Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:07:02 (1886602): wrapper (7.7.26015): starting
00:07:02 (1886602): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 00:07:02] Arguments: --nthreads 4
[2025-10-12 00:07:02] Threads: 4
[2025-10-12 00:07:02] Checking for CVMFS
[2025-10-12 00:07:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:07:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:07:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:07:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:07:02] 2.9.2.0 742250 3315 94944 151597 0 57 27927805 36864000 0 130560 0 2947740 99.992 115011 1074 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 00:07:02] CVMFS is ok
[2025-10-12 00:07:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:07:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:07:02] Further information can be found at the LHC@home message board.
[2025-10-12 00:07:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:07:02] Checking for apptainer binary...
[2025-10-12 00:07:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:07:02] Running /usr/bin/apptainer --version
[2025-10-12 00:07:02] apptainer version 1.4.1-1.1
[2025-10-12 00:07:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:07:02] thA381
[2025-10-12 00:07:02] apptainer works
[2025-10-12 00:07:02] Set ATHENA_PROC_NUMBER=4
[2025-10-12 00:07:02] Set ATHENA_CORE_NUMBER=4
[2025-10-12 00:07:02] Starting ATLAS job with PandaID=6838118302
[2025-10-12 00:07:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:17:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,139 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,140 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,140 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:17:21] 2025-10-11 23:16:47,140 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,140 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:17:21] 2025-10-11 23:16:47,140 | INFO     | job 6838118302 has completed (purged errors)
[2025-10-12 01:17:21] 2025-10-11 23:16:47,140 | INFO     | overall cleanup function is called
[2025-10-12 01:17:21] 2025-10-11 23:16:48,147 | INFO     | --- collectZombieJob: --- 10, [1896942]
[2025-10-12 01:17:21] 2025-10-11 23:16:48,147 | INFO     | zombie collector waiting for pid 1896942
[2025-10-12 01:17:21] 2025-10-11 23:16:48,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:17:21] 2025-10-11 23:16:48,147 | INFO     | collected zombie processes
[2025-10-12 01:17:21] 2025-10-11 23:16:48,147 | INFO     | will attempt to kill all subprocesses of pid=1896942
[2025-10-12 01:17:21] 2025-10-11 23:16:48,192 | INFO     | process IDs to be killed: [1896942] (in reverse order)
[2025-10-12 01:17:21] 2025-10-11 23:16:48,225 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:17:21] 2025-10-11 23:16:48,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:17:21] 2025-10-11 23:16:48,227 | INFO     | did not find any defunct processes belonging to 1896942
[2025-10-12 01:17:21] 2025-10-11 23:16:48,228 | INFO     | did not find any defunct processes belonging to 1896942
[2025-10-12 01:17:21] 2025-10-11 23:16:48,228 | INFO     | ready for new job
[2025-10-12 01:17:21] 2025-10-11 23:16:48,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:17:21] 2025-10-11 23:16:48,229 | INFO     | ***************************************
[2025-10-12 01:17:21] 2025-10-11 23:16:48,229 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:17:21] 2025-10-11 23:16:48,229 | INFO     | ***************************************
[2025-10-12 01:17:21] 2025-10-11 23:16:48,229 | INFO     | 
[2025-10-12 01:17:21] 2025-10-11 23:16:48,230 | INFO     | architecture information:
[2025-10-12 01:17:21] 2025-10-11 23:16:48,230 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:17:21] 2025-10-11 23:16:48,244 | INFO     | cat /etc/os-release:
[2025-10-12 01:17:21] NAME="CentOS Linux"
[2025-10-12 01:17:21] VERSION="7 (Core)"
[2025-10-12 01:17:21] ID="centos"
[2025-10-12 01:17:21] ID_LIKE="rhel fedora"
[2025-10-12 01:17:21] VERSION_ID="7"
[2025-10-12 01:17:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:17:21] ANSI_COLOR="0;31"
[2025-10-12 01:17:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:17:21] HOME_URL="https://www.centos.org/"
[2025-10-12 01:17:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:17:21] 
