:07:28] 2025-10-12 20:39:09,605 | INFO     | overall cleanup function is called
[2025-10-12 23:07:28] 2025-10-12 20:39:10,614 | INFO     | --- collectZombieJob: --- 10, [144155]
[2025-10-12 23:07:28] 2025-10-12 20:39:10,615 | INFO     | zombie collector waiting for pid 144155
[2025-10-12 23:07:28] 2025-10-12 20:39:10,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:07:28] 2025-10-12 20:39:10,615 | INFO     | collected zombie processes
[2025-10-12 23:07:28] 2025-10-12 20:39:10,615 | INFO     | will attempt to kill all subprocesses of pid=144155
[2025-10-12 23:07:28] 2025-10-12 20:39:11,368 | INFO     | process IDs to be killed: [144155] (in reverse order)
[2025-10-12 23:07:28] 2025-10-12 20:39:11,609 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:07:28] 2025-10-12 20:39:11,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:07:28] 2025-10-12 20:39:11,641 | INFO     | did not find any defunct processes belonging to 144155
[2025-10-12 23:07:28] 2025-10-12 20:39:11,673 | INFO     | did not find any defunct processes belonging to 144155
[2025-10-12 23:07:28] 2025-10-12 20:39:11,674 | INFO     | ready for new job
[2025-10-12 23:07:28] 2025-10-12 20:39:11,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:07:28] 2025-10-12 20:39:11,677 | INFO     | ***************************************
[2025-10-12 23:07:28] 2025-10-12 20:39:11,677 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:07:28] 2025-10-12 20:39:11,677 | INFO     | ***************************************
[2025-10-12 23:07:28] 2025-10-12 20:39:11,677 | INFO     | 
[2025-10-12 23:07:28] 2025-10-12 20:39:11,686 | INFO     | architecture information:
[2025-10-12 23:07:28] 2025-10-12 20:39:11,687 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:07:28] 2025-10-12 20:39:11,712 | INFO     | cat /etc/os-release:
[2025-10-12 23:07:28] NAME="CentOS Linux"
[2025-10-12 23:07:28] VERSION="7 (Core)"
[2025-10-12 23:07:28] ID="centos"
[2025-10-12 23:07:28] ID_LIKE="rhel fedora"
[2025-10-12 23:07:28] VERSION_ID="7"
[2025-10-12 23:07:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:07:28] ANSI_COLOR="0;31"
[2025-10-12 23:07:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:07:28] HOME_URL="https://www.centos.org/"
[2025-10-12 23:07:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:07:28] 
[2025-10-12 23:07:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:07:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:07:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:07:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:07:28] 
[2025-10-12 23:07:28] 2025-10-12 20:39:11,713 | INFO     | ***************************************
[2025-10-12 23:07:28] 2025-10-12 20:39:12,216 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-10-12 23:07:28] 2025-10-12 20:39:12,242 | INFO     | sufficient remaining disk space (3336433565696 B)
[2025-10-12 23:07:28] 2025-10-12 20:39:12,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:07:28] 2025-10-12 20:39:12,243 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:07:28] 2025-10-12 20:39:12,243 | INFO     | update_server=False
[2025-10-12 23:07:28] 2025-10-12 20:39:12,243 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:07:28] 2025-10-12 20:39:12,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:07:28] 2025-10-12 20:39:12,379 | INFO     | all payload control threads have been joined
[2025-10-12 23:07:28] 2025-10-12 20:39:12,490 | INFO     | all job control threads have been joined
[2025-10-12 23:07:28] 2025-10-12 20:39:12,577 | INFO     | all data control threads have been joined
[2025-10-12 23:07:28] 2025-10-12 20:39:12,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:07:28] 2025-10-12 20:39:12,999 | INFO     | aborting loop
[2025-10-12 23:07:28] 2025-10-12 20:39:13,249 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,269 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,278 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,305 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,384 | INFO     | [payload] control thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,389 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,495 | INFO     | [job] control thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,536 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,585 | INFO     | [data] control thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,645 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:13,935 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:14,003 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:14,249 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:14,423 | INFO     | [job] validate thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:14,577 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:07:28] 2025-10-12 20:39:15,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:07:28] 2025-10-12 20:39:15,582 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:19,578 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:07:28] 2025-10-12 20:39:40,574 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:07:28] 2025-10-12 20:39:40,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22695648057152)>', '<ExcThread(monitor, started 22695204865792)>']
[2025-10-12 23:07:28] 2025-10-12 20:39:41,941 | INFO     | PID=57743 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:07:28] 2025-10-12 20:39:41,942 | INFO     | .. there are 9 such processes running
