Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:17:50 (2810146): wrapper (7.7.26015): starting
23:17:50 (2810146): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 23:17:50] Arguments: --nthreads 3
[2025-10-11 23:17:50] Threads: 3
[2025-10-11 23:17:50] Checking for CVMFS
[2025-10-11 23:17:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:17:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:17:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:17:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:17:50] 2.9.2.0 1859496 3075 82604 151597 1 56 29511716 36864001 0 130560 0 2493911 99.991 106672 984 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 23:17:50] CVMFS is ok
[2025-10-11 23:17:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:17:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:17:50] Further information can be found at the LHC@home message board.
[2025-10-11 23:17:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:17:50] Checking for apptainer binary...
[2025-10-11 23:17:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:17:50] Running /usr/bin/apptainer --version
[2025-10-11 23:17:50] apptainer version 1.4.1-1.1
[2025-10-11 23:17:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:17:50] atlasA228b
[2025-10-11 23:17:50] apptainer works
[2025-10-11 23:17:50] Set ATHENA_PROC_NUMBER=3
[2025-10-11 23:17:50] Set ATHENA_CORE_NUMBER=3
[2025-10-11 23:17:50] Starting ATLAS job with PandaID=6838063724
[2025-10-11 23:17:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:38:08]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:38:08] 2025-10-11 22:37:29,731 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | job 6838063724 has completed (purged errors)
[2025-10-12 00:38:08] 2025-10-11 22:37:29,732 | INFO     | overall cleanup function is called
[2025-10-12 00:38:08] 2025-10-11 22:37:30,734 | INFO     | --- collectZombieJob: --- 10, [2820290]
[2025-10-12 00:38:08] 2025-10-11 22:37:30,735 | INFO     | zombie collector waiting for pid 2820290
[2025-10-12 00:38:08] 2025-10-11 22:37:30,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:38:08] 2025-10-11 22:37:30,735 | INFO     | collected zombie processes
[2025-10-12 00:38:08] 2025-10-11 22:37:30,735 | INFO     | will attempt to kill all subprocesses of pid=2820290
[2025-10-12 00:38:08] 2025-10-11 22:37:30,778 | INFO     | process IDs to be killed: [2820290] (in reverse order)
[2025-10-12 00:38:08] 2025-10-11 22:37:30,805 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:38:08] 2025-10-11 22:37:30,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:38:08] 2025-10-11 22:37:30,806 | INFO     | did not find any defunct processes belonging to 2820290
[2025-10-12 00:38:08] 2025-10-11 22:37:30,807 | INFO     | did not find any defunct processes belonging to 2820290
[2025-10-12 00:38:08] 2025-10-11 22:37:30,807 | INFO     | ready for new job
[2025-10-12 00:38:08] 2025-10-11 22:37:30,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:38:08] 2025-10-11 22:37:30,808 | INFO     | ***************************************
[2025-10-12 00:38:08] 2025-10-11 22:37:30,808 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:38:08] 2025-10-11 22:37:30,808 | INFO     | ***************************************
[2025-10-12 00:38:08] 2025-10-11 22:37:30,808 | INFO     | 
[2025-10-12 00:38:08] 2025-10-11 22:37:30,808 | INFO     | architecture information:
[2025-10-12 00:38:08] 2025-10-11 22:37:30,808 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:38:08] 2025-10-11 22:37:30,818 | INFO     | cat /etc/os-release:
[2025-10-12 00:38:08] NAME="CentOS Linux"
[2025-10-12 00:38:08] VERSION="7 (Core)"
[2025-10-12 00:38:08] ID="centos"
[2025-10-12 00:38:08] ID_LIKE="rhel fedora"
[2025-10-12 00:38:08] VERSION_ID="7"
[2025-10-12 00:38:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:38:08] ANSI_COLOR="0;31"
[2025-10-12 00:38:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:38:08] HOME_URL="https://www.centos.org/"
[2025-10-12 00:38:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:38:08] 
[2025-10-12 00:38:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:38:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:38:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:38:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:38:08] 
[2025-10-12 00:38:08] 2025-10-11 22:37:30,818 | INFO     | ***************************************