[2025-10-12 01:17:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:17:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:17:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:17:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:17:21] 
[2025-10-12 01:17:21] 2025-10-11 23:16:48,244 | INFO     | ***************************************
[2025-10-12 01:17:21] 2025-10-11 23:16:48,747 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | INFO     | sufficient remaining disk space (231408140288 B)
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | INFO     | update_server=False
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:17:21] 2025-10-11 23:16:48,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:17:21] 2025-10-11 23:16:48,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:17:21] 2025-10-11 23:16:48,833 | INFO     | all payload control threads have been joined
[2025-10-12 01:17:21] 2025-10-11 23:16:48,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:17:21] 2025-10-11 23:16:48,861 | INFO     | aborting loop
[2025-10-12 01:17:21] 2025-10-11 23:16:48,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:17:21] 2025-10-11 23:16:49,748 | INFO     | all data control threads have been joined
[2025-10-12 01:17:21] 2025-10-11 23:16:49,772 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:49,817 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:49,839 | INFO     | [payload] control thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:49,867 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:50,157 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:50,325 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:50,352 | INFO     | all job control threads have been joined
[2025-10-12 01:17:21] 2025-10-11 23:16:50,754 | INFO     | [data] control thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:50,772 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:50,805 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:51,125 | INFO     | [job] validate thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:51,174 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:51,222 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:51,358 | INFO     | [job] control thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:51,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:17:21] 2025-10-11 23:16:52,731 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:52,963 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:16:59,308 | INFO     | job.realtimelogging is not enabled
[2025-10-12 01:17:21] 2025-10-11 23:17:00,314 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:17:21] 2025-10-11 23:17:15,922 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:17:21] 2025-10-11 23:17:16,717 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987662546752)>', '<ExcThread(monitor, started 139986783422208)>']
[2025-10-12 01:17:21] 2025-10-11 23:17:16,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:17:21] 2025-10-11 23:17:16,913 | INFO     | [monitor] control thread has ended
[2025-10-12 01:17:21] 2025-10-11 23:17:21,738 | INFO     | all workflow threads have been joined
[2025-10-12 01:17:21] 2025-10-11 23:17:21,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:17:21] 2025-10-11 23:17:21,739 | INFO     | traces error code: 0
[2025-10-12 01:17:21] 2025-10-11 23:17:21,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:17:21] 2025-10-11 23:17:21,818 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:17:21] 2025-10-11 23:17:21,823 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:17:21] 2025-10-11 23:17:21,827 [wrapper] pilotpid: 1890389
[2025-10-12 01:17:21] 2025-10-11 23:17:21,831 [wrapper] Pilot exit status: 0
[2025-10-12 01:17:21] 2025-10-11 23:17:21,843 [wrapper] pandaids: 6838118302
[2025-10-12 01:17:21] 2025-10-11 23:17:21,865 [wrapper] cleanup supervisor_pilot 1906724 1890390
[2025-10-12 01:17:21] 2025-10-11 23:17:21,869 [wrapper] Test setup, not cleaning
[2025-10-12 01:17:21] 2025-10-11 23:17:21,873 [wrapper] apfmon messages muted
[2025-10-12 01:17:21] 2025-10-11 23:17:21,877 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:17:21] 2025-10-11 23:17:21,880 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:17:21]  *** Error codes and diagnostics ***
