Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:18:41 (2855688): wrapper (7.7.26015): starting
13:18:41 (2855688): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 13:18:41] Arguments: --nthreads 12
[2025-10-11 13:18:41] Threads: 12
[2025-10-11 13:18:41] Checking for CVMFS
[2025-10-11 13:18:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 13:18:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 13:18:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 13:18:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 13:18:42] 2.13.2.0 3843265 3314 57924 151593 2 57 3244821 6144001 3668 130560 0 19676023 99.998 234918 476 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 13:18:42] CVMFS is ok
[2025-10-11 13:18:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 13:18:42] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 13:18:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 13:18:42] Further information can be found at the LHC@home message board.
[2025-10-11 13:18:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 13:18:42] Checking for apptainer binary...
[2025-10-11 13:18:42] apptainer is not installed, using version from CVMFS
[2025-10-11 13:18:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 13:18:43] XeonFire
[2025-10-11 13:18:43] apptainer works
[2025-10-11 13:18:43] Set ATHENA_PROC_NUMBER=12
[2025-10-11 13:18:43] Set ATHENA_CORE_NUMBER=12
[2025-10-11 13:18:43] Starting ATLAS job with PandaID=6838066345
[2025-10-11 13:18:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 14:14:24]  *** The last 200 lines of the pilot log: ***
[2025-10-11 14:14:24] 2025-10-11 19:13:18,201 | INFO     |  -- lfn=log.46676269._050882.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 14:14:24] 2025-10-11 19:13:18,201 | INFO     | stage-out finished correctly
[2025-10-11 14:14:24] 2025-10-11 19:13:18,557 | WARNING  | process 2866791 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 14:14:24] 2025-10-11 19:13:18,557 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6838066345/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:14:24] 2025-10-11 19:13:18,995 | INFO     | number of running child processes to parent process 2866791: 1
[2025-10-11 14:14:24] 2025-10-11 19:13:18,996 | INFO     | maximum number of monitored processes: 6
[2025-10-11 14:14:24] 2025-10-11 19:13:19,335 | INFO     | time since job start (3246s) is within the limit (172800.0s)
[2025-10-11 14:14:24] 2025-10-11 19:13:21,340 | INFO     | time since job start (3248s) is within the limit (172800.0s)
[2025-10-11 14:14:24] 2025-10-11 19:13:21,499 | INFO     | monitor loop #239: job 0:6838066345 is in state 'finished'
[2025-10-11 14:14:24] 2025-10-11 19:13:21,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:14:24] 2025-10-11 19:13:21,558 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 14:14:24] 2025-10-11 19:13:22,868 | INFO     | PID=2859759 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 14:14:24] 2025-10-11 19:13:22,869 | INFO     | .. there are 5 such processes running
[2025-10-11 14:14:24] 2025-10-11 19:13:23,869 | INFO     | time since job start (3250s) is within the limit (172800.0s)
[2025-10-11 14:14:24] 2025-10-11 19:13:23,877 | INFO     | job 6838066345 has state=finished
[2025-10-11 14:14:24] 2025-10-11 19:13:23,877 | INFO     | preparing for final server update for job 6838066345 in state='finished'
[2025-10-11 14:14:24] 2025-10-11 19:13:23,878 | INFO     | this job has now completed (state=finished)
[2025-10-11 14:14:24] 2025-10-11 19:13:23,878 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 14:14:24] 2025-10-11 19:13:23,878 | INFO     | log transfer has been attempted: DONE
[2025-10-11 14:14:24] 2025-10-11 19:13:23,878 | INFO     | job 6838066345 has finished - writing final server update
[2025-10-11 14:14:24] 2025-10-11 19:13:23,878 | INFO     | total number of processed events: 400 (read)
[2025-10-11 14:14:24] 2025-10-11 19:13:23,880 | INFO     | executing command: lscpu
