Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:09:01 (22778): wrapper (7.7.26015): starting
09:09:01 (22778): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 09:09:01] Arguments: --nthreads 8
[2025-10-11 09:09:01] Threads: 8
[2025-10-11 09:09:01] Checking for CVMFS
[2025-10-11 09:09:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 09:09:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 09:09:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 09:09:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 09:09:02] 2.11.2.0 2866 7099 74396 151584 1 59 13129165 20275201 1 130560 0 4236328 99.989 234851 36529 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 09:09:02] CVMFS is ok
[2025-10-11 09:09:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 09:09:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 09:09:02] Further information can be found at the LHC@home message board.
[2025-10-11 09:09:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 09:09:02] Checking for apptainer binary...
[2025-10-11 09:09:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 09:09:02] Running /usr/bin/apptainer --version
[2025-10-11 09:09:02] apptainer version 1.3.2-1.el7
[2025-10-11 09:09:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 09:09:03] c-204-35.aglt2.org
[2025-10-11 09:09:03] apptainer works
[2025-10-11 09:09:03] Set ATHENA_PROC_NUMBER=8
[2025-10-11 09:09:03] Set ATHENA_CORE_NUMBER=8
[2025-10-11 09:09:03] Starting ATLAS job with PandaID=6838200070
[2025-10-11 09:09:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 11:08:39]  *** The last 200 lines of the pilot log: ***
[2025-10-11 11:08:39] 2025-10-11 15:07:36,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 11:08:39] 2025-10-11 15:07:36,989 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 11:08:39] 2025-10-11 15:07:36,990 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 11:08:39] 2025-10-11 15:07:36,993 | INFO     | fitting pss+swap vs Time
[2025-10-11 11:08:39] 2025-10-11 15:07:36,993 | INFO     | sum of square deviations: 483971865.0
[2025-10-11 11:08:39] 2025-10-11 15:07:36,994 | INFO     | sum of deviations: 17682475863.499996
[2025-10-11 11:08:39] 2025-10-11 15:07:36,994 | INFO     | mean x: 1760191699.5
[2025-10-11 11:08:39] 2025-10-11 15:07:36,994 | INFO     | mean y: 2486810.7327586208
[2025-10-11 11:08:39] 2025-10-11 15:07:36,994 | INFO     | -- intersect: -64308167366.53391
[2025-10-11 11:08:39] 2025-10-11 15:07:36,994 | INFO     | intersect: -64308167366.53391
[2025-10-11 11:08:39] 2025-10-11 15:07:36,995 | INFO     | chi2: 1.4899007132959112
[2025-10-11 11:08:39] 2025-10-11 15:07:36,995 | INFO     | sum of square deviations: 424045160.0
[2025-10-11 11:08:39] 2025-10-11 15:07:36,995 | INFO     | sum of deviations: 16928564938.000008
[2025-10-11 11:08:39] 2025-10-11 15:07:36,996 | INFO     | mean x: 1760191547.0
[2025-10-11 11:08:39] 2025-10-11 15:07:36,996 | INFO     | mean y: 2484894.081081081
[2025-10-11 11:08:39] 2025-10-11 15:07:36,996 | INFO     | -- intersect: -70267193238.09755
[2025-10-11 11:08:39] 2025-10-11 15:07:36,996 | INFO     | intersect: -70267193238.09755
[2025-10-11 11:08:39] 2025-10-11 15:07:36,996 | INFO     | chi2: 1.4914040318717499
[2025-10-11 11:08:39] 2025-10-11 15:07:36,996 | INFO     | current chi2=1.4914040318717499 (change=-0.100900587698427 %)
[2025-10-11 11:08:39] 2025-10-11 15:07:36,996 | INFO     | right removable region: 110
[2025-10-11 11:08:39] 2025-10-11 15:07:36,997 | INFO     | sum of square deviations: 424045160.0
[2025-10-11 11:08:39] 2025-10-11 15:07:36,997 | INFO     | sum of deviations: -164543840.0000002
[2025-10-11 11:08:39] 2025-10-11 15:07:36,997 | INFO     | mean x: 1760191852.0
[2025-10-11 11:08:39] 2025-10-11 15:07:36,998 | INFO     | mean y: 2531384.2702702703