[2025-10-12 00:38:08] 2025-10-11 22:37:31,321 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 00:38:08] 2025-10-11 22:37:31,335 | INFO     | sufficient remaining disk space (275053019136 B)
[2025-10-12 00:38:08] 2025-10-11 22:37:31,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:38:08] 2025-10-11 22:37:31,335 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:38:08] 2025-10-11 22:37:31,335 | INFO     | update_server=False
[2025-10-12 00:38:08] 2025-10-11 22:37:31,335 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:38:08] 2025-10-11 22:37:31,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:38:08] 2025-10-11 22:37:31,336 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 00:38:08] 2025-10-11 22:37:31,336 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:38:08] 2025-10-11 22:37:31,336 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:38:08] 2025-10-11 22:37:31,336 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:38:08] 2025-10-11 22:37:31,527 | INFO     | all payload control threads have been joined
[2025-10-12 00:38:08] 2025-10-11 22:37:31,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:38:08] 2025-10-11 22:37:31,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:38:08] 2025-10-11 22:37:31,662 | INFO     | aborting loop
[2025-10-12 00:38:08] 2025-10-11 22:37:32,251 | INFO     | all data control threads have been joined
[2025-10-12 00:38:08] 2025-10-11 22:37:32,341 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:32,341 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:32,532 | INFO     | [payload] control thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:32,568 | INFO     | all job control threads have been joined
[2025-10-12 00:38:08] 2025-10-11 22:37:32,667 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:32,703 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,168 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,257 | INFO     | [data] control thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,305 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,421 | INFO     | [job] validate thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,480 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,491 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,534 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,538 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,574 | INFO     | [job] control thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:33,698 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:38:08] 2025-10-11 22:37:37,705 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:37:41,781 | INFO     | job.realtimelogging is not enabled
[2025-10-12 00:38:08] 2025-10-11 22:37:42,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:38:08] 2025-10-11 22:38:02,272 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:38:08] 2025-10-11 22:38:03,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619435112256)>', '<ExcThread(monitor, started 140618571446016)>']
[2025-10-12 00:38:08] 2025-10-11 22:38:04,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:38:08] 2025-10-11 22:38:04,509 | INFO     | [monitor] control thread has ended
[2025-10-12 00:38:08] 2025-10-11 22:38:08,742 | INFO     | all workflow threads have been joined
[2025-10-12 00:38:08] 2025-10-11 22:38:08,742 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:38:08] 2025-10-11 22:38:08,743 | INFO     | traces error code: 0
[2025-10-12 00:38:08] 2025-10-11 22:38:08,743 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:38:08] 2025-10-11 22:38:08,793 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:38:08] 2025-10-11 22:38:08,796 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:38:08] 2025-10-11 22:38:08,798 [wrapper] pilotpid: 2813858
[2025-10-12 00:38:08] 2025-10-11 22:38:08,801 [wrapper] Pilot exit status: 0
[2025-10-12 00:38:08] 2025-10-11 22:38:08,808 [wrapper] pandaids: 6838063724
[2025-10-12 00:38:08] 2025-10-11 22:38:08,826 [wrapper] cleanup supervisor_pilot 2832698 2813859
[2025-10-12 00:38:08] 2025-10-11 22:38:08,829 [wrapper] Test setup, not cleaning
[2025-10-12 00:38:08] 2025-10-11 22:38:08,831 [wrapper] apfmon messages muted
[2025-10-12 00:38:08] 2025-10-11 22:38:08,834 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:38:08] 2025-10-11 22:38:08,836 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:38:08]  *** Error codes and diagnostics ***
