Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:51:26 (741444): wrapper (7.7.26015): starting
09:51:26 (741444): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 09:51:26] Arguments: --nthreads 4
[2025-10-12 09:51:26] Threads: 4
[2025-10-12 09:51:26] Checking for CVMFS
[2025-10-12 09:51:26] No cvmfs_config command found, will try listing directly
[2025-10-12 09:51:26] CVMFS is ok
[2025-10-12 09:51:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:51:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:51:26] Further information can be found at the LHC@home message board.
[2025-10-12 09:51:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:51:26] Checking for apptainer binary...
[2025-10-12 09:51:26] which: no apptainer in ((null))
[2025-10-12 09:51:26] apptainer is not installed, using version from CVMFS
[2025-10-12 09:51:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:51:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-10-12 09:51:26] apptainer works
[2025-10-12 09:51:26] Set ATHENA_PROC_NUMBER=4
[2025-10-12 09:51:26] Set ATHENA_CORE_NUMBER=4
[2025-10-12 09:51:26] Starting ATLAS job with PandaID=6838199497
[2025-10-12 09:51:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:04:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:04:48] 2025-10-12 11:00:08,105 | INFO     | time since job start (11311s) is within the limit (172800.0s)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,102 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 13:04:48] 2025-10-12 11:00:09,120 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2735.5536875000007
[2025-10-12 13:04:48] 2025-10-12 11:00:09,135 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6838199497/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,137 | INFO     | extracted standard info from prmon json
[2025-10-12 13:04:48] 2025-10-12 11:00:09,137 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:04:48] 2025-10-12 11:00:09,137 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:04:48] 2025-10-12 11:00:09,138 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:04:48] 2025-10-12 11:00:09,138 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:04:48] 2025-10-12 11:00:09,142 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:04:48] 2025-10-12 11:00:09,143 | INFO     | sum of square deviations: 1963274020.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,144 | INFO     | sum of deviations: 18215092453.000004
[2025-10-12 13:04:48] 2025-10-12 11:00:09,144 | INFO     | mean x: 1760261136.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,144 | INFO     | mean y: 2334089.881081081
[2025-10-12 13:04:48] 2025-10-12 11:00:09,144 | INFO     | -- intersect: -16329221773.962526
[2025-10-12 13:04:48] 2025-10-12 11:00:09,144 | INFO     | intersect: -16329221773.962526
[2025-10-12 13:04:48] 2025-10-12 11:00:09,145 | INFO     | chi2: 1.3855851223211142
[2025-10-12 13:04:48] 2025-10-12 11:00:09,145 | INFO     | sum of square deviations: 1808350185.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,146 | INFO     | sum of deviations: 17627485065.000004
[2025-10-12 13:04:48] 2025-10-12 11:00:09,146 | INFO     | mean x: 1760260983.5
[2025-10-12 13:04:48] 2025-10-12 11:00:09,146 | INFO     | mean y: 2333510.2555555557
[2025-10-12 13:04:48] 2025-10-12 11:00:09,146 | INFO     | -- intersect: -17156386329.811522
[2025-10-12 13:04:48] 2025-10-12 11:00:09,147 | INFO     | intersect: -17156386329.811522
[2025-10-12 13:04:48] 2025-10-12 11:00:09,147 | INFO     | chi2: 1.3866344063357525
[2025-10-12 13:04:48] 2025-10-12 11:00:09,147 | INFO     | current chi2=1.3866344063357525 (change=-0.07572858554374363 %)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,147 | INFO     | right removable region: 179
[2025-10-12 13:04:48] 2025-10-12 11:00:09,147 | INFO     | sum of square deviations: 1808350185.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,148 | INFO     | sum of deviations: -6388016593.499999
[2025-10-12 13:04:48] 2025-10-12 11:00:09,149 | INFO     | mean x: 1760261288.5
[2025-10-12 13:04:48] 2025-10-12 11:00:09,149 | INFO     | mean y: 2357986.316666667
[2025-10-12 13:04:48] 2025-10-12 11:00:09,149 | INFO     | -- intersect: 6220500032.644762