[2025-10-11 11:08:39] 2025-10-11 15:07:36,998 | INFO     | -- intersect: 685545255.8701537
[2025-10-11 11:08:39] 2025-10-11 15:07:36,998 | INFO     | intersect: 685545255.8701537
[2025-10-11 11:08:39] 2025-10-11 15:07:36,998 | INFO     | chi2: 0.03226613773886648
[2025-10-11 11:08:39] 2025-10-11 15:07:36,998 | INFO     | current chi2=0.03226613773886648 (change=97.83434309072258 %)
[2025-10-11 11:08:39] 2025-10-11 15:07:36,998 | INFO     | sum of square deviations: 369281342.5
[2025-10-11 11:08:39] 2025-10-11 15:07:36,999 | INFO     | sum of deviations: -2056455180.0000033
[2025-10-11 11:08:39] 2025-10-11 15:07:36,999 | INFO     | mean x: 1760192004.5
[2025-10-11 11:08:39] 2025-10-11 15:07:36,999 | INFO     | mean y: 2536520.037735849
[2025-10-11 11:08:39] 2025-10-11 15:07:36,999 | INFO     | -- intersect: 9804699664.655891
[2025-10-11 11:08:39] 2025-10-11 15:07:36,999 | INFO     | intersect: 9804699664.655891
[2025-10-11 11:08:39] 2025-10-11 15:07:37,000 | INFO     | chi2: 0.003987186478008398
[2025-10-11 11:08:39] 2025-10-11 15:07:37,000 | INFO     | current chi2=0.003987186478008398 (change=87.64281454980095 %)
[2025-10-11 11:08:39] 2025-10-11 15:07:37,000 | INFO     | sum of square deviations: 319447850.0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,000 | INFO     | sum of deviations: -2153193128.0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,001 | INFO     | mean x: 1760192157.0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,001 | INFO     | mean y: 2536806.118811881
[2025-10-11 11:08:39] 2025-10-11 15:07:37,001 | INFO     | -- intersect: 11866863507.368788
[2025-10-11 11:08:39] 2025-10-11 15:07:37,001 | INFO     | intersect: 11866863507.368788
[2025-10-11 11:08:39] 2025-10-11 15:07:37,001 | INFO     | chi2: 0.0034345929002734584
[2025-10-11 11:08:39] 2025-10-11 15:07:37,001 | INFO     | current chi2=0.0034345929002734584 (change=13.859235849208645 %)
[2025-10-11 11:08:39] 2025-10-11 15:07:37,001 | INFO     | left removable region: 30
[2025-10-11 11:08:39] 2025-10-11 15:07:37,002 | INFO     | sum of square deviations: 158737860.0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,002 | INFO     | sum of deviations: -1635406706.0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,002 | INFO     | mean x: 1760192431.5
[2025-10-11 11:08:39] 2025-10-11 15:07:37,002 | INFO     | mean y: 2535621.05
[2025-10-11 11:08:39] 2025-10-11 15:07:37,002 | INFO     | -- intersect: 18137027961.60156
[2025-10-11 11:08:39] 2025-10-11 15:07:37,002 | INFO     | intersect: 18137027961.60156
[2025-10-11 11:08:39] 2025-10-11 15:07:37,003 | INFO     | chi2: 0.00274329131779258
[2025-10-11 11:08:39] 2025-10-11 15:07:37,003 | INFO     | -- intersect: 18137027961.60156
[2025-10-11 11:08:39] 2025-10-11 15:07:37,003 | INFO     | current memory leak: -10.30 B/s (using 80 data points, chi2=0.00)
[2025-10-11 11:08:39] 2025-10-11 15:07:37,003 | INFO     | could have reported an average CPU frequency of 1957 MHz (7 samples)
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | ..............................
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . Timing measurements:
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . get job = 0 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . initial setup = 2 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . payload setup = 8 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . stage-in = 0 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . payload execution = 7055 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . stage-out = 0 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,004 | INFO     | . log creation = 0 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,005 | INFO     | ..............................