[2025-10-12 00:38:08]     "exeErrorCode": 0,
[2025-10-12 00:38:08]     "exeErrorDiag": "",
[2025-10-12 00:38:08]     "pilotErrorCode": 0,
[2025-10-12 00:38:08]     "pilotErrorDiag": "",
[2025-10-12 00:38:08]  *** Listing of results directory ***
[2025-10-12 00:38:08] total 408272
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc    557409 Oct 11 05:42 pilot3.tar.gz
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc      5112 Oct 11 06:05 queuedata.json
[2025-10-12 00:38:08] -rwx------ 1 boinc boinc     36292 Oct 11 06:06 runpilot2-wrapper.sh
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc       100 Oct 11 23:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:38:08] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 23:17 run_atlas
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc       105 Oct 11 23:17 job.xml
[2025-10-12 00:38:08] -rw-r--r-- 2 boinc boinc 220546681 Oct 11 23:17 EVNT.46676267._002036.pool.root.1
[2025-10-12 00:38:08] drwxrwx--x 2 boinc boinc      4096 Oct 11 23:17 shared
[2025-10-12 00:38:08] -rw-r--r-- 2 boinc boinc    569680 Oct 11 23:17 input.tar.gz
[2025-10-12 00:38:08] -rw-r--r-- 2 boinc boinc     15120 Oct 11 23:17 start_atlas.sh
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc         0 Oct 11 23:17 boinc_setup_complete
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc      6449 Oct 11 23:17 init_data.xml
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc         0 Oct 11 23:17 boinc_lockfile
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc      2550 Oct 11 23:17 pandaJob.out
[2025-10-12 00:38:08] -rw------- 1 boinc boinc    975528 Oct 11 23:17 agis_schedconf.cvmfs.json
[2025-10-12 00:38:08] -rw------- 1 boinc boinc   1560580 Oct 11 23:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:38:08] drwx------ 5 boinc boinc      4096 Oct 11 23:17 pilot3
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc       529 Oct 12 00:36 boinc_task_state.xml
[2025-10-12 00:38:08] -rw------- 1 boinc boinc 191714956 Oct 12 00:37 HITS.46676269._050601.pool.root.1
[2025-10-12 00:38:08] -rw------- 1 boinc boinc      1017 Oct 12 00:37 memory_monitor_summary.json
[2025-10-12 00:38:08] -rw------- 1 boinc boinc        95 Oct 12 00:37 pilot_heartbeat.json
[2025-10-12 00:38:08] -rw------- 1 boinc boinc    251879 Oct 12 00:37 log.46676269._050601.job.log.tgz.1
[2025-10-12 00:38:08] -rw------- 1 boinc boinc      7762 Oct 12 00:37 heartbeat.json
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc      8192 Oct 12 00:37 boinc_mmap_file
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc        27 Oct 12 00:37 wrapper_checkpoint.txt
[2025-10-12 00:38:08] -rw------- 1 boinc boinc      4628 Oct 12 00:38 pilotlog.txt
[2025-10-12 00:38:08] -rw------- 1 boinc boinc    702806 Oct 12 00:38 log.46676269._050601.job.log.1
[2025-10-12 00:38:08] -rw------- 1 boinc boinc       357 Oct 12 00:38 output.list
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc       620 Oct 12 00:38 runtime_log
[2025-10-12 00:38:08] -rw------- 1 boinc boinc    972800 Oct 12 00:38 result.tar.gz
[2025-10-12 00:38:08] -rw------- 1 boinc boinc       662 Oct 12 00:38 yZrKDm12fR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm95QMDmp55TMn.diag
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc      8797 Oct 12 00:38 runtime_log.err
[2025-10-12 00:38:08] -rw-r--r-- 1 boinc boinc     12471 Oct 12 00:38 stderr.txt
[2025-10-12 00:38:08] HITS file was successfully produced:
[2025-10-12 00:38:08] -rw------- 1 boinc boinc 191714956 Oct 12 00:37 shared/HITS.pool.root.1
[2025-10-12 00:38:08]  *** Contents of shared directory: ***
[2025-10-12 00:38:08] total 404140
[2025-10-12 00:38:08] -rw-r--r-- 2 boinc boinc 220546681 Oct 11 23:17 ATLAS.root_0
[2025-10-12 00:38:08] -rw-r--r-- 2 boinc boinc    569680 Oct 11 23:17 input.tar.gz
[2025-10-12 00:38:08] -rw-r--r-- 2 boinc boinc     15120 Oct 11 23:17 start_atlas.sh
[2025-10-12 00:38:08] -rw------- 1 boinc boinc 191714956 Oct 12 00:37 HITS.pool.root.1
[2025-10-12 00:38:08] -rw------- 1 boinc boinc    972800 Oct 12 00:38 result.tar.gz
00:38:09 (2810146): run_atlas exited; CPU time 13676.432769
00:38:09 (2810146): called boinc_finish(0)

</stderr_txt>
]]>

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