[2025-10-11 14:14:24] 2025-10-11 19:13:23,954 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 14:14:24] 2025-10-11 19:13:24,002 | INFO     | monitor loop #240: job 0:6838066345 is in state 'finished'
[2025-10-11 14:14:24] 2025-10-11 19:13:24,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:14:24] 2025-10-11 19:13:25,875 | INFO     | time since job start (3252s) is within the limit (172800.0s)
[2025-10-11 14:14:24] 2025-10-11 19:13:26,506 | INFO     | monitor loop #241: job 0:6838066345 is in state 'finished'
[2025-10-11 14:14:24] 2025-10-11 19:13:26,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:14:24] 2025-10-11 19:13:27,881 | INFO     | time since job start (3254s) is within the limit (172800.0s)
[2025-10-11 14:14:24] 2025-10-11 19:13:29,009 | INFO     | monitor loop #242: job 0:6838066345 is in state 'finished'
[2025-10-11 14:14:24] 2025-10-11 19:13:29,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:14:24] 2025-10-11 19:13:29,887 | INFO     | time since job start (3256s) is within the limit (172800.0s)
[2025-10-11 14:14:24] 2025-10-11 19:13:31,512 | INFO     | monitor loop #243: job 0:6838066345 is in state 'finished'
[2025-10-11 14:14:24] 2025-10-11 19:13:31,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 14:14:24] 2025-10-11 19:13:31,892 | INFO     | time since job start (3258s) is within the limit (172800.0s)
[2025-10-11 14:14:24] 2025-10-11 19:13:33,190 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 14:14:24] 2025-10-11 19:13:33,207 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2259.340375
[2025-10-11 14:14:24] 2025-10-11 19:13:33,224 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6838066345/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:14:24] 2025-10-11 19:13:33,225 | INFO     | extracted standard info from prmon json
[2025-10-11 14:14:24] 2025-10-11 19:13:33,225 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 14:14:24] 2025-10-11 19:13:33,226 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 14:14:24] 2025-10-11 19:13:33,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 14:14:24] 2025-10-11 19:13:33,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 14:14:24] 2025-10-11 19:13:33,228 | INFO     | fitting pss+swap vs Time
[2025-10-11 14:14:24] 2025-10-11 19:13:33,229 | INFO     | sum of square deviations: 30168007.5
[2025-10-11 14:14:24] 2025-10-11 19:13:33,229 | INFO     | sum of deviations: -1192135871.0000002
[2025-10-11 14:14:24] 2025-10-11 19:13:33,229 | INFO     | mean x: 1760208458.5
[2025-10-11 14:14:24] 2025-10-11 19:13:33,229 | INFO     | mean y: 2785915.304347826
[2025-10-11 14:14:24] 2025-10-11 19:13:33,230 | INFO     | -- intersect: 69560168643.19798
[2025-10-11 14:14:24] 2025-10-11 19:13:33,230 | INFO     | intersect: 69560168643.19798
[2025-10-11 14:14:24] 2025-10-11 19:13:33,230 | INFO     | chi2: 0.01276746026723465
[2025-10-11 14:14:24] 2025-10-11 19:13:33,230 | INFO     | -- intersect: 69560168643.19798
[2025-10-11 14:14:24] 2025-10-11 19:13:33,230 | INFO     | current memory leak: -39.52 B/s (using 46 data points, chi2=0.01)
[2025-10-11 14:14:24] 2025-10-11 19:13:33,230 | INFO     | could have reported an average CPU frequency of 2364 MHz (5 samples)
[2025-10-11 14:14:24] 2025-10-11 19:13:33,231 | INFO     | ..............................
[2025-10-11 14:14:24] 2025-10-11 19:13:33,231 | INFO     | . Timing measurements:
[2025-10-11 14:14:24] 2025-10-11 19:13:33,231 | INFO     | . get job = 0 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,231 | INFO     | . initial setup = 18 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,231 | INFO     | . payload setup = 6 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,231 | INFO     | . stage-in = 0 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,231 | INFO     | . payload execution = 3217 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,232 | INFO     | . stage-out = 0 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,232 | INFO     | . log creation = 0 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,232 | INFO     | ..............................