[2025-10-11 11:08:39] 2025-10-11 15:07:37,098 | INFO     | 
[2025-10-11 11:08:39] 2025-10-11 15:07:37,098 | INFO     | job summary report
[2025-10-11 11:08:39] 2025-10-11 15:07:37,098 | INFO     | --------------------------------------------------
[2025-10-11 11:08:39] 2025-10-11 15:07:37,098 | INFO     | PanDA job id: 6838200070
[2025-10-11 11:08:39] 2025-10-11 15:07:37,098 | INFO     | task id: 46676269
[2025-10-11 11:08:39] 2025-10-11 15:07:37,099 | INFO     | errors: (none)
[2025-10-11 11:08:39] 2025-10-11 15:07:37,099 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 11:08:39] 2025-10-11 15:07:37,099 | INFO     | pilot state: finished 
[2025-10-11 11:08:39] 2025-10-11 15:07:37,099 | INFO     | transexitcode: 0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,099 | INFO     | exeerrorcode: 0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,099 | INFO     | exeerrordiag: 
[2025-10-11 11:08:39] 2025-10-11 15:07:37,100 | INFO     | exitcode: 0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,100 | INFO     | exitmsg: OK
[2025-10-11 11:08:39] 2025-10-11 15:07:37,100 | INFO     | cpuconsumptiontime: 52482 s
[2025-10-11 11:08:39] 2025-10-11 15:07:37,100 | INFO     | nevents: 400
[2025-10-11 11:08:39] 2025-10-11 15:07:37,100 | INFO     | neventsw: 0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,100 | INFO     | pid: 332
[2025-10-11 11:08:39] 2025-10-11 15:07:37,101 | INFO     | pgrp: 332
[2025-10-11 11:08:39] 2025-10-11 15:07:37,101 | INFO     | corecount: 8
[2025-10-11 11:08:39] 2025-10-11 15:07:37,101 | INFO     | event service: False
[2025-10-11 11:08:39] 2025-10-11 15:07:37,101 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 7067: 2376371, 7068: 2385369, 7072: 2385425, 7079: 2385747}
[2025-10-11 11:08:39] 2025-10-11 15:07:37,101 | INFO     | --------------------------------------------------
[2025-10-11 11:08:39] 2025-10-11 15:07:37,101 | INFO     | 
[2025-10-11 11:08:39] 2025-10-11 15:07:37,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 11:08:39] 2025-10-11 15:07:37,131 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,131 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,131 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,131 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,132 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,132 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,132 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,132 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,132 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,133 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,133 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,133 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,133 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,133 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,133 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,134 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,134 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,134 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 11:08:39] 2025-10-11 15:07:37,134 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,134 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 11:08:39] 2025-10-11 15:07:37,135 | INFO     | job 6838200070 has completed (purged errors)
[2025-10-11 11:08:39] 2025-10-11 15:07:37,135 | INFO     | overall cleanup function is called
[2025-10-11 11:08:39] 2025-10-11 15:07:38,143 | INFO     | --- collectZombieJob: --- 10, [332]
[2025-10-11 11:08:39] 2025-10-11 15:07:38,143 | INFO     | zombie collector waiting for pid 332
[2025-10-11 11:08:39] 2025-10-11 15:07:38,150 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 11:08:39] 2025-10-11 15:07:38,150 | INFO     | collected zombie processes
[2025-10-11 11:08:39] 2025-10-11 15:07:38,150 | INFO     | will attempt to kill all subprocesses of pid=332
[2025-10-11 11:08:39] 2025-10-11 15:07:38,239 | INFO     | process IDs to be killed: [332] (in reverse order)
[2025-10-11 11:08:39] 2025-10-11 15:07:38,297 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 11:08:39] 2025-10-11 15:07:38,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 11:08:39] 2025-10-11 15:07:38,302 | INFO     | did not find any defunct processes belonging to 332
[2025-10-11 11:08:39] 2025-10-11 15:07:38,305 | INFO     | did not find any defunct processes belonging to 332
[2025-10-11 11:08:39] 2025-10-11 15:07:38,305 | INFO     | ready for new job
[2025-10-11 11:08:39] 2025-10-11 15:07:38,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 11:08:39] 2025-10-11 15:07:38,307 | INFO     | ***************************************
[2025-10-11 11:08:39] 2025-10-11 15:07:38,307 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 11:08:39] 2025-10-11 15:07:38,307 | INFO     | ***************************************
[2025-10-11 11:08:39] 2025-10-11 15:07:38,307 | INFO     | 
[2025-10-11 11:08:39] 2025-10-11 15:07:38,308 | INFO     | architecture information:
[2025-10-11 11:08:39] 2025-10-11 15:07:38,308 | INFO     | executing command: cat /etc/os-release
[2025-10-11 11:08:39] 2025-10-11 15:07:38,328 | INFO     | cat /etc/os-release:
[2025-10-11 11:08:39] NAME="CentOS Linux"
[2025-10-11 11:08:39] VERSION="7 (Core)"
[2025-10-11 11:08:39] ID="centos"
[2025-10-11 11:08:39] ID_LIKE="rhel fedora"
[2025-10-11 11:08:39] VERSION_ID="7"
[2025-10-11 11:08:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 11:08:39] ANSI_COLOR="0;31"
[2025-10-11 11:08:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 11:08:39] HOME_URL="https://www.centos.org/"
[2025-10-11 11:08:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 11:08:39] 
[2025-10-11 11:08:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 11:08:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 11:08:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 11:08:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 11:08:39] 
[2025-10-11 11:08:39] 2025-10-11 15:07:38,328 | INFO     | ***************************************
[2025-10-11 11:08:39] 2025-10-11 15:07:38,832 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 11:08:39] 2025-10-11 15:07:38,851 | INFO     | sufficient remaining disk space (18561892352 B)
[2025-10-11 11:08:39] 2025-10-11 15:07:38,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 11:08:39] 2025-10-11 15:07:38,852 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 11:08:39] 2025-10-11 15:07:38,852 | INFO     | update_server=False
[2025-10-11 11:08:39] 2025-10-11 15:07:38,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 11:08:39] 2025-10-11 15:07:38,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:08:39] 2025-10-11 15:07:38,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:08:39] 2025-10-11 15:07:38,854 | INFO     | aborting loop
[2025-10-11 11:08:39] 2025-10-11 15:07:39,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 11:08:39] 2025-10-11 15:07:39,207 | INFO     | all job control threads have been joined
[2025-10-11 11:08:39] 2025-10-11 15:07:39,857 | INFO     | [job] queue monitor thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:39,858 | INFO     | [job] retrieve thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:39,859 | INFO     | [job] job monitor thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:39,909 | INFO     | all data control threads have been joined
[2025-10-11 11:08:39] 2025-10-11 15:07:40,077 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:40,144 | INFO     | [data] copytool_in thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:40,186 | INFO     | all payload control threads have been joined
[2025-10-11 11:08:39] 2025-10-11 15:07:40,213 | INFO     | [job] control thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:40,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 11:08:39] 2025-10-11 15:07:40,304 | INFO     | [payload] failed_post thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:40,589 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:40,589 | INFO     | [payload] validate_post thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:40,914 | INFO     | [data] control thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:41,076 | INFO     | [job] validate thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:41,139 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:41,143 | INFO     | [data] copytool_out thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:41,188 | INFO     | [payload] control thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:44,220 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:07:49,683 | INFO     | job.realtimelogging is not enabled
[2025-10-11 11:08:39] 2025-10-11 15:07:50,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 11:08:39] 2025-10-11 15:08:08,680 | INFO     | PID=26448 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 11:08:39] 2025-10-11 15:08:08,681 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 11:08:39] 2025-10-11 15:08:08,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 11:08:39] 2025-10-11 15:08:08,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 11:08:39] 2025-10-11 15:08:32,279 | INFO     | [monitor] cgroup control has ended
[2025-10-11 11:08:39] 2025-10-11 15:08:33,915 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940456437568)>', '<ExcThread(monitor, started 139939345848064)>']
[2025-10-11 11:08:39] 2025-10-11 15:08:34,796 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 11:08:39] 2025-10-11 15:08:34,797 | INFO     | [monitor] control thread has ended
[2025-10-11 11:08:39] 2025-10-11 15:08:38,939 | INFO     | all workflow threads have been joined
[2025-10-11 11:08:39] 2025-10-11 15:08:38,939 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 11:08:39] 2025-10-11 15:08:38,940 | INFO     | traces error code: 0
[2025-10-11 11:08:39] 2025-10-11 15:08:38,940 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 11:08:39] 2025-10-11 15:08:39,050 [wrapper] ==== pilot stdout END ====
