Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:39:00 (1317357): wrapper (7.7.26015): starting
05:39:00 (1317357): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 05:39:00] Arguments: --nthreads 12
[2025-10-12 05:39:00] Threads: 12
[2025-10-12 05:39:00] Checking for CVMFS
[2025-10-12 05:39:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:39:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:39:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:39:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:39:00] 2.13.1.0 2584362 11361 82424 151606 2 57 2615655 4097025 0 130560 0 20411179 99.996 389224 3805 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 05:39:00] CVMFS is ok
[2025-10-12 05:39:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:39:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:39:00] Further information can be found at the LHC@home message board.
[2025-10-12 05:39:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:39:00] Checking for apptainer binary...
[2025-10-12 05:39:00] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 05:39:00] apptainer is not installed, using version from CVMFS
[2025-10-12 05:39:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:39:00] pckelar1.cern.ch
[2025-10-12 05:39:00] apptainer works
[2025-10-12 05:39:00] Set ATHENA_PROC_NUMBER=12
[2025-10-12 05:39:00] Set ATHENA_CORE_NUMBER=12
[2025-10-12 05:39:00] Starting ATLAS job with PandaID=6838065280
[2025-10-12 05:39:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:22:17]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:22:17]  storage_token=
[2025-10-12 06:22:17]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6838065280/log.46676269._050784.job.log.tgz.1
[2025-10-12 06:22:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/db/log.46676269._050784.job.log.tgz.1
[2025-10-12 06:22:17]  workdir=None
[2025-10-12 06:22:17] ]
[2025-10-12 06:22:17] 2025-10-12 04:21:15,143 | INFO     | transferring file log.46676269._050784.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6838065280/log.46676269._050784.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 06:22:17] 2025-10-12 04:21:15,143 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6838065280/log.46676269._050784.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._050784.job
[2025-10-12 06:22:17] 2025-10-12 04:21:15,155 | INFO     | adding to output.list: log.46676269._050784.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/db/log.46676269._050784.job.log.tg
[2025-10-12 06:22:17] 2025-10-12 04:21:15,156 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 06:22:17] 2025-10-12 04:21:15,156 | INFO     | summary of transferred files:
[2025-10-12 06:22:17] 2025-10-12 04:21:15,156 | INFO     |  -- lfn=log.46676269._050784.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 06:22:17] 2025-10-12 04:21:15,156 | INFO     | stage-out finished correctly
[2025-10-12 06:22:17] 2025-10-12 04:21:15,723 | INFO     | time since job start (2528s) is within the limit (172800.0s)
[2025-10-12 06:22:17] 2025-10-12 04:21:15,774 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 06:22:17] 2025-10-12 04:21:16,920 | WARNING  | process 1328639 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 06:22:17] 2025-10-12 04:21:16,921 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6838065280/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:22:17] 2025-10-12 04:21:16,983 | INFO     | number of running child processes to parent process 1328639: 1
[2025-10-12 06:22:17] 2025-10-12 04:21:16,984 | INFO     | maximum number of monitored processes: 6
[2025-10-12 06:22:17] 2025-10-12 04:21:17,213 | INFO     | job 6838065280 has state=finished
[2025-10-12 06:22:17] 2025-10-12 04:21:17,213 | INFO     | preparing for final server update for job 6838065280 in state='finished'
[2025-10-12 06:22:17] 2025-10-12 04:21:17,214 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:22:17] 2025-10-12 04:21:17,214 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:22:17] 2025-10-12 04:21:17,214 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:22:17] 2025-10-12 04:21:17,214 | INFO     | job 6838065280 has finished - writing final server update
[2025-10-12 06:22:17] 2025-10-12 04:21:17,214 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:22:17] 2025-10-12 04:21:17,215 | INFO     | executing command: lscpu
[2025-10-12 06:22:17] 2025-10-12 04:21:17,237 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:22:17] 2025-10-12 04:21:17,728 | INFO     | time since job start (2530s) is within the limit (172800.0s)
[2025-10-12 06:22:17] 2025-10-12 04:21:19,486 | INFO     | monitor loop #196: job 0:6838065280 is in state 'finished'
[2025-10-12 06:22:17] 2025-10-12 04:21:19,486 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:22:17] 2025-10-12 04:21:19,733 | INFO     | time since job start (2532s) is within the limit (172800.0s)
[2025-10-12 06:22:17] 2025-10-12 04:21:21,738 | INFO     | time since job start (2534s) is within the limit (172800.0s)
[2025-10-12 06:22:17] 2025-10-12 04:21:21,989 | INFO     | monitor loop #197: job 0:6838065280 is in state 'finished'
[2025-10-12 06:22:17] 2025-10-12 04:21:21,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:22:17] 2025-10-12 04:21:22,219 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 06:22:17] 2025-10-12 04:21:22,222 | INFO     | found 20 cores (10 cores per socket, 2 sockets) , CPU MHz: 2474.2108
[2025-10-12 06:22:17] 2025-10-12 04:21:22,224 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6838065280/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:22:17] 2025-10-12 04:21:22,224 | INFO     | extracted standard info from prmon json
[2025-10-12 06:22:17] 2025-10-12 04:21:22,224 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:22:17] 2025-10-12 04:21:22,224 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:22:17] 2025-10-12 04:21:22,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:22:17] 2025-10-12 04:21:22,225 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | sum of square deviations: 12176972.5
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | sum of deviations: -3343902575.0
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | mean x: 1760241683.5
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | mean y: 2997169.411764706
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | -- intersect: 483380675658.70654
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | intersect: 483380675658.70654
[2025-10-12 06:22:17] 2025-10-12 04:21:22,226 | INFO     | chi2: 0.05311598358492498
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | -- intersect: 483380675658.70654
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | current memory leak: -274.61 B/s (using 34 data points, chi2=0.05)
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | could have reported an average CPU frequency of 2503 MHz (5 samples)
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | ..............................