[2025-10-12 13:04:48] 2025-10-12 11:00:09,149 | INFO     | intersect: 6220500032.644762
[2025-10-12 13:04:48] 2025-10-12 11:00:09,150 | INFO     | chi2: 0.028799345114254065
[2025-10-12 13:04:48] 2025-10-12 11:00:09,150 | INFO     | current chi2=0.028799345114254065 (change=97.92150300618053 %)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,150 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,151 | INFO     | sum of deviations: -4530161279.000002
[2025-10-12 13:04:48] 2025-10-12 11:00:09,151 | INFO     | mean x: 1760261441.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,151 | INFO     | mean y: 2356047.234285714
[2025-10-12 13:04:48] 2025-10-12 11:00:09,151 | INFO     | -- intersect: 4800932854.878092
[2025-10-12 13:04:48] 2025-10-12 11:00:09,151 | INFO     | intersect: 4800932854.878092
[2025-10-12 13:04:48] 2025-10-12 11:00:09,152 | INFO     | chi2: 0.026357857358172792
[2025-10-12 13:04:48] 2025-10-12 11:00:09,152 | INFO     | current chi2=0.026357857358172792 (change=8.477580814408427 %)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,152 | INFO     | left removable region: 20
[2025-10-12 13:04:48] 2025-10-12 11:00:09,152 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,153 | INFO     | sum of deviations: 675430246.9999993
[2025-10-12 13:04:48] 2025-10-12 11:00:09,153 | INFO     | mean x: 1760261563.0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,153 | INFO     | mean y: 2349690.830188679
[2025-10-12 13:04:48] 2025-10-12 11:00:09,154 | INFO     | -- intersect: -951555238.827964
[2025-10-12 13:04:48] 2025-10-12 11:00:09,154 | INFO     | intersect: -951555238.827964
[2025-10-12 13:04:48] 2025-10-12 11:00:09,154 | INFO     | chi2: 0.009081190939967414
[2025-10-12 13:04:48] 2025-10-12 11:00:09,154 | INFO     | -- intersect: -951555238.827964
[2025-10-12 13:04:48] 2025-10-12 11:00:09,154 | INFO     | current memory leak: 0.54 B/s (using 159 data points, chi2=0.01)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,155 | INFO     | could have reported an average CPU frequency of 2648 MHz (10 samples)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,155 | INFO     | ..............................
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . Timing measurements:
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . get job = 0 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . initial setup = 1 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . payload setup = 6 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . stage-in = 0 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . payload execution = 11279 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . stage-out = 1 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | . log creation = 0 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,156 | INFO     | ..............................
[2025-10-12 13:04:48] 2025-10-12 11:00:09,264 | INFO     | 
[2025-10-12 13:04:48] 2025-10-12 11:00:09,264 | INFO     | job summary report
[2025-10-12 13:04:48] 2025-10-12 11:00:09,264 | INFO     | --------------------------------------------------
[2025-10-12 13:04:48] 2025-10-12 11:00:09,264 | INFO     | PanDA job id: 6838199497
[2025-10-12 13:04:48] 2025-10-12 11:00:09,264 | INFO     | task id: 46676269
[2025-10-12 13:04:48] 2025-10-12 11:00:09,264 | INFO     | errors: (none)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | pilot state: finished 
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | transexitcode: 0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | exeerrorcode: 0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | exeerrordiag: 
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | exitcode: 0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | exitmsg: OK
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | cpuconsumptiontime: 43722 s
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | nevents: 400
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | neventsw: 0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,265 | INFO     | pid: 769161
[2025-10-12 13:04:48] 2025-10-12 11:00:09,266 | INFO     | pgrp: 769161