[2025-10-11 14:14:24] 2025-10-11 19:13:33,556 | INFO     | 
[2025-10-11 14:14:24] 2025-10-11 19:13:33,556 | INFO     | job summary report
[2025-10-11 14:14:24] 2025-10-11 19:13:33,556 | INFO     | --------------------------------------------------
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | PanDA job id: 6838066345
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | task id: 46676269
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | errors: (none)
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | pilot state: finished 
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | transexitcode: 0
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | exeerrorcode: 0
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | exeerrordiag: 
[2025-10-11 14:14:24] 2025-10-11 19:13:33,557 | INFO     | exitcode: 0
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | exitmsg: OK
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | cpuconsumptiontime: 34027 s
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | nevents: 400
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | neventsw: 0
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | pid: 2866791
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | pgrp: 2866791
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | corecount: 12
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | event service: False
[2025-10-11 14:14:24] 2025-10-11 19:13:33,558 | INFO     | sizes: {0: 2348694, 1: 2348893, 6: 2349155, 12: 2349183, 3227: 2374524, 3228: 2374523, 3229: 2383719, 3233: 2383775, 3244: 2384001}
[2025-10-11 14:14:24] 2025-10-11 19:13:33,559 | INFO     | --------------------------------------------------
[2025-10-11 14:14:24] 2025-10-11 19:13:33,559 | INFO     | 
[2025-10-11 14:14:24] 2025-10-11 19:13:33,559 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-10-11 14:14:24] 2025-10-11 19:13:33,584 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,584 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,584 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,584 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 14:14:24] 2025-10-11 19:13:33,586 | INFO     | job 6838066345 has completed (purged errors)
[2025-10-11 14:14:24] 2025-10-11 19:13:33,587 | INFO     | overall cleanup function is called
[2025-10-11 14:14:24] 2025-10-11 19:13:34,595 | INFO     | --- collectZombieJob: --- 10, [2866791]
[2025-10-11 14:14:24] 2025-10-11 19:13:34,595 | INFO     | zombie collector waiting for pid 2866791
[2025-10-11 14:14:24] 2025-10-11 19:13:34,595 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 14:14:24] 2025-10-11 19:13:34,596 | INFO     | collected zombie processes
[2025-10-11 14:14:24] 2025-10-11 19:13:34,596 | INFO     | will attempt to kill all subprocesses of pid=2866791
[2025-10-11 14:14:24] 2025-10-11 19:13:35,058 | INFO     | process IDs to be killed: [2866791] (in reverse order)
[2025-10-11 14:14:24] 2025-10-11 19:13:35,188 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 14:14:24] 2025-10-11 19:13:35,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 14:14:24] 2025-10-11 19:13:35,199 | INFO     | did not find any defunct processes belonging to 2866791
[2025-10-11 14:14:24] 2025-10-11 19:13:35,207 | INFO     | did not find any defunct processes belonging to 2866791
[2025-10-11 14:14:24] 2025-10-11 19:13:35,208 | INFO     | ready for new job
[2025-10-11 14:14:24] 2025-10-11 19:13:35,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 14:14:24] 2025-10-11 19:13:35,209 | INFO     | ***************************************
[2025-10-11 14:14:24] 2025-10-11 19:13:35,210 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 14:14:24] 2025-10-11 19:13:35,210 | INFO     | ***************************************
[2025-10-11 14:14:24] 2025-10-11 19:13:35,210 | INFO     | 
[2025-10-11 14:14:24] 2025-10-11 19:13:35,215 | INFO     | architecture information:
[2025-10-11 14:14:24] 2025-10-11 19:13:35,215 | INFO     | executing command: cat /etc/os-release
[2025-10-11 14:14:24] 2025-10-11 19:13:35,230 | INFO     | cat /etc/os-release:
[2025-10-11 14:14:24] NAME="CentOS Linux"
[2025-10-11 14:14:24] VERSION="7 (Core)"
[2025-10-11 14:14:24] ID="centos"
[2025-10-11 14:14:24] ID_LIKE="rhel fedora"
[2025-10-11 14:14:24] VERSION_ID="7"
[2025-10-11 14:14:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 14:14:24] ANSI_COLOR="0;31"
[2025-10-11 14:14:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 14:14:24] HOME_URL="https://www.centos.org/"
[2025-10-11 14:14:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 14:14:24] 