[2025-10-12 01:17:21]     "exeErrorCode": 0,
[2025-10-12 01:17:21]     "exeErrorDiag": "",
[2025-10-12 01:17:21]     "pilotErrorCode": 0,
[2025-10-12 01:17:21]     "pilotErrorDiag": "",
[2025-10-12 01:17:21]  *** Listing of results directory ***
[2025-10-12 01:17:21] total 402880
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc    557409 Oct 11 07:36 pilot3.tar.gz
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc      5112 Oct 11 07:46 queuedata.json
[2025-10-12 01:17:21] -rwx------ 1 boinc boinc     36292 Oct 11 07:46 runpilot2-wrapper.sh
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc       100 Oct 12 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:17:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 00:07 run_atlas
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc       105 Oct 12 00:07 job.xml
[2025-10-12 01:17:21] -rw-r--r-- 2 boinc boinc 220262281 Oct 12 00:07 EVNT.46676267._002097.pool.root.1
[2025-10-12 01:17:21] -rw-r--r-- 2 boinc boinc    569679 Oct 12 00:07 input.tar.gz
[2025-10-12 01:17:21] -rw-r--r-- 2 boinc boinc     15120 Oct 12 00:07 start_atlas.sh
[2025-10-12 01:17:21] drwxrwx--x 2 boinc boinc      4096 Oct 12 00:07 shared
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc         0 Oct 12 00:07 boinc_setup_complete
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc      6375 Oct 12 00:07 init_data.xml
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc         0 Oct 12 00:07 boinc_lockfile
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc      2550 Oct 12 00:07 pandaJob.out
[2025-10-12 01:17:21] -rw------- 1 boinc boinc    975528 Oct 12 00:07 agis_schedconf.cvmfs.json
[2025-10-12 01:17:21] -rw------- 1 boinc boinc   1560580 Oct 12 00:07 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:17:21] drwx------ 5 boinc boinc      4096 Oct 12 00:07 pilot3
[2025-10-12 01:17:21] -rw------- 1 boinc boinc 186603970 Oct 12 01:16 HITS.46676269._052189.pool.root.1
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc       529 Oct 12 01:16 boinc_task_state.xml
[2025-10-12 01:17:21] -rw------- 1 boinc boinc        95 Oct 12 01:16 pilot_heartbeat.json
[2025-10-12 01:17:21] -rw------- 1 boinc boinc      1023 Oct 12 01:16 memory_monitor_summary.json
[2025-10-12 01:17:21] -rw------- 1 boinc boinc    270418 Oct 12 01:16 log.46676269._052189.job.log.tgz.1
[2025-10-12 01:17:21] -rw------- 1 boinc boinc      7776 Oct 12 01:16 heartbeat.json
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc        27 Oct 12 01:17 wrapper_checkpoint.txt
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc      8192 Oct 12 01:17 boinc_mmap_file
[2025-10-12 01:17:21] -rw------- 1 boinc boinc      4628 Oct 12 01:17 pilotlog.txt
[2025-10-12 01:17:21] -rw------- 1 boinc boinc    620833 Oct 12 01:17 log.46676269._052189.job.log.1
[2025-10-12 01:17:21] -rw------- 1 boinc boinc       357 Oct 12 01:17 output.list
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc       620 Oct 12 01:17 runtime_log
[2025-10-12 01:17:21] -rw------- 1 boinc boinc    911360 Oct 12 01:17 result.tar.gz
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc      8777 Oct 12 01:17 runtime_log.err
[2025-10-12 01:17:21] -rw------- 1 boinc boinc       658 Oct 12 01:17 aZpKDm0bhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwXfNDmStOTFn.diag
[2025-10-12 01:17:21] -rw-r--r-- 1 boinc boinc     12563 Oct 12 01:17 stderr.txt
[2025-10-12 01:17:21] HITS file was successfully produced:
[2025-10-12 01:17:21] -rw------- 1 boinc boinc 186603970 Oct 12 01:16 shared/HITS.pool.root.1
[2025-10-12 01:17:21]  *** Contents of shared directory: ***
[2025-10-12 01:17:21] total 398808
[2025-10-12 01:17:21] -rw-r--r-- 2 boinc boinc 220262281 Oct 12 00:07 ATLAS.root_0
[2025-10-12 01:17:21] -rw-r--r-- 2 boinc boinc    569679 Oct 12 00:07 input.tar.gz
[2025-10-12 01:17:21] -rw-r--r-- 2 boinc boinc     15120 Oct 12 00:07 start_atlas.sh
[2025-10-12 01:17:21] -rw------- 1 boinc boinc 186603970 Oct 12 01:16 HITS.pool.root.1
[2025-10-12 01:17:21] -rw------- 1 boinc boinc    911360 Oct 12 01:17 result.tar.gz
01:17:23 (1886602): run_atlas exited; CPU time 15652.852306
01:17:23 (1886602): called boinc_finish(0)

</stderr_txt>
]]>

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