[2025-10-12 23:07:28] 2025-10-12 20:39:41,942 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:07:28] 2025-10-12 20:39:41,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:07:28] 2025-10-12 20:39:41,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:07:28] 2025-10-12 20:39:41,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:07:28] 2025-10-12 20:39:41,942 | INFO     | [monitor] control thread has ended
[2025-10-12 23:07:28] 2025-10-12 20:39:45,718 | INFO     | all workflow threads have been joined
[2025-10-12 23:07:28] 2025-10-12 20:39:45,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:07:28] 2025-10-12 20:39:45,719 | INFO     | traces error code: 0
[2025-10-12 23:07:28] 2025-10-12 20:39:45,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:07:28] 2025-10-12 20:39:45,851 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:07:28] 2025-10-12 20:39:45,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:07:28] 2025-10-12 20:39:45,857 [wrapper] pilotpid: 57743
[2025-10-12 23:07:28] 2025-10-12 20:39:45,860 [wrapper] Pilot exit status: 0
[2025-10-12 23:07:28] 2025-10-12 20:39:45,872 [wrapper] pandaids: 6838229515
[2025-10-12 23:07:28] 2025-10-12 20:39:46,032 [wrapper] cleanup supervisor_pilot  375637 57744
[2025-10-12 23:07:28] 2025-10-12 20:39:46,035 [wrapper] Test setup, not cleaning
[2025-10-12 23:07:28] 2025-10-12 20:39:46,038 [wrapper] apfmon messages muted
[2025-10-12 23:07:28] 2025-10-12 20:39:46,041 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:07:28] 2025-10-12 20:39:46,045 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:07:28]  *** Error codes and diagnostics ***
[2025-10-12 23:07:28]     "exeErrorCode": 0,
[2025-10-12 23:07:28]     "exeErrorDiag": "",
[2025-10-12 23:07:28]     "pilotErrorCode": 0,
[2025-10-12 23:07:28]     "pilotErrorDiag": "",
[2025-10-12 23:07:28]  *** Listing of results directory ***
[2025-10-12 23:07:28] total 411756
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc    557409 Oct 11 09:58 pilot3.tar.gz
[2025-10-12 23:07:28] -rwx------ 1 boinc boinc     36292 Oct 11 10:22 runpilot2-wrapper.sh
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc      5112 Oct 11 10:22 queuedata.json
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:07:28] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:08 run_atlas
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:08 job.xml
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc      6688 Oct 12 20:08 init_data.xml
[2025-10-12 23:07:28] -rw-r--r-- 2 boinc boinc 222988812 Oct 12 20:08 EVNT.46676267._002177.pool.root.1
[2025-10-12 23:07:28] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:08 start_atlas.sh
[2025-10-12 23:07:28] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:08 shared
[2025-10-12 23:07:28] -rw-r--r-- 2 boinc boinc    569681 Oct 12 20:08 input.tar.gz
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:08 boinc_lockfile
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc      2550 Oct 12 20:08 pandaJob.out
[2025-10-12 23:07:28] -rw------- 1 boinc boinc    975528 Oct 12 20:08 agis_schedconf.cvmfs.json
[2025-10-12 23:07:28] -rw------- 1 boinc boinc   1560580 Oct 12 20:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:07:28] drwx------ 5 boinc boinc      4096 Oct 12 20:08 pilot3
[2025-10-12 23:07:28] -rw------- 1 boinc boinc 191546719 Oct 12 22:38 HITS.46676269._054264.pool.root.1
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc       528 Oct 12 22:38 boinc_task_state.xml
[2025-10-12 23:07:28] -rw------- 1 boinc boinc      1024 Oct 12 22:38 memory_monitor_summary.json
[2025-10-12 23:07:28] -rw------- 1 boinc boinc        95 Oct 12 22:38 pilot_heartbeat.json
[2025-10-12 23:07:28] -rw------- 1 boinc boinc    325021 Oct 12 22:38 log.46676269._054264.job.log.tgz.1
[2025-10-12 23:07:28] -rw------- 1 boinc boinc      7781 Oct 12 22:39 heartbeat.json
[2025-10-12 23:07:28] -rw------- 1 boinc boinc      4833 Oct 12 22:39 pilotlog.txt
[2025-10-12 23:07:28] -rw------- 1 boinc boinc   1271215 Oct 12 22:39 log.46676269._054264.job.log.1
[2025-10-12 23:07:28] -rw------- 1 boinc boinc       357 Oct 12 22:39 output.list
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:39 runtime_log
[2025-10-12 23:07:28] -rw------- 1 boinc boinc   1617920 Oct 12 22:39 result.tar.gz
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc      9084 Oct 12 22:39 runtime_log.err
[2025-10-12 23:07:28] -rw------- 1 boinc boinc       662 Oct 12 22:39 E2cLDmC3jR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMYRMDmQiGeYm.diag
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc        26 Oct 12 23:07 wrapper_checkpoint.txt
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:07 boinc_mmap_file
[2025-10-12 23:07:28] -rw-r--r-- 1 boinc boinc     20646 Oct 12 23:07 stderr.txt
[2025-10-12 23:07:28] HITS file was successfully produced:
[2025-10-12 23:07:28] -rw------- 1 boinc boinc 191546719 Oct 12 22:38 shared/HITS.pool.root.1
[2025-10-12 23:07:28]  *** Contents of shared directory: ***
[2025-10-12 23:07:28] total 406988
[2025-10-12 23:07:28] -rw-r--r-- 2 boinc boinc 222988812 Oct 12 20:08 ATLAS.root_0
[2025-10-12 23:07:28] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:08 start_atlas.sh
[2025-10-12 23:07:28] -rw-r--r-- 2 boinc boinc    569681 Oct 12 20:08 input.tar.gz
[2025-10-12 23:07:28] -rw------- 1 boinc boinc 191546719 Oct 12 22:38 HITS.pool.root.1
[2025-10-12 23:07:28] -rw------- 1 boinc boinc   1617920 Oct 12 22:39 result.tar.gz
23:07:29 (32058): run_atlas exited; CPU time 35179.403736
23:07:29 (32058): called boinc_finish(0)

</stderr_txt>
]]>

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