[2025-10-11 14:14:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 14:14:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 14:14:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 14:14:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 14:14:24] 
[2025-10-11 14:14:24] 2025-10-11 19:13:35,230 | INFO     | ***************************************
[2025-10-11 14:14:24] 2025-10-11 19:13:35,733 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-11 14:14:24] 2025-10-11 19:13:35,750 | INFO     | sufficient remaining disk space (1816892801024 B)
[2025-10-11 14:14:24] 2025-10-11 19:13:35,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 14:14:24] 2025-10-11 19:13:35,750 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 14:14:24] 2025-10-11 19:13:35,751 | INFO     | update_server=False
[2025-10-11 14:14:24] 2025-10-11 19:13:35,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 14:14:24] 2025-10-11 19:13:35,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:14:24] 2025-10-11 19:13:35,751 | INFO     | aborting loop
[2025-10-11 14:14:24] 2025-10-11 19:13:35,919 | INFO     | all data control threads have been joined
[2025-10-11 14:14:24] 2025-10-11 19:13:36,039 | INFO     | all job control threads have been joined
[2025-10-11 14:14:24] 2025-10-11 19:13:36,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 14:14:24] 2025-10-11 19:13:36,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 14:14:24] 2025-10-11 19:13:36,756 | INFO     | [job] retrieve thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:36,757 | INFO     | [job] job monitor thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:36,795 | INFO     | [payload] validate_post thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:36,920 | INFO     | [data] control thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:36,968 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:37,033 | INFO     | all payload control threads have been joined
[2025-10-11 14:14:24] 2025-10-11 19:13:37,044 | INFO     | [job] control thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:37,183 | INFO     | [data] copytool_in thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:37,214 | INFO     | [payload] failed_post thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:37,688 | INFO     | [job] validate thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:37,935 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:38,038 | INFO     | [payload] control thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:38,184 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:38,338 | INFO     | [data] copytool_out thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:38,351 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:14:24] 2025-10-11 19:13:39,356 | INFO     | [job] queue monitor thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:40,680 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:13:45,970 | INFO     | job.realtimelogging is not enabled
[2025-10-11 14:14:24] 2025-10-11 19:13:46,976 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 14:14:24] 2025-10-11 19:14:05,528 | INFO     | PID=2859759 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 14:14:24] 2025-10-11 19:14:05,529 | INFO     | .. there are 5 such processes running
[2025-10-11 14:14:24] 2025-10-11 19:14:05,529 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 14:14:24] 2025-10-11 19:14:05,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 14:14:24] 2025-10-11 19:14:05,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 14:14:24] 2025-10-11 19:14:17,295 | INFO     | [monitor] cgroup control has ended
[2025-10-11 14:14:24] 2025-10-11 19:14:19,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123720427136832)>', '<ExcThread(monitor, started 123719611574016)>']
[2025-10-11 14:14:24] 2025-10-11 19:14:19,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 14:14:24] 2025-10-11 19:14:19,599 | INFO     | [monitor] control thread has ended
[2025-10-11 14:14:24] 2025-10-11 19:14:24,156 | INFO     | all workflow threads have been joined
[2025-10-11 14:14:24] 2025-10-11 19:14:24,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 14:14:24] 2025-10-11 19:14:24,156 | INFO     | traces error code: 0
[2025-10-11 14:14:24] 2025-10-11 19:14:24,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 14:14:24] 2025-10-11 19:14:24,274 [wrapper] ==== pilot stdout END ====
[2025-10-11 14:14:24] 2025-10-11 19:14:24,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 14:14:24] 2025-10-11 19:14:24,280 [wrapper] pilotpid: 2859759
[2025-10-11 14:14:24] 2025-10-11 19:14:24,283 [wrapper] Pilot exit status: 0
[2025-10-11 14:14:24] 2025-10-11 19:14:24,298 [wrapper] pandaids: 6838066345