[2025-10-12 13:04:48] 2025-10-12 11:00:09,266 | INFO     | corecount: 4
[2025-10-12 13:04:48] 2025-10-12 11:00:09,266 | INFO     | event service: False
[2025-10-12 13:04:48] 2025-10-12 11:00:09,266 | INFO     | sizes: {0: 2348868, 5: 2349130, 11: 2349186, 11289: 2378519, 11291: 2387539, 11292: 2387595, 11296: 2387917}
[2025-10-12 13:04:48] 2025-10-12 11:00:09,266 | INFO     | --------------------------------------------------
[2025-10-12 13:04:48] 2025-10-12 11:00:09,266 | INFO     | 
[2025-10-12 13:04:48] 2025-10-12 11:00:09,266 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2025-10-12 13:04:48] 2025-10-12 11:00:09,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,290 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,290 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,290 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,291 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,292 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,292 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:04:48] 2025-10-12 11:00:09,292 | INFO     | job 6838199497 has completed (purged errors)
[2025-10-12 13:04:48] 2025-10-12 11:00:09,292 | INFO     | overall cleanup function is called
[2025-10-12 13:04:48] 2025-10-12 11:00:09,752 | INFO     | PID=747471 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:04:48] 2025-10-12 11:00:09,752 | INFO     | .. there are 6 such processes running
[2025-10-12 13:04:48] 2025-10-12 11:00:10,302 | INFO     | --- collectZombieJob: --- 10, [769161]
[2025-10-12 13:04:48] 2025-10-12 11:00:10,302 | INFO     | zombie collector waiting for pid 769161
[2025-10-12 13:04:48] 2025-10-12 11:00:10,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:04:48] 2025-10-12 11:00:10,302 | INFO     | collected zombie processes
[2025-10-12 13:04:48] 2025-10-12 11:00:10,302 | INFO     | will attempt to kill all subprocesses of pid=769161
[2025-10-12 13:04:48] 2025-10-12 11:00:10,657 | INFO     | process IDs to be killed: [769161] (in reverse order)
[2025-10-12 13:04:48] 2025-10-12 11:00:10,771 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:04:48] 2025-10-12 11:00:10,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:04:48] 2025-10-12 11:00:10,784 | INFO     | did not find any defunct processes belonging to 769161
[2025-10-12 13:04:48] 2025-10-12 11:00:10,796 | INFO     | did not find any defunct processes belonging to 769161
[2025-10-12 13:04:48] 2025-10-12 11:00:10,797 | INFO     | ready for new job
[2025-10-12 13:04:48] 2025-10-12 11:00:10,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:04:48] 2025-10-12 11:00:10,800 | INFO     | ***************************************
[2025-10-12 13:04:48] 2025-10-12 11:00:10,800 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:04:48] 2025-10-12 11:00:10,800 | INFO     | ***************************************
[2025-10-12 13:04:48] 2025-10-12 11:00:10,800 | INFO     | 
[2025-10-12 13:04:48] 2025-10-12 11:00:10,804 | INFO     | architecture information:
[2025-10-12 13:04:48] 2025-10-12 11:00:10,804 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:04:48] 2025-10-12 11:00:10,820 | INFO     | cat /etc/os-release:
[2025-10-12 13:04:48] NAME="CentOS Linux"
[2025-10-12 13:04:48] VERSION="7 (Core)"
[2025-10-12 13:04:48] ID="centos"
[2025-10-12 13:04:48] ID_LIKE="rhel fedora"
[2025-10-12 13:04:48] VERSION_ID="7"
[2025-10-12 13:04:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:04:48] ANSI_COLOR="0;31"
[2025-10-12 13:04:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:04:48] HOME_URL="https://www.centos.org/"
[2025-10-12 13:04:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:04:48] 
[2025-10-12 13:04:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:04:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:04:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:04:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:04:48] 
[2025-10-12 13:04:48] 2025-10-12 11:00:10,821 | INFO     | ***************************************
[2025-10-12 13:04:48] 2025-10-12 11:00:11,324 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-10-12 13:04:48] 2025-10-12 11:00:11,342 | INFO     | sufficient remaining disk space (692609613824 B)