[2025-10-11 11:08:39] 2025-10-11 15:08:39,054 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 11:08:39] 2025-10-11 15:08:39,059 [wrapper] pilotpid: 26448
[2025-10-11 11:08:39] 2025-10-11 15:08:39,064 [wrapper] Pilot exit status: 0
[2025-10-11 11:08:39] 2025-10-11 15:08:39,082 [wrapper] pandaids: 6838200070
[2025-10-11 11:08:39] 2025-10-11 15:08:39,133 [wrapper] cleanup supervisor_pilot  9786 26449
[2025-10-11 11:08:39] 2025-10-11 15:08:39,138 [wrapper] Test setup, not cleaning
[2025-10-11 11:08:39] 2025-10-11 15:08:39,142 [wrapper] apfmon messages muted
[2025-10-11 11:08:39] 2025-10-11 15:08:39,146 [wrapper] ==== wrapper stdout END ====
[2025-10-11 11:08:39] 2025-10-11 15:08:39,151 [wrapper] ==== wrapper stderr END ====
[2025-10-11 11:08:39]  *** Error codes and diagnostics ***
[2025-10-11 11:08:39]     "exeErrorCode": 0,
[2025-10-11 11:08:39]     "exeErrorDiag": "",
[2025-10-11 11:08:39]     "pilotErrorCode": 0,
[2025-10-11 11:08:39]     "pilotErrorDiag": "",
[2025-10-11 11:08:39]  *** Listing of results directory ***
[2025-10-11 11:08:39] total 407036
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 03:43 pilot3.tar.gz
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 03:48 queuedata.json
[2025-10-11 11:08:39] -rwx------ 1 boincer umatlas     36292 Oct 11 03:49 runpilot2-wrapper.sh
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas       100 Oct 11 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 11:08:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 09:09 run_atlas
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas       105 Oct 11 09:09 job.xml
[2025-10-11 11:08:39] -rw-r--r-- 2 boincer umatlas 220528179 Oct 11 09:09 EVNT.46676267._002160.pool.root.1
[2025-10-11 11:08:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 09:09 start_atlas.sh
[2025-10-11 11:08:39] drwxrwx--x 2 boincer umatlas      4096 Oct 11 09:09 shared
[2025-10-11 11:08:39] -rw-r--r-- 2 boincer umatlas    569685 Oct 11 09:09 input.tar.gz
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas         0 Oct 11 09:09 boinc_lockfile
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 09:09 pandaJob.out
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas    975504 Oct 11 09:09 agis_schedconf.cvmfs.json
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas   1560580 Oct 11 09:09 agis_ddmendpoints.agis.ALL.json
[2025-10-11 11:08:39] drwx------ 5 boincer umatlas      4096 Oct 11 09:09 pilot3
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas      5909 Oct 11 11:04 init_data.xml
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas 189666566 Oct 11 11:06 HITS.46676269._053821.pool.root.1
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas       529 Oct 11 11:06 boinc_task_state.xml
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas      1063 Oct 11 11:07 memory_monitor_summary.json
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas    355842 Oct 11 11:07 log.46676269._053821.job.log.tgz.1
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas      7850 Oct 11 11:07 heartbeat.json
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas        95 Oct 11 11:08 pilot_heartbeat.json
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 11:08 boinc_mmap_file
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas        27 Oct 11 11:08 wrapper_checkpoint.txt
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas      4818 Oct 11 11:08 pilotlog.txt
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas    998364 Oct 11 11:08 log.46676269._053821.job.log.1
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas       357 Oct 11 11:08 output.list
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas       620 Oct 11 11:08 runtime_log
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas   1372160 Oct 11 11:08 result.tar.gz
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 11:08 runtime_log.err
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas       659 Oct 11 11:08 0qjMDmPXjR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRofNDmKnr8bm.diag
[2025-10-11 11:08:39] -rw-r--r-- 1 boincer umatlas     20826 Oct 11 11:08 stderr.txt
[2025-10-11 11:08:39] HITS file was successfully produced:
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas 189666566 Oct 11 11:06 shared/HITS.pool.root.1
[2025-10-11 11:08:39]  *** Contents of shared directory: ***
[2025-10-11 11:08:39] total 402508
[2025-10-11 11:08:39] -rw-r--r-- 2 boincer umatlas 220528179 Oct 11 09:09 ATLAS.root_0
[2025-10-11 11:08:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 09:09 start_atlas.sh
[2025-10-11 11:08:39] -rw-r--r-- 2 boincer umatlas    569685 Oct 11 09:09 input.tar.gz
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas 189666566 Oct 11 11:06 HITS.pool.root.1
[2025-10-11 11:08:39] -rw------- 1 boincer umatlas   1372160 Oct 11 11:08 result.tar.gz
11:08:40 (22778): run_atlas exited; CPU time 52494.746578
11:08:40 (22778): called boinc_finish(0)

</stderr_txt>
]]>

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