[2025-10-11 14:14:24] 2025-10-11 19:14:24,375 [wrapper] cleanup supervisor_pilot 2972464 2859760
[2025-10-11 14:14:24] 2025-10-11 19:14:24,379 [wrapper] Test setup, not cleaning
[2025-10-11 14:14:24] 2025-10-11 19:14:24,382 [wrapper] apfmon messages muted
[2025-10-11 14:14:24] 2025-10-11 19:14:24,385 [wrapper] ==== wrapper stdout END ====
[2025-10-11 14:14:24] 2025-10-11 19:14:24,388 [wrapper] ==== wrapper stderr END ====
[2025-10-11 14:14:24]  *** Error codes and diagnostics ***
[2025-10-11 14:14:24]     "exeErrorCode": 0,
[2025-10-11 14:14:24]     "exeErrorDiag": "",
[2025-10-11 14:14:24]     "pilotErrorCode": 0,
[2025-10-11 14:14:24]     "pilotErrorDiag": "",
[2025-10-11 14:14:24]  *** Listing of results directory ***
[2025-10-11 14:14:24] total 410664
[2025-10-11 14:14:24] -rw-r--r-- 1 mark mark    557409 Oct 10 22:42 pilot3.tar.gz
[2025-10-11 14:14:24] -rw-r--r-- 1 mark mark      5112 Oct 10 23:13 queuedata.json
[2025-10-11 14:14:24] -rwx------ 1 mark mark     36292 Oct 10 23:13 runpilot2-wrapper.sh
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark       100 Oct 11 13:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 14:14:24] -rwxr-xr-x 1 mark mark      7986 Oct 11 13:18 run_atlas
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark       105 Oct 11 13:18 job.xml
[2025-10-11 14:14:24] -rw-r--r-- 2 mark mark 220297435 Oct 11 13:18 EVNT.46676267._002047.pool.root.1
[2025-10-11 14:14:24] -rw-r--r-- 2 mark mark     15120 Oct 11 13:18 start_atlas.sh
[2025-10-11 14:14:24] drwxrwx--x 2 mark mark      4096 Oct 11 13:18 shared
[2025-10-11 14:14:24] -rw-r--r-- 2 mark mark    569682 Oct 11 13:18 input.tar.gz
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark      9341 Oct 11 13:18 init_data.xml
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark         0 Oct 11 13:18 boinc_setup_complete
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark         0 Oct 11 13:18 boinc_lockfile
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark      2551 Oct 11 13:18 pandaJob.out
[2025-10-11 14:14:24] -rw------- 1 mark mark    975520 Oct 11 13:18 agis_schedconf.cvmfs.json
[2025-10-11 14:14:24] -rw------- 1 mark mark   1560580 Oct 11 13:19 agis_ddmendpoints.agis.ALL.json
[2025-10-11 14:14:24] drwx------ 5 mark mark      4096 Oct 11 13:19 pilot3
[2025-10-11 14:14:24] -rw------- 1 mark mark 194575968 Oct 11 14:12 HITS.46676269._050882.pool.root.1
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark       529 Oct 11 14:12 boinc_task_state.xml
[2025-10-11 14:14:24] -rw------- 1 mark mark        95 Oct 11 14:13 pilot_heartbeat.json
[2025-10-11 14:14:24] -rw------- 1 mark mark      1031 Oct 11 14:13 memory_monitor_summary.json
[2025-10-11 14:14:24] -rw------- 1 mark mark    372733 Oct 11 14:13 log.46676269._050882.job.log.tgz.1
[2025-10-11 14:14:24] -rw------- 1 mark mark      7784 Oct 11 14:13 heartbeat.json
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark        27 Oct 11 14:14 wrapper_checkpoint.txt
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark      8192 Oct 11 14:14 boinc_mmap_file
[2025-10-11 14:14:24] -rw------- 1 mark mark      4904 Oct 11 14:14 pilotlog.txt
[2025-10-11 14:14:24] -rw------- 1 mark mark    494711 Oct 11 14:14 log.46676269._050882.job.log.1
[2025-10-11 14:14:24] -rw------- 1 mark mark       357 Oct 11 14:14 output.list
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark       620 Oct 11 14:14 runtime_log
[2025-10-11 14:14:24] -rw------- 1 mark mark    890880 Oct 11 14:14 result.tar.gz
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark      8759 Oct 11 14:14 runtime_log.err
[2025-10-11 14:14:24] -rw------- 1 mark mark       645 Oct 11 14:14 A86MDm39fR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOPfNDmupZFSn.diag
[2025-10-11 14:14:24] -rw-rw-r-- 1 mark mark     22362 Oct 11 14:14 stderr.txt
[2025-10-11 14:14:24] HITS file was successfully produced:
[2025-10-11 14:14:24] -rw------- 1 mark mark 194575968 Oct 11 14:12 shared/HITS.pool.root.1
[2025-10-11 14:14:24]  *** Contents of shared directory: ***
[2025-10-11 14:14:24] total 406608
[2025-10-11 14:14:24] -rw-r--r-- 2 mark mark 220297435 Oct 11 13:18 ATLAS.root_0
[2025-10-11 14:14:24] -rw-r--r-- 2 mark mark     15120 Oct 11 13:18 start_atlas.sh
[2025-10-11 14:14:24] -rw-r--r-- 2 mark mark    569682 Oct 11 13:18 input.tar.gz
[2025-10-11 14:14:24] -rw------- 1 mark mark 194575968 Oct 11 14:12 HITS.pool.root.1
[2025-10-11 14:14:24] -rw------- 1 mark mark    890880 Oct 11 14:14 result.tar.gz
14:14:26 (2855688): run_atlas exited; CPU time 34145.792877
14:14:26 (2855688): called boinc_finish(0)

</stderr_txt>
]]>

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