[2025-10-12 13:04:48] 2025-10-12 11:00:11,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:04:48] 2025-10-12 11:00:11,343 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:04:48] 2025-10-12 11:00:11,343 | INFO     | update_server=False
[2025-10-12 13:04:48] 2025-10-12 11:00:11,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:04:48] 2025-10-12 11:00:11,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:04:48] 2025-10-12 11:00:11,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:04:48] 2025-10-12 11:00:11,344 | INFO     | aborting loop
[2025-10-12 13:04:48] 2025-10-12 11:00:11,467 | INFO     | all payload control threads have been joined
[2025-10-12 13:04:48] 2025-10-12 11:00:11,471 | INFO     | all job control threads have been joined
[2025-10-12 13:04:48] 2025-10-12 11:00:11,834 | INFO     | all data control threads have been joined
[2025-10-12 13:04:48] 2025-10-12 11:00:11,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:04:48] 2025-10-12 11:00:12,349 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:12,350 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:12,473 | INFO     | [job] control thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:12,473 | INFO     | [payload] control thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:12,712 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:12,742 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:12,805 | INFO     | [job] validate thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:12,840 | INFO     | [data] control thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:13,198 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:13,334 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:13,620 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:13,627 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:13,792 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:13,896 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:14,274 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:04:48] 2025-10-12 11:00:15,279 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:15,350 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:04:48] 2025-10-12 11:00:42,313 | INFO     | PID=747471 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 13:04:48] 2025-10-12 11:00:42,313 | INFO     | .. there are 6 such processes running
[2025-10-12 13:04:48] 2025-10-12 11:00:42,313 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:04:48] 2025-10-12 11:00:42,313 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:04:48] 2025-10-12 11:00:42,313 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:04:48] 2025-10-12 11:00:54,647 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:04:48] 2025-10-12 11:00:55,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23389439604544)>', '<ExcThread(monitor, started 23389200676608)>']
[2025-10-12 13:04:48] 2025-10-12 11:00:55,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:04:48] 2025-10-12 11:00:55,376 | INFO     | [monitor] control thread has ended
[2025-10-12 13:04:48] 2025-10-12 11:01:00,223 | INFO     | all workflow threads have been joined
[2025-10-12 13:04:48] 2025-10-12 11:01:00,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:04:48] 2025-10-12 11:01:00,224 | INFO     | traces error code: 0
[2025-10-12 13:04:48] 2025-10-12 11:01:00,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:04:48] 2025-10-12 11:01:00,402 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:04:48] 2025-10-12 11:01:00,405 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:04:48] 2025-10-12 11:01:00,408 [wrapper] pilotpid: 747471
[2025-10-12 13:04:48] 2025-10-12 11:01:00,411 [wrapper] Pilot exit status: 0
[2025-10-12 13:04:48] 2025-10-12 11:01:00,423 [wrapper] pandaids: 6838199497
[2025-10-12 13:04:48] 2025-10-12 11:01:00,499 [wrapper] cleanup supervisor_pilot 1002321 747474
[2025-10-12 13:04:48] 2025-10-12 11:01:00,503 [wrapper] Test setup, not cleaning
[2025-10-12 13:04:48] 2025-10-12 11:01:00,506 [wrapper] apfmon messages muted
[2025-10-12 13:04:48] 2025-10-12 11:01:00,509 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:04:48] 2025-10-12 11:01:00,512 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:04:48]  *** Error codes and diagnostics ***