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . Timing measurements:
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . get job = 0 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . initial setup = 1 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . payload setup = 6 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . stage-in = 0 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . payload execution = 2503 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . stage-out = 0 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | . log creation = 0 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,227 | INFO     | ..............................
[2025-10-12 06:22:17] 2025-10-12 04:21:22,667 | INFO     | 
[2025-10-12 06:22:17] 2025-10-12 04:21:22,667 | INFO     | job summary report
[2025-10-12 06:22:17] 2025-10-12 04:21:22,667 | INFO     | --------------------------------------------------
[2025-10-12 06:22:17] 2025-10-12 04:21:22,667 | INFO     | PanDA job id: 6838065280
[2025-10-12 06:22:17] 2025-10-12 04:21:22,667 | INFO     | task id: 46676269
[2025-10-12 06:22:17] 2025-10-12 04:21:22,667 | INFO     | errors: (none)
[2025-10-12 06:22:17] 2025-10-12 04:21:22,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | pilot state: finished 
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | transexitcode: 0
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | exeerrorcode: 0
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | exeerrordiag: 
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | exitcode: 0
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | exitmsg: OK
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | cpuconsumptiontime: 26912 s
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | nevents: 400
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | neventsw: 0
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | pid: 1328639
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | pgrp: 1328639
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | corecount: 12
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | event service: False
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | sizes: {0: 2348858, 3: 2349120, 10: 2349148, 2512: 2374345, 2513: 2383343, 2514: 2383399, 2520: 2383753}
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | --------------------------------------------------
[2025-10-12 06:22:17] 2025-10-12 04:21:22,668 | INFO     | 
[2025-10-12 06:22:17] 2025-10-12 04:21:22,669 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 06:22:17] 2025-10-12 04:21:22,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,688 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:22:17] 2025-10-12 04:21:22,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,688 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:22:17] 2025-10-12 04:21:22,688 | INFO     | job 6838065280 has completed (purged errors)
[2025-10-12 06:22:17] 2025-10-12 04:21:22,688 | INFO     | overall cleanup function is called
[2025-10-12 06:22:17] 2025-10-12 04:21:23,695 | INFO     | --- collectZombieJob: --- 10, [1328639]
[2025-10-12 06:22:17] 2025-10-12 04:21:23,695 | INFO     | zombie collector waiting for pid 1328639
[2025-10-12 06:22:17] 2025-10-12 04:21:23,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:22:17] 2025-10-12 04:21:23,695 | INFO     | collected zombie processes
[2025-10-12 06:22:17] 2025-10-12 04:21:23,695 | INFO     | will attempt to kill all subprocesses of pid=1328639
[2025-10-12 06:22:17] 2025-10-12 04:21:23,773 | INFO     | process IDs to be killed: [1328639] (in reverse order)
[2025-10-12 06:22:17] 2025-10-12 04:21:23,804 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:22:17] 2025-10-12 04:21:23,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:22:17] 2025-10-12 04:21:23,806 | INFO     | did not find any defunct processes belonging to 1328639
[2025-10-12 06:22:17] 2025-10-12 04:21:23,807 | INFO     | did not find any defunct processes belonging to 1328639
[2025-10-12 06:22:17] 2025-10-12 04:21:23,807 | INFO     | ready for new job
[2025-10-12 06:22:17] 2025-10-12 04:21:23,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:22:17] 2025-10-12 04:21:23,809 | INFO     | ***************************************
[2025-10-12 06:22:17] 2025-10-12 04:21:23,809 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:22:17] 2025-10-12 04:21:23,809 | INFO     | ***************************************
[2025-10-12 06:22:17] 2025-10-12 04:21:23,809 | INFO     | 
[2025-10-12 06:22:17] 2025-10-12 04:21:23,810 | INFO     | architecture information:
[2025-10-12 06:22:17] 2025-10-12 04:21:23,810 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:22:17] 2025-10-12 04:21:23,819 | INFO     | cat /etc/os-release:
[2025-10-12 06:22:17] NAME="CentOS Linux"
[2025-10-12 06:22:17] VERSION="7 (Core)"
[2025-10-12 06:22:17] ID="centos"
[2025-10-12 06:22:17] ID_LIKE="rhel fedora"
[2025-10-12 06:22:17] VERSION_ID="7"
[2025-10-12 06:22:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:22:17] ANSI_COLOR="0;31"
[2025-10-12 06:22:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:22:17] HOME_URL="https://www.centos.org/"
[2025-10-12 06:22:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:22:17] 
[2025-10-12 06:22:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:22:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:22:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:22:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:22:17] 
[2025-10-12 06:22:17] 2025-10-12 04:21:23,819 | INFO     | ***************************************
[2025-10-12 06:22:17] 2025-10-12 04:21:24,322 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 06:22:17] 2025-10-12 04:21:24,335 | INFO     | sufficient remaining disk space (825285935104 B)
[2025-10-12 06:22:17] 2025-10-12 04:21:24,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:22:17] 2025-10-12 04:21:24,336 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:22:17] 2025-10-12 04:21:24,336 | INFO     | update_server=False
[2025-10-12 06:22:17] 2025-10-12 04:21:24,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:22:17] 2025-10-12 04:21:24,482 | INFO     | all payload control threads have been joined
[2025-10-12 06:22:17] 2025-10-12 04:21:24,492 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 06:22:17] 2025-10-12 04:21:24,493 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 06:22:17] 2025-10-12 04:21:24,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:22:17] 2025-10-12 04:21:24,493 | INFO     | will abort loop
[2025-10-12 06:22:17] 2025-10-12 04:21:24,885 | INFO     | all data control threads have been joined
[2025-10-12 06:22:17] 2025-10-12 04:21:25,341 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:25,468 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:25,485 | INFO     | [payload] control thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:25,488 | INFO     | all job control threads have been joined
[2025-10-12 06:22:17] 2025-10-12 04:21:25,498 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:25,664 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:25,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:22:17] 2025-10-12 04:21:25,890 | INFO     | [data] control thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:26,072 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:26,199 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:26,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:22:17] 2025-10-12 04:21:26,493 | INFO     | [job] control thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:26,724 | INFO     | [job] validate thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:26,780 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:26,940 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:27,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:22:17] 2025-10-12 04:21:27,715 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:28,289 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:30,331 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:34,542 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:22:17] 2025-10-12 04:21:35,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:22:17] 2025-10-12 04:21:54,922 | INFO     | PID=1321187 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:22:17] 2025-10-12 04:21:54,923 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:22:17] 2025-10-12 04:21:54,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:22:17] 2025-10-12 04:21:54,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:22:17] 2025-10-12 04:22:10,992 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:22:17] 2025-10-12 04:22:12,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107852187456)>', '<ExcThread(monitor, started 140107319334656)>']
[2025-10-12 06:22:17] 2025-10-12 04:22:13,014 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:22:17] 2025-10-12 04:22:13,015 | INFO     | [monitor] control thread has ended
[2025-10-12 06:22:17] 2025-10-12 04:22:17,311 | INFO     | all workflow threads have been joined
[2025-10-12 06:22:17] 2025-10-12 04:22:17,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:22:17] 2025-10-12 04:22:17,312 | INFO     | traces error code: 0
[2025-10-12 06:22:17] 2025-10-12 04:22:17,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:22:17] 2025-10-12 04:22:17,383 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:22:17] 2025-10-12 04:22:17,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:22:17] 2025-10-12 04:22:17,388 [wrapper] pilotpid: 1321187