[2025-10-12 13:04:48]     "exeErrorCode": 0,
[2025-10-12 13:04:48]     "exeErrorDiag": "",
[2025-10-12 13:04:48]     "pilotErrorCode": 0,
[2025-10-12 13:04:48]     "pilotErrorDiag": "",
[2025-10-12 13:04:48]  *** Listing of results directory ***
[2025-10-12 13:04:48] total 423568
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc    557409 Oct 11 09:02 pilot3.tar.gz
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc      5112 Oct 11 09:37 queuedata.json
[2025-10-12 13:04:48] -rwx------ 1 boinc boinc     36292 Oct 11 09:37 runpilot2-wrapper.sh
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc       100 Oct 12 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:04:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 09:51 run_atlas
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc       105 Oct 12 09:51 job.xml
[2025-10-12 13:04:48] -rw-r--r-- 2 boinc boinc 219516249 Oct 12 09:51 EVNT.46676267._002150.pool.root.1
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc      6633 Oct 12 09:51 init_data.xml
[2025-10-12 13:04:48] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:51 start_atlas.sh
[2025-10-12 13:04:48] drwxrwx--x 2 boinc boinc      4096 Oct 12 09:51 shared
[2025-10-12 13:04:48] -rw-r--r-- 2 boinc boinc    569680 Oct 12 09:51 input.tar.gz
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:51 boinc_lockfile
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc      2550 Oct 12 09:51 pandaJob.out
[2025-10-12 13:04:48] -rw------- 1 boinc boinc    975520 Oct 12 09:51 agis_schedconf.cvmfs.json
[2025-10-12 13:04:48] drwx------ 5 boinc boinc      4096 Oct 12 09:51 pilot3
[2025-10-12 13:04:48] -rw------- 1 boinc boinc 206358886 Oct 12 12:59 HITS.46676269._053577.pool.root.1
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc       528 Oct 12 12:59 boinc_task_state.xml
[2025-10-12 13:04:48] -rw------- 1 boinc boinc        95 Oct 12 12:59 pilot_heartbeat.json
[2025-10-12 13:04:48] -rw------- 1 boinc boinc      1052 Oct 12 12:59 memory_monitor_summary.json
[2025-10-12 13:04:48] -rw------- 1 boinc boinc   1560580 Oct 12 13:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:04:48] -rw------- 1 boinc boinc    367694 Oct 12 13:00 log.46676269._053577.job.log.tgz.1
[2025-10-12 13:04:48] -rw------- 1 boinc boinc      7846 Oct 12 13:00 heartbeat.json
[2025-10-12 13:04:48] -rw------- 1 boinc boinc      4832 Oct 12 13:01 pilotlog.txt
[2025-10-12 13:04:48] -rw------- 1 boinc boinc   1605683 Oct 12 13:01 log.46676269._053577.job.log.1
[2025-10-12 13:04:48] -rw------- 1 boinc boinc       357 Oct 12 13:01 output.list
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc       620 Oct 12 13:01 runtime_log
[2025-10-12 13:04:48] -rw------- 1 boinc boinc   1996800 Oct 12 13:01 result.tar.gz
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc      9070 Oct 12 13:01 runtime_log.err
[2025-10-12 13:04:48] -rw------- 1 boinc boinc       664 Oct 12 13:01 YcGMDmgLjR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmImfNDmSpfmEn.diag
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc        27 Oct 12 13:04 wrapper_checkpoint.txt
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc      8192 Oct 12 13:04 boinc_mmap_file
[2025-10-12 13:04:48] -rw-r--r-- 1 boinc boinc     20981 Oct 12 13:04 stderr.txt
[2025-10-12 13:04:48] HITS file was successfully produced:
[2025-10-12 13:04:48] -rw------- 1 boinc boinc 206358886 Oct 12 12:59 shared/HITS.pool.root.1
[2025-10-12 13:04:48]  *** Contents of shared directory: ***
[2025-10-12 13:04:48] total 418432
[2025-10-12 13:04:48] -rw-r--r-- 2 boinc boinc 219516249 Oct 12 09:51 ATLAS.root_0
[2025-10-12 13:04:48] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:51 start_atlas.sh
[2025-10-12 13:04:48] -rw-r--r-- 2 boinc boinc    569680 Oct 12 09:51 input.tar.gz
[2025-10-12 13:04:48] -rw------- 1 boinc boinc 206358886 Oct 12 12:59 HITS.pool.root.1
[2025-10-12 13:04:48] -rw------- 1 boinc boinc   1996800 Oct 12 13:01 result.tar.gz
13:04:50 (741444): run_atlas exited; CPU time 44160.329537
13:04:50 (741444): called boinc_finish(0)

</stderr_txt>
]]>

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