[2025-10-12 06:22:17] 2025-10-12 04:22:17,390 [wrapper] Pilot exit status: 0
[2025-10-12 06:22:17] 2025-10-12 04:22:17,399 [wrapper] pandaids: 6838065280
[2025-10-12 06:22:17] 2025-10-12 04:22:17,424 [wrapper] cleanup supervisor_pilot 1337936 1321188
[2025-10-12 06:22:17] 2025-10-12 04:22:17,426 [wrapper] Test setup, not cleaning
[2025-10-12 06:22:17] 2025-10-12 04:22:17,428 [wrapper] apfmon messages muted
[2025-10-12 06:22:17] 2025-10-12 04:22:17,430 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:22:17] 2025-10-12 04:22:17,433 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:22:17]  *** Error codes and diagnostics ***
[2025-10-12 06:22:17]     "exeErrorCode": 0,
[2025-10-12 06:22:17]     "exeErrorDiag": "",
[2025-10-12 06:22:17]     "pilotErrorCode": 0,
[2025-10-12 06:22:17]     "pilotErrorDiag": "",
[2025-10-12 06:22:17]  *** Listing of results directory ***
[2025-10-12 06:22:17] total 410924
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc    557409 Oct 11 05:42 pilot3.tar.gz
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc      5112 Oct 11 06:10 queuedata.json
[2025-10-12 06:22:17] -rwx------ 1 boinc boinc     36292 Oct 11 06:10 runpilot2-wrapper.sh
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc       100 Oct 12 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:22:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 05:38 run_atlas
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc       105 Oct 12 05:38 job.xml
[2025-10-12 06:22:17] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:39 start_atlas.sh
[2025-10-12 06:22:17] drwxrwx--x 2 boinc boinc        68 Oct 12 05:39 shared
[2025-10-12 06:22:17] -rw-r--r-- 2 boinc boinc    569681 Oct 12 05:39 input.tar.gz
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc      6532 Oct 12 05:39 init_data.xml
[2025-10-12 06:22:17] -rw-r--r-- 2 boinc boinc 221537439 Oct 12 05:39 EVNT.46676267._002043.pool.root.1
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:39 boinc_lockfile
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc      2551 Oct 12 05:39 pandaJob.out
[2025-10-12 06:22:17] -rw------- 1 boinc boinc    975512 Oct 12 05:39 agis_schedconf.cvmfs.json
[2025-10-12 06:22:17] -rw------- 1 boinc boinc   1560580 Oct 12 05:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:22:17] drwx------ 5 boinc boinc      4096 Oct 12 05:39 pilot3
[2025-10-12 06:22:17] -rw------- 1 boinc boinc 193835144 Oct 12 06:20 HITS.46676269._050784.pool.root.1
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc       529 Oct 12 06:20 boinc_task_state.xml
[2025-10-12 06:22:17] -rw------- 1 boinc boinc      1020 Oct 12 06:21 memory_monitor_summary.json
[2025-10-12 06:22:17] -rw------- 1 boinc boinc    365834 Oct 12 06:21 log.46676269._050784.job.log.tgz.1
[2025-10-12 06:22:17] -rw------- 1 boinc boinc      7803 Oct 12 06:21 heartbeat.json
[2025-10-12 06:22:17] -rw------- 1 boinc boinc        95 Oct 12 06:21 pilot_heartbeat.json
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc      8192 Oct 12 06:22 boinc_mmap_file
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc        27 Oct 12 06:22 wrapper_checkpoint.txt
[2025-10-12 06:22:17] -rw------- 1 boinc boinc      5007 Oct 12 06:22 pilotlog.txt
[2025-10-12 06:22:17] -rw------- 1 boinc boinc    394486 Oct 12 06:22 log.46676269._050784.job.log.1
[2025-10-12 06:22:17] -rw------- 1 boinc boinc       357 Oct 12 06:22 output.list
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc       620 Oct 12 06:22 runtime_log
[2025-10-12 06:22:17] -rw------- 1 boinc boinc    778240 Oct 12 06:22 result.tar.gz
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc      8727 Oct 12 06:22 runtime_log.err
[2025-10-12 06:22:17] -rw------- 1 boinc boinc       654 Oct 12 06:22 a3nNDm76fR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm37QMDmnGcy0n.diag
[2025-10-12 06:22:17] -rw-r--r-- 1 boinc boinc     22275 Oct 12 06:22 stderr.txt
[2025-10-12 06:22:17] HITS file was successfully produced:
[2025-10-12 06:22:17] -rw------- 1 boinc boinc 193835144 Oct 12 06:20 shared/HITS.pool.root.1
[2025-10-12 06:22:17]  *** Contents of shared directory: ***
[2025-10-12 06:22:17] total 406980
[2025-10-12 06:22:17] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:39 start_atlas.sh
[2025-10-12 06:22:17] -rw-r--r-- 2 boinc boinc    569681 Oct 12 05:39 input.tar.gz
[2025-10-12 06:22:17] -rw-r--r-- 2 boinc boinc 221537439 Oct 12 05:39 ATLAS.root_0
[2025-10-12 06:22:17] -rw------- 1 boinc boinc 193835144 Oct 12 06:20 HITS.pool.root.1
[2025-10-12 06:22:17] -rw------- 1 boinc boinc    778240 Oct 12 06:22 result.tar.gz
06:22:19 (1317357): run_atlas exited; CPU time 26920.745035
06:22:19 (1317357): called boinc_finish(0)

</stderr_txt>
]]>

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